Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8243085.1

Orthogroup ID

OG0001914

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 591

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8243085.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

gacgacgtgggcggagccttcgggatgggggccgtgggaggggcggccttccacttcatcaaaggcatctacaactcccccaagggcgcgcgtctcgtcggcggctcccaggccgtccgcatgaacgccccccgcgtcggcggaagcttcgccgtctggggcggactcttctccaccttcgactgcaccatggtctacctccgccagaaagaggacccctggaactccatcatcgccggcgcggccaccggcggcttcctccagatgcggcagggcctcggcgccaccgcgaggtccgccgccatgggaggggtgctgttggccctgatcgaaggcgccgggatcatgctcaacaaaatcatgagcgagcagcagcagcagcagatggtgatggaggatcctggtgctggtctgcctgggatgccgcagatgggcggacctcccggctcagaagaaagctcctccgttgggtcgtggttgggagggtggtttgggaaagccaaagagcctgagccggccagcagcggaagcgagacgaaggtcctcgagagttttgatgcgcctccagtgccgtcttttgagttcaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098573 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

196

Amino Acids

20.22

Weight (kDa)

5.18

Isoelectric Point (pI)

55.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20350 AT2G37410 AT2G37410
fragaria_vesca	FvH4_1g06160 FvH4_1g06160 FvH4_1g06160 FvH4_3g20950 FvH4_6g21710 FvH4_6g25200 FvH4_6g30630 FvH4_7g25780
malus_domestica	MD02G1065800.v1.1 MD15G1196700.v1.1
prunus_persica	Prupe.4G283200_v2.0.a1 Prupe.5G013800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0091921 RchiOBHm_Chr2g0091931 RchiOBHm_Chr2g0091941 RchiOBHm_Chr3g0491401
rosa_laevigata	RLG00000016261 RLG00000022844 RLG00000033645
rosa_multiflora	Rmu_co8243085.1_g000001 Rmu_sc0006034.1_g000002 Rmu_sc0031557.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149600 Rroxscaffold_2G00149610
rosa_rugosa	Rorug01G0286100 Rorug02G0021700 Rorug03G0249200
rosa_samantha	Rh2AG067300 Rh2BG066500 Rh2BG066600 Rh2CG067800 Rh2CG067900 Rh2DG066400 Rh3BG334400 Rh3CG331400 Rh3DG332900 Rh4BG045200 Rh6AG042000 Rh6DG310700 Rh7BG337600 Rh7BG370600
rosa_wichuraiana	Rw2G005370 Rw3G026340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	281, 335
AccI	GTMKAC	1 cut(s)	195
AccII	CGCG	5 cut(s)	89, 91, 135, 242, 290
AclWI	GGATC	3 cut(s)	350, 392, 405
AcoI	YGGCCR	2 cut(s)	243, 516
AcyI	GRCGYC	2 cut(s)	282, 336
AfiI	CCNNNNNNNGG	8 cut(s)	39, 137, 211, 291, 309, 407, 431, 468
AgsI	TTSAA	1 cut(s)	586
AjiI	CACGTC	1 cut(s)	7
AjnI	CCWGG	4 cut(s)	108, 218, 400, 415
AluBI	AGCT	2 cut(s)	147, 459
AluI	AGCT	2 cut(s)	147, 459
Alw26I	GTCTC	2 cut(s)	98, 527
AlwI	GGATC	3 cut(s)	350, 392, 405
Ama87I	CYCGRG	1 cut(s)	545
AoxI	GGCC	7 cut(s)	30, 45, 111, 243, 274, 321, 516
ApeKI	GCWGC	5 cut(s)	370, 373, 376, 379, 522
AspLEI	GCGC	6 cut(s)	89, 91, 242, 284, 338, 562
AspS9I	GGNCC	7 cut(s)	30, 214, 274, 294, 322, 437, 541
AsuC2I	CCSGG	2 cut(s)	340, 444
AsuHPI	GGTGA	1 cut(s)	400
AvaI	CYCGRG	1 cut(s)	545
AvaII	GGWCC	4 cut(s)	214, 294, 437, 541
BamHI	GGATCC	1 cut(s)	397
BanI	GGYRCC	2 cut(s)	281, 335
BbvI	GCAGC	5 cut(s)	382, 385, 388, 391, 534
BccI	CCATC	5 cut(s)	19, 236, 379, 385, 424
BceAI	ACGGC	4 cut(s)	17, 98, 137, 556
BciT130I	CCWGG	4 cut(s)	110, 220, 402, 417
BcnI	CCSGG	2 cut(s)	340, 444
BcoDI	GTCTC	2 cut(s)	98, 527
BfoI	RGCGCY	2 cut(s)	285, 339
BglI	GCCNNNNNGGC	1 cut(s)	242
Bme1390I	CCNGG	6 cut(s)	110, 220, 340, 402, 417, 444
Bme18I	GGWCC	4 cut(s)	214, 294, 437, 541
BmeT110I	CYCGRG	1 cut(s)	545
BmgBI	CACGTC	1 cut(s)	7
BmgT120I	GGNCC	7 cut(s)	30, 214, 274, 294, 322, 437, 541
BmiI	GGNNCC	7 cut(s)	16, 31, 106, 216, 283, 337, 399
BmrFI	CCNGG	6 cut(s)	110, 220, 340, 402, 417, 444
BmsI	GCATC	4 cut(s)	75, 255, 411, 547
BoxI	GACNNNNGTC	1 cut(s)	539
BpmI	CTGGAG	2 cut(s)	245, 549
Bpu10I	CCTNAGC	1 cut(s)	510
BpuMI	CCSGG	2 cut(s)	340, 444
BsaHI	GRCGYC	2 cut(s)	282, 336
BsaJI	CCNNGG	8 cut(s)	33, 81, 108, 189, 218, 277, 303, 416
Bsc4I	CCNNNNNNNGG	8 cut(s)	39, 137, 211, 291, 309, 407, 431, 468
Bse118I	RCCGGY	3 cut(s)	236, 248, 514
Bse1I	ACTGG	1 cut(s)	566
BseBI	CCWGG	4 cut(s)	110, 220, 402, 417
BseDI	CCNNGG	8 cut(s)	33, 81, 108, 189, 218, 277, 303, 416
BseGI	GGATG	2 cut(s)	30, 426
BseLI	CCNNNNNNNGG	8 cut(s)	39, 137, 211, 291, 309, 407, 431, 468
BseMII	CTCAG	2 cut(s)	462, 501
BseNI	ACTGG	1 cut(s)	566
BsePI	GCGCGC	1 cut(s)	87
BseRI	GAGGAG	1 cut(s)	451
BseXI	GCAGC	5 cut(s)	382, 385, 388, 391, 534
BsgI	GTGCAG	1 cut(s)	169
Bsh1236I	CGCG	5 cut(s)	89, 91, 135, 242, 290
BshFI	GGCC	7 cut(s)	32, 47, 113, 245, 276, 323, 518
BshNI	GGYRCC	2 cut(s)	281, 335
BsiHKCI	CYCGRG	1 cut(s)	545
BsiSI	CCGG	5 cut(s)	237, 249, 339, 444, 515
BslI	CCNNNNNNNGG	8 cut(s)	39, 137, 211, 291, 309, 407, 431, 468
BsmAI	GTCTC	2 cut(s)	98, 527
BsmBI	CGTCTC	2 cut(s)	98, 527
BsnI	GGCC	7 cut(s)	32, 47, 113, 245, 276, 323, 518
BsoBI	CYCGRG	1 cut(s)	545
Bsp143I	GATC	3 cut(s)	327, 342, 397
Bsp19I	CCATGG	2 cut(s)	189, 303
BspANI	GGCC	7 cut(s)	32, 47, 113, 245, 276, 323, 518
BspCNI	CTCAG	2 cut(s)	461, 502
BspFNI	CGCG	5 cut(s)	89, 91, 135, 242, 290
BspHI	TCATGA	1 cut(s)	360
BspLI	GGNNCC	7 cut(s)	16, 31, 106, 216, 283, 337, 399
BspPI	GGATC	3 cut(s)	350, 392, 405
BspT107I	GGYRCC	2 cut(s)	281, 335
BsrFI	RCCGGY	3 cut(s)	236, 248, 514
BsrI	ACTGG	1 cut(s)	566
BssAI	RCCGGY	3 cut(s)	236, 248, 514
BssECI	CCNNGG	8 cut(s)	33, 81, 108, 189, 218, 277, 303, 416
BssHII	GCGCGC	1 cut(s)	87
BssMI	GATC	3 cut(s)	327, 342, 397
BssNI	GRCGYC	2 cut(s)	282, 336
BssT1I	CCWWGG	3 cut(s)	81, 189, 303
Bst2UI	CCWGG	4 cut(s)	110, 220, 402, 417
Bst6I	CTCTTC	1 cut(s)	173
BstACI	GRCGYC	2 cut(s)	282, 336
BstC8I	GCNNGC	5 cut(s)	89, 238, 368, 516, 520
BstDEI	CTNAG	2 cut(s)	448, 510
BstDSI	CCRYGG	3 cut(s)	33, 189, 303
BstF5I	GGATG	2 cut(s)	30, 426
BstFNI	CGCG	5 cut(s)	89, 91, 135, 242, 290
BstH2I	RGCGCY	2 cut(s)	285, 339
BstHHI	GCGC	6 cut(s)	89, 91, 242, 284, 338, 562
BstKTI	GATC	3 cut(s)	330, 345, 400
BstMAI	GTCTC	2 cut(s)	98, 527
BstMBI	GATC	3 cut(s)	327, 342, 397
BstMWI	GCNNNNNNNGC	7 cut(s)	242, 296, 376, 379, 421, 528, 568
BstNI	CCWGG	4 cut(s)	110, 220, 402, 417
BstPAI	GACNNNNGTC	1 cut(s)	539
BstSCI	CCNGG	6 cut(s)	108, 218, 338, 400, 415, 442
BstUI	CGCG	5 cut(s)	89, 91, 135, 242, 290
BstV1I	GCAGC	5 cut(s)	382, 385, 388, 391, 534
BstX2I	RGATCY	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	397
BsuRI	GGCC	7 cut(s)	32, 47, 113, 245, 276, 323, 518
BtgI	CCRYGG	3 cut(s)	33, 189, 303
BtgZI	GCGATG	1 cut(s)	217
BtrI	CACGTC	1 cut(s)	7
BtsCI	GGATG	2 cut(s)	30, 426
BtsIMutI	CAGTG	1 cut(s)	573
Cac8I	GCNNGC	5 cut(s)	89, 238, 368, 516, 520
CciI	TCATGA	1 cut(s)	360
CfoI	GCGC	6 cut(s)	89, 91, 242, 284, 338, 562
Cfr10I	RCCGGY	3 cut(s)	236, 248, 514
Cfr13I	GGNCC	7 cut(s)	30, 214, 274, 294, 322, 437, 541
CseI	GACGC	2 cut(s)	80, 124
CviAII	CATG	5 cut(s)	121, 190, 304, 346, 361
DdeI	CTNAG	2 cut(s)	448, 510
DinI	GGCGCC	2 cut(s)	283, 337
DpnI	GATC	3 cut(s)	329, 344, 399
DpnII	GATC	3 cut(s)	327, 342, 397
EaeI	YGGCCR	2 cut(s)	243, 516
Eam1104I	CTCTTC	1 cut(s)	173
EarI	CTCTTC	1 cut(s)	173
EciI	GGCGGA	6 cut(s)	27, 156, 177, 191, 286, 450
Eco130I	CCWWGG	3 cut(s)	81, 189, 303
Eco47I	GGWCC	4 cut(s)	214, 294, 437, 541
Eco88I	CYCGRG	1 cut(s)	545
EcoO109I	RGGNCCY	3 cut(s)	214, 274, 541
EcoRII	CCWGG	4 cut(s)	108, 218, 400, 415
EcoT14I	CCWWGG	3 cut(s)	81, 189, 303
EgeI	GGCGCC	2 cut(s)	283, 337
EheI	GGCGCC	2 cut(s)	283, 337
ErhI	CCWWGG	3 cut(s)	81, 189, 303
Esp3I	CGTCTC	2 cut(s)	98, 527
FaeI	CATG	5 cut(s)	124, 193, 307, 349, 364
FaiI	YATR	5 cut(s)	122, 191, 305, 347, 362
FatI	CATG	5 cut(s)	120, 189, 303, 345, 360
FauI	CCCGC	1 cut(s)	140
FblI	GTMKAC	1 cut(s)	195
FokI	GGATG	2 cut(s)	37, 433
GlaI	GCGC	6 cut(s)	88, 90, 241, 283, 337, 561
GsuI	CTGGAG	2 cut(s)	245, 549
HaeII	RGCGCY	2 cut(s)	285, 339
HaeIII	GGCC	7 cut(s)	32, 47, 113, 245, 276, 323, 518
HapII	CCGG	5 cut(s)	237, 249, 339, 444, 515
HgaI	GACGC	2 cut(s)	80, 124
HhaI	GCGC	6 cut(s)	89, 91, 242, 284, 338, 562
Hin1I	GRCGYC	2 cut(s)	282, 336
Hin1II	CATG	5 cut(s)	124, 193, 307, 349, 364
Hin6I	GCGC	6 cut(s)	87, 89, 240, 282, 336, 560
HinP1I	GCGC	6 cut(s)	87, 89, 240, 282, 336, 560
HindIII	AAGCTT	1 cut(s)	145
HinfI	GANTC	1 cut(s)	165
HpaII	CCGG	5 cut(s)	237, 249, 339, 444, 515
HphI	GGTGA	1 cut(s)	400
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	1 cut(s)	451
Hpy188III	TCNNGA	4 cut(s)	22, 262, 361, 547
Hpy8I	GTNNAC	1 cut(s)	196
Hpy99I	CGWCG	3 cut(s)	8, 101, 140
HpyAV	CCTTC	5 cut(s)	28, 58, 187, 326, 532
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	1 cut(s)	186
HpyF10VI	GCNNNNNNNGC	7 cut(s)	242, 296, 376, 379, 421, 528, 568
HpyF3I	CTNAG	2 cut(s)	448, 510
HpySE526I	ACGT	1 cut(s)	6
Hsp92I	GRCGYC	2 cut(s)	282, 336
Hsp92II	CATG	5 cut(s)	124, 193, 307, 349, 364
HspAI	GCGC	6 cut(s)	87, 89, 240, 282, 336, 560
KasI	GGCGCC	2 cut(s)	281, 335
KroI	GCCGGC	2 cut(s)	236, 514
KroNI	GCCGGC	2 cut(s)	238, 516
Kzo9I	GATC	3 cut(s)	327, 342, 397
LmnI	GCTCC	3 cut(s)	14, 110, 464
Lsp1109I	GCAGC	5 cut(s)	382, 385, 388, 391, 534
LweI	GCATC	4 cut(s)	75, 255, 411, 547
MaeII	ACGT	1 cut(s)	6
MalI	GATC	3 cut(s)	329, 344, 399
MboI	GATC	3 cut(s)	327, 342, 397
MboII	GAAGA	2 cut(s)	160, 464
MflI	RGATCY	1 cut(s)	397
Mly113I	GGCGCC	2 cut(s)	282, 336
MlyI	GAGTC	1 cut(s)	159
MreI	CGCCGGCG	1 cut(s)	236
MroNI	GCCGGC	2 cut(s)	236, 514
MspA1I	CMGCKG	1 cut(s)	525
MspI	CCGG	5 cut(s)	237, 249, 339, 444, 515
MspR9I	CCNGG	6 cut(s)	110, 220, 340, 402, 417, 444
MvaI	CCWGG	4 cut(s)	110, 220, 402, 417
MvnI	CGCG	5 cut(s)	89, 91, 135, 242, 290
MwoI	GCNNNNNNNGC	7 cut(s)	242, 296, 376, 379, 421, 528, 568
NaeI	GCCGGC	2 cut(s)	238, 516
NarI	GGCGCC	2 cut(s)	282, 336
NciI	CCSGG	2 cut(s)	340, 444
NcoI	CCATGG	2 cut(s)	189, 303
NdeII	GATC	3 cut(s)	327, 342, 397
NgoMIV	GCCGGC	2 cut(s)	236, 514
NlaIII	CATG	5 cut(s)	124, 193, 307, 349, 364
NlaIV	GGNNCC	7 cut(s)	16, 31, 106, 216, 283, 337, 399
NmeAIII	GCCGAG	1 cut(s)	258
PaeR7I	CTCGAG	1 cut(s)	545
PagI	TCATGA	1 cut(s)	360
PauI	GCGCGC	1 cut(s)	87
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PdiI	GCCGGC	2 cut(s)	238, 516
PleI	GAGTC	1 cut(s)	159
PluTI	GGCGCC	2 cut(s)	285, 339
PpsI	GAGTC	1 cut(s)	159
PpuMI	RGGWCCY	2 cut(s)	214, 541
PshAI	GACNNNNGTC	1 cut(s)	539
Psp5II	RGGWCCY	2 cut(s)	214, 541
Psp6I	CCWGG	4 cut(s)	108, 218, 400, 415
PspGI	CCWGG	4 cut(s)	108, 218, 400, 415
PspN4I	GGNNCC	7 cut(s)	16, 31, 106, 216, 283, 337, 399
PspPI	GGNCC	7 cut(s)	30, 214, 274, 294, 322, 437, 541
PspPPI	RGGWCCY	2 cut(s)	214, 541
PsuI	RGATCY	1 cut(s)	397
PteI	GCGCGC	1 cut(s)	87
Sau3AI	GATC	3 cut(s)	327, 342, 397
Sau96I	GGNCC	7 cut(s)	30, 214, 274, 294, 322, 437, 541
SchI	GAGTC	1 cut(s)	159
ScrFI	CCNGG	6 cut(s)	110, 220, 340, 402, 417, 444
SetI	ASST	8 cut(s)	9, 149, 179, 201, 296, 442, 461, 543
SfaNI	GCATC	4 cut(s)	75, 255, 411, 547
SfoI	GGCGCC	2 cut(s)	283, 337
Sfr274I	CTCGAG	1 cut(s)	545
SgrAI	CRCCGGYG	2 cut(s)	236, 248
SinI	GGWCC	4 cut(s)	214, 294, 437, 541
SlaI	CTCGAG	1 cut(s)	545
SmlI	CTYRAG	1 cut(s)	545
SmoI	CTYRAG	1 cut(s)	545
SspDI	GGCGCC	2 cut(s)	281, 335
StyD4I	CCNGG	6 cut(s)	108, 218, 338, 400, 415, 442
StyI	CCWWGG	3 cut(s)	81, 189, 303
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	3 cut(s)	180, 330, 546
TauI	GCSGC	7 cut(s)	47, 105, 245, 255, 271, 302, 427
TscAI	CASTG	1 cut(s)	573
TseI	GCWGC	5 cut(s)	370, 373, 376, 379, 522
TspDTI	ATGAA	2 cut(s)	46, 137
TspGWI	ACGGA	1 cut(s)	454
TspRI	CASTG	1 cut(s)	573
VpaK11BI	GGWCC	4 cut(s)	214, 294, 437, 541
XhoI	CTCGAG	1 cut(s)	545
XmiI	GTMKAC	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.