Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001914

Physical Location & Seq

Genomic Coordinates Forward (+)

36054164 .. 36055153

Gene Structure 990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G026340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGGAACTCCAGAAACATCTCGGGAGCCGTGCCCGGACAGAATCCTGGACGACGTGGGCGGAGCCTTCGGGATGGGGGCCGTGGGAGGGGCGGCCTTCCACTTCATCAAAGGCATCTACAACTCCCCCAAGGGCGCGCGTCTCGTCGGCGGCTCCCAGGCCGTCCGCATGAACGCCCCCCGCGTCGGCGGAAGCTTCGCCGTCTGGGGCGGACTCTTCTCCACCTTCGACTGCACCATGGTCTACCTCCGCCAGAAAGAGGACCCCTGGAACTCCATCATCGCCGGCGCGGCCACCGGCGGCTTCCTCCAGATGCGGCAGGGCCTCGGCGCCACCGCGAGGTCCGCCGCCATGGGAGGGGTGCTGTTGGCCCTGATCGAAGGCGCCGGGATCATGCTCAACAAAATCATGAGCGAGCAGCAGCAGCAGCAGATGGTGATGGAGGATCCTGGTGCTGGTCTGCCTGGGATGCCGCAGATGGGCGGGCCTCCCGGCTCAGAAGAAAGCTCCTCCGTTGGGTCGTGGTTGGGAGGGTGGTTTGGGAAAGCCAAAGAGCCTGAGCCGACGAGCAGCGGAAGCGAGACGAAGGTCCTCGAGAGTTTTGATGCGCCTCCAGTGCCGTCTTTTGAGTTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098573 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

212

Amino Acids

22.04

Weight (kDa)

5.08

Isoelectric Point (pI)

54.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	15 - 122	2.6e-31	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20350 AT2G37410 AT2G37410
fragaria_vesca	FvH4_1g06160 FvH4_1g06160 FvH4_1g06160 FvH4_3g20950 FvH4_6g21710 FvH4_6g25200 FvH4_6g30630 FvH4_7g25780
malus_domestica	MD02G1065800.v1.1 MD15G1196700.v1.1
prunus_persica	Prupe.4G283200_v2.0.a1 Prupe.5G013800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0091921 RchiOBHm_Chr2g0091931 RchiOBHm_Chr2g0091941 RchiOBHm_Chr3g0491401
rosa_laevigata	RLG00000016261 RLG00000022844 RLG00000033645
rosa_multiflora	Rmu_co8243085.1_g000001 Rmu_sc0006034.1_g000002 Rmu_sc0031557.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149600 Rroxscaffold_2G00149610
rosa_rugosa	Rorug01G0286100 Rorug02G0021700 Rorug03G0249200
rosa_samantha	Rh2AG067300 Rh2BG066500 Rh2BG066600 Rh2CG067800 Rh2CG067900 Rh2DG066400 Rh3BG334400 Rh3CG331400 Rh3DG332900 Rh4BG045200 Rh6AG042000 Rh6DG310700 Rh7BG337600 Rh7BG370600
rosa_wichuraiana	Rw2G005370 Rw3G026340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	329, 383
AccI	GTMKAC	1 cut(s)	243
AccII	CGCG	5 cut(s)	137, 139, 183, 290, 338
AclWI	GGATC	3 cut(s)	398, 440, 453
AcoI	YGGCCR	1 cut(s)	291
AcyI	GRCGYC	2 cut(s)	330, 384
AfiI	CCNNNNNNNGG	8 cut(s)	87, 185, 259, 339, 357, 455, 479, 516
AgsI	TTSAA	1 cut(s)	634
AjiI	CACGTC	1 cut(s)	55
AjnI	CCWGG	5 cut(s)	45, 156, 266, 448, 463
AluBI	AGCT	2 cut(s)	195, 507
AluI	AGCT	2 cut(s)	195, 507
Alw26I	GTCTC	2 cut(s)	146, 575
AlwI	GGATC	3 cut(s)	398, 440, 453
Ama87I	CYCGRG	2 cut(s)	21, 593
AoxI	GGCC	7 cut(s)	78, 93, 159, 291, 322, 369, 485
ApeKI	GCWGC	5 cut(s)	418, 421, 424, 427, 570
AspLEI	GCGC	6 cut(s)	137, 139, 290, 332, 386, 610
AspS9I	GGNCC	7 cut(s)	78, 262, 322, 342, 370, 485, 589
AsuC2I	CCSGG	3 cut(s)	35, 388, 492
AsuHPI	GGTGA	1 cut(s)	448
AvaI	CYCGRG	2 cut(s)	21, 593
AvaII	GGWCC	3 cut(s)	262, 342, 589
BaeGI	GKGCMC	1 cut(s)	35
BamHI	GGATCC	1 cut(s)	445
BanI	GGYRCC	2 cut(s)	329, 383
BbvI	GCAGC	5 cut(s)	430, 433, 436, 439, 582
BccI	CCATC	5 cut(s)	67, 284, 427, 433, 472
BceAI	ACGGC	5 cut(s)	13, 65, 146, 185, 604
BciT130I	CCWGG	5 cut(s)	47, 158, 268, 450, 465
BcnI	CCSGG	3 cut(s)	35, 388, 492
BcoDI	GTCTC	2 cut(s)	146, 575
BfoI	RGCGCY	2 cut(s)	333, 387
BglI	GCCNNNNNGGC	1 cut(s)	290
Bme1390I	CCNGG	8 cut(s)	35, 47, 158, 268, 388, 450, 465, 492
Bme18I	GGWCC	3 cut(s)	262, 342, 589
BmeT110I	CYCGRG	2 cut(s)	21, 593
BmgBI	CACGTC	1 cut(s)	55
BmgT120I	GGNCC	7 cut(s)	78, 262, 322, 342, 370, 485, 589
BmiI	GGNNCC	8 cut(s)	27, 64, 79, 154, 264, 331, 385, 447
BmrFI	CCNGG	8 cut(s)	35, 47, 158, 268, 388, 450, 465, 492
BmsI	GCATC	4 cut(s)	123, 303, 459, 595
BoxI	GACNNNNGTC	1 cut(s)	587
BpmI	CTGGAG	2 cut(s)	293, 597
Bpu10I	CCTNAGC	1 cut(s)	558
BpuMI	CCSGG	3 cut(s)	35, 388, 492
BsaHI	GRCGYC	2 cut(s)	330, 384
BsaJI	CCNNGG	8 cut(s)	81, 129, 156, 237, 266, 325, 351, 464
Bsc4I	CCNNNNNNNGG	8 cut(s)	87, 185, 259, 339, 357, 455, 479, 516
Bse118I	RCCGGY	2 cut(s)	284, 296
Bse1I	ACTGG	1 cut(s)	614
BseBI	CCWGG	5 cut(s)	47, 158, 268, 450, 465
BseDI	CCNNGG	8 cut(s)	81, 129, 156, 237, 266, 325, 351, 464
BseGI	GGATG	2 cut(s)	78, 474
BseLI	CCNNNNNNNGG	8 cut(s)	87, 185, 259, 339, 357, 455, 479, 516
BseMII	CTCAG	2 cut(s)	510, 549
BseNI	ACTGG	1 cut(s)	614
BsePI	GCGCGC	1 cut(s)	135
BseRI	GAGGAG	1 cut(s)	499
BseSI	GKGCMC	1 cut(s)	35
BseXI	GCAGC	5 cut(s)	430, 433, 436, 439, 582
BsgI	GTGCAG	1 cut(s)	217
Bsh1236I	CGCG	5 cut(s)	137, 139, 183, 290, 338
BshFI	GGCC	7 cut(s)	80, 95, 161, 293, 324, 371, 487
BshNI	GGYRCC	2 cut(s)	329, 383
BsiHKCI	CYCGRG	2 cut(s)	21, 593
BsiSI	CCGG	5 cut(s)	35, 285, 297, 387, 492
BslI	CCNNNNNNNGG	8 cut(s)	87, 185, 259, 339, 357, 455, 479, 516
BsmAI	GTCTC	2 cut(s)	146, 575
BsmBI	CGTCTC	2 cut(s)	146, 575
BsnI	GGCC	7 cut(s)	80, 95, 161, 293, 324, 371, 487
BsoBI	CYCGRG	2 cut(s)	21, 593
Bsp1286I	GDGCHC	1 cut(s)	35
Bsp143I	GATC	3 cut(s)	375, 390, 445
Bsp19I	CCATGG	2 cut(s)	237, 351
BspANI	GGCC	7 cut(s)	80, 95, 161, 293, 324, 371, 487
BspCNI	CTCAG	2 cut(s)	509, 550
BspFNI	CGCG	5 cut(s)	137, 139, 183, 290, 338
BspHI	TCATGA	1 cut(s)	408
BspLI	GGNNCC	8 cut(s)	27, 64, 79, 154, 264, 331, 385, 447
BspPI	GGATC	3 cut(s)	398, 440, 453
BspT107I	GGYRCC	2 cut(s)	329, 383
BsrFI	RCCGGY	2 cut(s)	284, 296
BsrI	ACTGG	1 cut(s)	614
BssAI	RCCGGY	2 cut(s)	284, 296
BssECI	CCNNGG	8 cut(s)	81, 129, 156, 237, 266, 325, 351, 464
BssHII	GCGCGC	1 cut(s)	135
BssMI	GATC	3 cut(s)	375, 390, 445
BssNI	GRCGYC	2 cut(s)	330, 384
BssT1I	CCWWGG	3 cut(s)	129, 237, 351
Bst2UI	CCWGG	5 cut(s)	47, 158, 268, 450, 465
Bst6I	CTCTTC	1 cut(s)	221
BstACI	GRCGYC	2 cut(s)	330, 384
BstC8I	GCNNGC	4 cut(s)	137, 286, 416, 485
BstDEI	CTNAG	2 cut(s)	496, 558
BstDSI	CCRYGG	3 cut(s)	81, 237, 351
BstF5I	GGATG	2 cut(s)	78, 474
BstFNI	CGCG	5 cut(s)	137, 139, 183, 290, 338
BstH2I	RGCGCY	2 cut(s)	333, 387
BstHHI	GCGC	6 cut(s)	137, 139, 290, 332, 386, 610
BstKTI	GATC	3 cut(s)	378, 393, 448
BstMAI	GTCTC	2 cut(s)	146, 575
BstMBI	GATC	3 cut(s)	375, 390, 445
BstMWI	GCNNNNNNNGC	7 cut(s)	290, 344, 424, 427, 469, 576, 616
BstNI	CCWGG	5 cut(s)	47, 158, 268, 450, 465
BstPAI	GACNNNNGTC	1 cut(s)	587
BstSCI	CCNGG	8 cut(s)	33, 45, 156, 266, 386, 448, 463, 490
BstSLI	GKGCMC	1 cut(s)	35
BstUI	CGCG	5 cut(s)	137, 139, 183, 290, 338
BstV1I	GCAGC	5 cut(s)	430, 433, 436, 439, 582
BstX2I	RGATCY	1 cut(s)	445
BstYI	RGATCY	1 cut(s)	445
BsuRI	GGCC	7 cut(s)	80, 95, 161, 293, 324, 371, 487
BtgI	CCRYGG	3 cut(s)	81, 237, 351
BtgZI	GCGATG	1 cut(s)	265
BtrI	CACGTC	1 cut(s)	55
BtsCI	GGATG	2 cut(s)	78, 474
BtsIMutI	CAGTG	1 cut(s)	621
Cac8I	GCNNGC	4 cut(s)	137, 286, 416, 485
CciI	TCATGA	1 cut(s)	408
CfoI	GCGC	6 cut(s)	137, 139, 290, 332, 386, 610
Cfr10I	RCCGGY	2 cut(s)	284, 296
Cfr13I	GGNCC	7 cut(s)	78, 262, 322, 342, 370, 485, 589
CseI	GACGC	2 cut(s)	128, 172
CviAII	CATG	5 cut(s)	169, 238, 352, 394, 409
DdeI	CTNAG	2 cut(s)	496, 558
DinI	GGCGCC	2 cut(s)	331, 385
DpnI	GATC	3 cut(s)	377, 392, 447
DpnII	GATC	3 cut(s)	375, 390, 445
EaeI	YGGCCR	1 cut(s)	291
Eam1104I	CTCTTC	1 cut(s)	221
EarI	CTCTTC	1 cut(s)	221
EciI	GGCGGA	5 cut(s)	75, 204, 225, 239, 334
Eco130I	CCWWGG	3 cut(s)	129, 237, 351
Eco47I	GGWCC	3 cut(s)	262, 342, 589
Eco88I	CYCGRG	2 cut(s)	21, 593
EcoO109I	RGGNCCY	3 cut(s)	262, 322, 589
EcoRII	CCWGG	5 cut(s)	45, 156, 266, 448, 463
EcoT14I	CCWWGG	3 cut(s)	129, 237, 351
EgeI	GGCGCC	2 cut(s)	331, 385
EheI	GGCGCC	2 cut(s)	331, 385
ErhI	CCWWGG	3 cut(s)	129, 237, 351
Esp3I	CGTCTC	2 cut(s)	146, 575
FaeI	CATG	5 cut(s)	172, 241, 355, 397, 412
FaiI	YATR	5 cut(s)	170, 239, 353, 395, 410
FatI	CATG	5 cut(s)	168, 237, 351, 393, 408
FauI	CCCGC	2 cut(s)	188, 476
FblI	GTMKAC	1 cut(s)	243
FokI	GGATG	2 cut(s)	85, 481
GlaI	GCGC	6 cut(s)	136, 138, 289, 331, 385, 609
GsuI	CTGGAG	2 cut(s)	293, 597
HaeII	RGCGCY	2 cut(s)	333, 387
HaeIII	GGCC	7 cut(s)	80, 95, 161, 293, 324, 371, 487
HapII	CCGG	5 cut(s)	35, 285, 297, 387, 492
HgaI	GACGC	2 cut(s)	128, 172
HhaI	GCGC	6 cut(s)	137, 139, 290, 332, 386, 610
Hin1I	GRCGYC	2 cut(s)	330, 384
Hin1II	CATG	5 cut(s)	172, 241, 355, 397, 412
Hin6I	GCGC	6 cut(s)	135, 137, 288, 330, 384, 608
HinP1I	GCGC	6 cut(s)	135, 137, 288, 330, 384, 608
HindIII	AAGCTT	1 cut(s)	193
HinfI	GANTC	2 cut(s)	42, 213
HpaII	CCGG	5 cut(s)	35, 285, 297, 387, 492
HphI	GGTGA	1 cut(s)	448
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	1 cut(s)	499
Hpy188III	TCNNGA	6 cut(s)	11, 23, 70, 310, 409, 595
Hpy8I	GTNNAC	1 cut(s)	244
Hpy99I	CGWCG	4 cut(s)	56, 149, 188, 568
HpyAV	CCTTC	5 cut(s)	76, 106, 235, 374, 580
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	1 cut(s)	234
HpyF10VI	GCNNNNNNNGC	7 cut(s)	290, 344, 424, 427, 469, 576, 616
HpyF3I	CTNAG	2 cut(s)	496, 558
HpySE526I	ACGT	1 cut(s)	54
Hsp92I	GRCGYC	2 cut(s)	330, 384
Hsp92II	CATG	5 cut(s)	172, 241, 355, 397, 412
HspAI	GCGC	6 cut(s)	135, 137, 288, 330, 384, 608
KasI	GGCGCC	2 cut(s)	329, 383
KroI	GCCGGC	1 cut(s)	284
KroNI	GCCGGC	1 cut(s)	286
Kzo9I	GATC	3 cut(s)	375, 390, 445
LmnI	GCTCC	4 cut(s)	25, 62, 158, 512
Lsp1109I	GCAGC	5 cut(s)	430, 433, 436, 439, 582
LweI	GCATC	4 cut(s)	123, 303, 459, 595
MaeII	ACGT	1 cut(s)	54
MalI	GATC	3 cut(s)	377, 392, 447
MboI	GATC	3 cut(s)	375, 390, 445
MboII	GAAGA	2 cut(s)	208, 512
MflI	RGATCY	1 cut(s)	445
MhlI	GDGCHC	1 cut(s)	35
Mly113I	GGCGCC	2 cut(s)	330, 384
MlyI	GAGTC	1 cut(s)	207
MreI	CGCCGGCG	1 cut(s)	284
MroNI	GCCGGC	1 cut(s)	284
MspA1I	CMGCKG	1 cut(s)	573
MspI	CCGG	5 cut(s)	35, 285, 297, 387, 492
MspR9I	CCNGG	8 cut(s)	35, 47, 158, 268, 388, 450, 465, 492
MvaI	CCWGG	5 cut(s)	47, 158, 268, 450, 465
MvnI	CGCG	5 cut(s)	137, 139, 183, 290, 338
MwoI	GCNNNNNNNGC	7 cut(s)	290, 344, 424, 427, 469, 576, 616
NaeI	GCCGGC	1 cut(s)	286
NarI	GGCGCC	2 cut(s)	330, 384
NciI	CCSGG	3 cut(s)	35, 388, 492
NcoI	CCATGG	2 cut(s)	237, 351
NdeII	GATC	3 cut(s)	375, 390, 445
NgoMIV	GCCGGC	1 cut(s)	284
NlaIII	CATG	5 cut(s)	172, 241, 355, 397, 412
NlaIV	GGNNCC	8 cut(s)	27, 64, 79, 154, 264, 331, 385, 447
NmeAIII	GCCGAG	1 cut(s)	306
PaeR7I	CTCGAG	1 cut(s)	593
PagI	TCATGA	1 cut(s)	408
PauI	GCGCGC	1 cut(s)	135
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PdiI	GCCGGC	1 cut(s)	286
PfeI	GAWTC	1 cut(s)	42
PfoI	TCCNGGA	1 cut(s)	45
PleI	GAGTC	1 cut(s)	207
PluTI	GGCGCC	2 cut(s)	333, 387
PpsI	GAGTC	1 cut(s)	207
PpuMI	RGGWCCY	2 cut(s)	262, 589
PshAI	GACNNNNGTC	1 cut(s)	587
Psp5II	RGGWCCY	2 cut(s)	262, 589
Psp6I	CCWGG	5 cut(s)	45, 156, 266, 448, 463
PspGI	CCWGG	5 cut(s)	45, 156, 266, 448, 463
PspN4I	GGNNCC	8 cut(s)	27, 64, 79, 154, 264, 331, 385, 447
PspPI	GGNCC	7 cut(s)	78, 262, 322, 342, 370, 485, 589
PspPPI	RGGWCCY	2 cut(s)	262, 589
PsuI	RGATCY	1 cut(s)	445
PteI	GCGCGC	1 cut(s)	135
Sau3AI	GATC	3 cut(s)	375, 390, 445
Sau96I	GGNCC	7 cut(s)	78, 262, 322, 342, 370, 485, 589
SchI	GAGTC	1 cut(s)	207
ScrFI	CCNGG	8 cut(s)	35, 47, 158, 268, 388, 450, 465, 492
SduI	GDGCHC	1 cut(s)	35
SetI	ASST	7 cut(s)	57, 197, 227, 249, 344, 509, 591
SfaNI	GCATC	4 cut(s)	123, 303, 459, 595
SfoI	GGCGCC	2 cut(s)	331, 385
Sfr274I	CTCGAG	1 cut(s)	593
SgrAI	CRCCGGYG	2 cut(s)	284, 296
SinI	GGWCC	3 cut(s)	262, 342, 589
SlaI	CTCGAG	1 cut(s)	593
SmlI	CTYRAG	1 cut(s)	593
SmoI	CTYRAG	1 cut(s)	593
SspDI	GGCGCC	2 cut(s)	329, 383
StyD4I	CCNGG	8 cut(s)	33, 45, 156, 266, 386, 448, 463, 490
StyI	CCWWGG	3 cut(s)	129, 237, 351
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	3 cut(s)	228, 378, 594
TauI	GCSGC	7 cut(s)	95, 153, 293, 303, 319, 350, 475
TfiI	GAWTC	1 cut(s)	42
TscAI	CASTG	1 cut(s)	621
TseI	GCWGC	5 cut(s)	418, 421, 424, 427, 570
TspDTI	ATGAA	2 cut(s)	94, 185
TspGWI	ACGGA	1 cut(s)	502
TspRI	CASTG	1 cut(s)	621
VpaK11BI	GGWCC	3 cut(s)	262, 342, 589
XhoI	CTCGAG	1 cut(s)	593
XmiI	GTMKAC	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.