Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001914

Physical Location & Seq

Genomic Coordinates Forward (+)

24324662 .. 24330076

Gene Structure 5415 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G283200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGGAACTCCAGAAACTTCTCGAGAACCGTGCCCCGACCGCATCCTCGACGACATCGGCGGCGCCTTCGGCATGGGGGCTGTCGGCGGCTCCGCCTTCCACTTCCTCAAGGGCGTCTACAACTCCCCCTCCGGCACTCGGCTCATCGGCGGCTCGCAAGCCGTGCGCATGAACGCGCCGCGAGTCGGCGGTAGCTTCGCCGTCTGGGGTGGCCTCTTCTCCGCCTTCGACTGCACCATGGTCTATGTCCGCCAGAAGGAGGACCCCTGGAACTCTATCATCGCCGGCGCCGCCACCGGTGGCTTCCTCCAGATGCGACAGGGCCTCGGCGCCTCGGCTCGATCGGCTGCCTTCGGTGGGGTCCTCCTGGCTCTGATCGAAGGAGCTGGGATCATGCTTAATAAGTTCATGAGCCAGCAGCAGCAGATGCCTATTGTGATTGAAGAGCCGGCGAGCGTGGCCGGTTTGCCTGGGCTTCCTCCTATGGGCCGTGCTCCGGGTCAGCCGGGCTCGGAGCCGGCAACGTCGGTTAGCAGCAGCGGGGCTGAGGCTAGTTCAGGAGGGTGGCTTGGAGGGTGGTTCGGGAAGAGCAAGGAGCCTGAGGCTAAGAGTAGCGGAAGCGAGACAAAGATTTTGGAGAGCTTCGATGCCCCGCCCATGCCCAGCTTCGAGTACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098573 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

227

Amino Acids

23.28

Weight (kDa)

5.5

Isoelectric Point (pI)

58.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20350 AT2G37410 AT2G37410
fragaria_vesca	FvH4_1g06160 FvH4_1g06160 FvH4_1g06160 FvH4_3g20950 FvH4_6g21710 FvH4_6g25200 FvH4_6g30630 FvH4_7g25780
malus_domestica	MD02G1065800.v1.1 MD15G1196700.v1.1
prunus_persica	Prupe.4G283200_v2.0.a1 Prupe.5G013800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0091921 RchiOBHm_Chr2g0091931 RchiOBHm_Chr2g0091941 RchiOBHm_Chr3g0491401
rosa_laevigata	RLG00000016261 RLG00000022844 RLG00000033645
rosa_multiflora	Rmu_co8243085.1_g000001 Rmu_sc0006034.1_g000002 Rmu_sc0031557.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149600 Rroxscaffold_2G00149610
rosa_rugosa	Rorug01G0286100 Rorug02G0021700 Rorug03G0249200
rosa_samantha	Rh2AG067300 Rh2BG066500 Rh2BG066600 Rh2CG067800 Rh2CG067900 Rh2DG066400 Rh3BG334400 Rh3CG331400 Rh3DG332900 Rh4BG045200 Rh6AG042000 Rh6DG310700 Rh7BG337600 Rh7BG370600
rosa_wichuraiana	Rw2G005370 Rw3G026340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	167
AccB1I	GGYRCC	3 cut(s)	62, 287, 329
AccI	GTMKAC	1 cut(s)	117
AccII	CGCG	2 cut(s)	176, 181
AclWI	GGATC	1 cut(s)	398
AcoI	YGGCCR	1 cut(s)	459
AcyI	GRCGYC	4 cut(s)	63, 114, 288, 330
AfaI	GTAC	1 cut(s)	674
AfiI	CCNNNNNNNGG	7 cut(s)	138, 185, 256, 259, 357, 485, 496
AgeI	ACCGGT	1 cut(s)	296
AgsI	TTSAA	1 cut(s)	443
AjnI	CCWGG	3 cut(s)	266, 366, 469
AluBI	AGCT	4 cut(s)	195, 386, 642, 666
AluI	AGCT	4 cut(s)	195, 386, 642, 666
Alw21I	GWGCWC	1 cut(s)	496
Alw26I	GTCTC	1 cut(s)	617
AlwI	GGATC	1 cut(s)	398
Ama87I	CYCGRG	1 cut(s)	21
AoxI	GGCC	4 cut(s)	211, 322, 459, 487
ApeKI	GCWGC	5 cut(s)	347, 418, 421, 534, 537
ArsI	GACNNNNNNTTYG	2 cut(s)	616, 648
AsiGI	ACCGGT	1 cut(s)	296
AspLEI	GCGC	5 cut(s)	65, 168, 178, 290, 332
AspS9I	GGNCC	4 cut(s)	262, 322, 361, 487
AsuC2I	CCSGG	2 cut(s)	498, 507
AvaI	CYCGRG	1 cut(s)	21
AvaII	GGWCC	2 cut(s)	262, 361
AxyI	CCTNAGG	1 cut(s)	600
BaeGI	GKGCMC	1 cut(s)	35
BanI	GGYRCC	3 cut(s)	62, 287, 329
BanII	GRGCYC	1 cut(s)	512
Bbv12I	GWGCWC	1 cut(s)	496
BbvCI	CCTCAGC	1 cut(s)	546
BbvI	GCAGC	5 cut(s)	334, 430, 433, 546, 549
BceAI	ACGGC	3 cut(s)	146, 185, 474
BcgI	CGANNNNNNTGC	2 cut(s)	12, 46
BciT130I	CCWGG	3 cut(s)	268, 368, 471
BcnI	CCSGG	2 cut(s)	498, 507
BcoDI	GTCTC	1 cut(s)	617
BfaI	CTAG	1 cut(s)	552
BfoI	RGCGCY	3 cut(s)	66, 291, 333
Bme1390I	CCNGG	5 cut(s)	268, 368, 471, 498, 507
Bme18I	GGWCC	2 cut(s)	262, 361
BmeT110I	CYCGRG	1 cut(s)	21
BmgT120I	GGNCC	4 cut(s)	262, 322, 361, 487
BmiI	GGNNCC	8 cut(s)	64, 91, 264, 289, 331, 362, 516, 597
BmrFI	CCNGG	5 cut(s)	268, 368, 471, 498, 507
BmsI	GCATC	4 cut(s)	51, 303, 417, 637
BpmI	CTGGAG	1 cut(s)	293
Bpu10I	CCTNAGC	1 cut(s)	546
BpuEI	CTTGAG	1 cut(s)	92
BpuMI	CCSGG	2 cut(s)	498, 507
BsaHI	GRCGYC	4 cut(s)	63, 114, 288, 330
BsaJI	CCNNGG	5 cut(s)	237, 266, 325, 333, 470
BsaWI	WCCGGW	1 cut(s)	296
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bsc4I	CCNNNNNNNGG	7 cut(s)	138, 185, 256, 259, 357, 485, 496
Bse118I	RCCGGY	5 cut(s)	284, 296, 448, 461, 517
Bse21I	CCTNAGG	1 cut(s)	600
BseBI	CCWGG	3 cut(s)	268, 368, 471
BseDI	CCNNGG	5 cut(s)	237, 266, 325, 333, 470
BseGI	GGATG	1 cut(s)	42
BseLI	CCNNNNNNNGG	7 cut(s)	138, 185, 256, 259, 357, 485, 496
BseMII	CTCAG	2 cut(s)	537, 591
BseSI	GKGCMC	1 cut(s)	35
BseXI	GCAGC	5 cut(s)	334, 430, 433, 546, 549
BseYI	CCCAGC	2 cut(s)	386, 662
BsgI	GTGCAG	1 cut(s)	217
Bsh1236I	CGCG	2 cut(s)	176, 181
Bsh1285I	CGRYCG	2 cut(s)	40, 344
BshFI	GGCC	4 cut(s)	213, 324, 461, 489
BshNI	GGYRCC	3 cut(s)	62, 287, 329
BshTI	ACCGGT	1 cut(s)	296
BsiEI	CGRYCG	2 cut(s)	40, 344
BsiHKAI	GWGCWC	1 cut(s)	496
BsiHKCI	CYCGRG	1 cut(s)	21
BsiSI	CCGG	8 cut(s)	132, 285, 297, 449, 462, 497, 506, 518
BslI	CCNNNNNNNGG	7 cut(s)	138, 185, 256, 259, 357, 485, 496
BsmAI	GTCTC	1 cut(s)	617
BsnI	GGCC	4 cut(s)	213, 324, 461, 489
BsoBI	CYCGRG	1 cut(s)	21
Bsp1286I	GDGCHC	3 cut(s)	35, 496, 512
Bsp143I	GATC	3 cut(s)	341, 375, 390
Bsp19I	CCATGG	1 cut(s)	237
BspANI	GGCC	4 cut(s)	213, 324, 461, 489
BspCNI	CTCAG	2 cut(s)	538, 592
BspFNI	CGCG	2 cut(s)	176, 181
BspHI	TCATGA	1 cut(s)	408
BspLI	GGNNCC	8 cut(s)	64, 91, 264, 289, 331, 362, 516, 597
BspPI	GGATC	1 cut(s)	398
BspQI	GCTCTTC	2 cut(s)	438, 581
BspT107I	GGYRCC	3 cut(s)	62, 287, 329
BsrFI	RCCGGY	5 cut(s)	284, 296, 448, 461, 517
BssAI	RCCGGY	5 cut(s)	284, 296, 448, 461, 517
BssECI	CCNNGG	5 cut(s)	237, 266, 325, 333, 470
BssMI	GATC	3 cut(s)	341, 375, 390
BssNI	GRCGYC	4 cut(s)	63, 114, 288, 330
BssT1I	CCWWGG	1 cut(s)	237
Bst2UI	CCWGG	3 cut(s)	268, 368, 471
Bst4CI	ACNGT	1 cut(s)	30
Bst6I	CTCTTC	3 cut(s)	221, 438, 581
BstACI	GRCGYC	4 cut(s)	63, 114, 288, 330
BstAPI	GCANNNNNTGC	2 cut(s)	163, 427
BstC8I	GCNNGC	7 cut(s)	155, 159, 286, 416, 450, 454, 519
BstDEI	CTNAG	3 cut(s)	546, 600, 606
BstDSI	CCRYGG	1 cut(s)	237
BstF5I	GGATG	1 cut(s)	42
BstFNI	CGCG	2 cut(s)	176, 181
BstH2I	RGCGCY	3 cut(s)	66, 291, 333
BstHHI	GCGC	5 cut(s)	65, 168, 178, 290, 332
BstKTI	GATC	3 cut(s)	344, 378, 393
BstMAI	GTCTC	1 cut(s)	617
BstMBI	GATC	3 cut(s)	341, 375, 390
BstMCI	CGRYCG	2 cut(s)	40, 344
BstMWI	GCNNNNNNNGC	7 cut(s)	39, 69, 163, 290, 344, 427, 458
BstNI	CCWGG	3 cut(s)	268, 368, 471
BstSCI	CCNGG	5 cut(s)	266, 366, 469, 496, 505
BstSLI	GKGCMC	1 cut(s)	35
BstUI	CGCG	2 cut(s)	176, 181
BstV1I	GCAGC	5 cut(s)	334, 430, 433, 546, 549
Bsu36I	CCTNAGG	1 cut(s)	600
BsuRI	GGCC	4 cut(s)	213, 324, 461, 489
BtgI	CCRYGG	1 cut(s)	237
BtgZI	GCGATG	1 cut(s)	265
BtsCI	GGATG	1 cut(s)	42
Cac8I	GCNNGC	7 cut(s)	155, 159, 286, 416, 450, 454, 519
CciI	TCATGA	1 cut(s)	408
CfoI	GCGC	5 cut(s)	65, 168, 178, 290, 332
Cfr10I	RCCGGY	5 cut(s)	284, 296, 448, 461, 517
Cfr13I	GGNCC	4 cut(s)	262, 322, 361, 487
CseI	GACGC	1 cut(s)	103
Csp6I	GTAC	1 cut(s)	673
CspAI	ACCGGT	1 cut(s)	296
CviAII	CATG	6 cut(s)	73, 169, 238, 394, 409, 658
CviQI	GTAC	1 cut(s)	673
DdeI	CTNAG	3 cut(s)	546, 600, 606
DinI	GGCGCC	3 cut(s)	64, 289, 331
DpnI	GATC	3 cut(s)	343, 377, 392
DpnII	GATC	3 cut(s)	341, 375, 390
EaeI	YGGCCR	1 cut(s)	459
Eam1104I	CTCTTC	3 cut(s)	221, 438, 581
EarI	CTCTTC	3 cut(s)	221, 438, 581
EciI	GGCGGA	3 cut(s)	82, 211, 239
Eco130I	CCWWGG	1 cut(s)	237
Eco24I	GRGCYC	1 cut(s)	512
Eco47I	GGWCC	2 cut(s)	262, 361
Eco81I	CCTNAGG	1 cut(s)	600
Eco88I	CYCGRG	1 cut(s)	21
EcoO109I	RGGNCCY	3 cut(s)	262, 322, 361
EcoRII	CCWGG	3 cut(s)	266, 366, 469
EcoT14I	CCWWGG	1 cut(s)	237
EcoT38I	GRGCYC	1 cut(s)	512
EgeI	GGCGCC	3 cut(s)	64, 289, 331
EheI	GGCGCC	3 cut(s)	64, 289, 331
ErhI	CCWWGG	1 cut(s)	237
FaeI	CATG	6 cut(s)	76, 172, 241, 397, 412, 661
FaiI	YATR	8 cut(s)	74, 170, 239, 246, 395, 410, 485, 659
FatI	CATG	6 cut(s)	72, 168, 237, 393, 408, 657
FauI	CCCGC	2 cut(s)	533, 660
FblI	GTMKAC	1 cut(s)	117
FokI	GGATG	1 cut(s)	29
FriOI	GRGCYC	1 cut(s)	512
FspAI	RTGCGCAY	1 cut(s)	167
FspBI	CTAG	1 cut(s)	552
FspI	TGCGCA	1 cut(s)	167
GlaI	GCGC	5 cut(s)	64, 167, 177, 289, 331
GsaI	CCCAGC	2 cut(s)	390, 666
GsuI	CTGGAG	1 cut(s)	293
HaeII	RGCGCY	3 cut(s)	66, 291, 333
HaeIII	GGCC	4 cut(s)	213, 324, 461, 489
HapII	CCGG	8 cut(s)	132, 285, 297, 449, 462, 497, 506, 518
HgaI	GACGC	1 cut(s)	103
HhaI	GCGC	5 cut(s)	65, 168, 178, 290, 332
Hin1I	GRCGYC	4 cut(s)	63, 114, 288, 330
Hin1II	CATG	6 cut(s)	76, 172, 241, 397, 412, 661
Hin6I	GCGC	5 cut(s)	63, 166, 176, 288, 330
HinP1I	GCGC	5 cut(s)	63, 166, 176, 288, 330
HinfI	GANTC	1 cut(s)	183
HpaII	CCGG	8 cut(s)	132, 285, 297, 449, 462, 497, 506, 518
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	2 cut(s)	375, 514
Hpy188III	TCNNGA	7 cut(s)	11, 21, 23, 310, 409, 558, 583
Hpy8I	GTNNAC	1 cut(s)	118
Hpy99I	CGWCG	2 cut(s)	53, 529
HpyAV	CCTTC	6 cut(s)	76, 106, 235, 250, 361, 374
HpyCH4III	ACNGT	1 cut(s)	30
HpyCH4IV	ACGT	1 cut(s)	524
HpyCH4V	TGCA	1 cut(s)	234
HpyF10VI	GCNNNNNNNGC	7 cut(s)	39, 69, 163, 290, 344, 427, 458
HpyF3I	CTNAG	3 cut(s)	546, 600, 606
HpySE526I	ACGT	1 cut(s)	524
Hsp92I	GRCGYC	4 cut(s)	63, 114, 288, 330
Hsp92II	CATG	6 cut(s)	76, 172, 241, 397, 412, 661
HspAI	GCGC	5 cut(s)	63, 166, 176, 288, 330
KasI	GGCGCC	3 cut(s)	62, 287, 329
KroI	GCCGGC	3 cut(s)	284, 448, 517
KroNI	GCCGGC	3 cut(s)	286, 450, 519
Kzo9I	GATC	3 cut(s)	341, 375, 390
LguI	GCTCTTC	2 cut(s)	438, 581
LmnI	GCTCC	5 cut(s)	95, 383, 499, 514, 595
Lsp1109I	GCAGC	5 cut(s)	334, 430, 433, 546, 549
LweI	GCATC	4 cut(s)	51, 303, 417, 637
MaeI	CTAG	1 cut(s)	552
MaeII	ACGT	1 cut(s)	524
MalI	GATC	3 cut(s)	343, 377, 392
MboI	GATC	3 cut(s)	341, 375, 390
MboII	GAAGA	3 cut(s)	208, 455, 598
MhlI	GDGCHC	3 cut(s)	35, 496, 512
Mly113I	GGCGCC	3 cut(s)	63, 288, 330
MlyI	GAGTC	1 cut(s)	192
MreI	CGCCGGCG	1 cut(s)	284
MroNI	GCCGGC	3 cut(s)	284, 448, 517
MseI	TTAA	1 cut(s)	399
MspA1I	CMGCKG	1 cut(s)	540
MspI	CCGG	8 cut(s)	132, 285, 297, 449, 462, 497, 506, 518
MspR9I	CCNGG	5 cut(s)	268, 368, 471, 498, 507
MvaI	CCWGG	3 cut(s)	268, 368, 471
MvnI	CGCG	2 cut(s)	176, 181
MwoI	GCNNNNNNNGC	7 cut(s)	39, 69, 163, 290, 344, 427, 458
NaeI	GCCGGC	3 cut(s)	286, 450, 519
NarI	GGCGCC	3 cut(s)	63, 288, 330
NciI	CCSGG	2 cut(s)	498, 507
NcoI	CCATGG	1 cut(s)	237
NdeII	GATC	3 cut(s)	341, 375, 390
NgoMIV	GCCGGC	3 cut(s)	284, 448, 517
NlaIII	CATG	6 cut(s)	76, 172, 241, 397, 412, 661
NlaIV	GGNNCC	8 cut(s)	64, 91, 264, 289, 331, 362, 516, 597
NmeAIII	GCCGAG	3 cut(s)	118, 306, 314
NsbI	TGCGCA	1 cut(s)	167
PaeR7I	CTCGAG	1 cut(s)	21
PagI	TCATGA	1 cut(s)	408
PciSI	GCTCTTC	2 cut(s)	438, 581
PdiI	GCCGGC	3 cut(s)	286, 450, 519
PinAI	ACCGGT	1 cut(s)	296
Ple19I	CGATCG	1 cut(s)	344
PleI	GAGTC	1 cut(s)	191
PluTI	GGCGCC	3 cut(s)	66, 291, 333
PpsI	GAGTC	1 cut(s)	191
PpuMI	RGGWCCY	2 cut(s)	262, 361
Psp5II	RGGWCCY	2 cut(s)	262, 361
Psp6I	CCWGG	3 cut(s)	266, 366, 469
PspFI	CCCAGC	2 cut(s)	386, 662
PspGI	CCWGG	3 cut(s)	266, 366, 469
PspN4I	GGNNCC	8 cut(s)	64, 91, 264, 289, 331, 362, 516, 597
PspPI	GGNCC	4 cut(s)	262, 322, 361, 487
PspPPI	RGGWCCY	2 cut(s)	262, 361
PvuI	CGATCG	1 cut(s)	344
RsaI	GTAC	1 cut(s)	674
RsaNI	GTAC	1 cut(s)	673
SapI	GCTCTTC	2 cut(s)	438, 581
SaqAI	TTAA	1 cut(s)	399
Sau3AI	GATC	3 cut(s)	341, 375, 390
Sau96I	GGNCC	4 cut(s)	262, 322, 361, 487
SchI	GAGTC	1 cut(s)	192
ScrFI	CCNGG	5 cut(s)	268, 368, 471, 498, 507
SduI	GDGCHC	3 cut(s)	35, 496, 512
SetI	ASST	5 cut(s)	197, 388, 527, 644, 668
SfaNI	GCATC	4 cut(s)	51, 303, 417, 637
SfoI	GGCGCC	3 cut(s)	64, 289, 331
Sfr274I	CTCGAG	1 cut(s)	21
SgrAI	CRCCGGYG	2 cut(s)	284, 296
SinI	GGWCC	2 cut(s)	262, 361
SlaI	CTCGAG	1 cut(s)	21
SmlI	CTYRAG	2 cut(s)	21, 107
SmoI	CTYRAG	2 cut(s)	21, 107
SspDI	GGCGCC	3 cut(s)	62, 287, 329
SspMI	CTAG	1 cut(s)	552
StyD4I	CCNGG	5 cut(s)	266, 366, 469, 496, 505
StyI	CCWWGG	1 cut(s)	237
TaaI	ACNGT	1 cut(s)	30
TaiI	ACGT	1 cut(s)	527
TaqI	TCGA	7 cut(s)	22, 48, 228, 340, 378, 645, 669
TatI	WGTACW	1 cut(s)	672
TauI	GCSGC	5 cut(s)	63, 90, 153, 181, 293
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TseI	GCWGC	5 cut(s)	347, 418, 421, 534, 537
TspDTI	ATGAA	2 cut(s)	185, 397
VpaK11BI	GGWCC	2 cut(s)	262, 361
XhoI	CTCGAG	1 cut(s)	21
XmiI	GTMKAC	1 cut(s)	117
XspI	CTAG	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.