Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001914

Physical Location & Seq

Genomic Coordinates Forward (+)

19657454 .. 19659195

Gene Structure 1742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g25780.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGAGGACCCTGCTGCTGGTATGGCAGGTCTGCCTGGGCCGGAGGCGGAGGGAAGCTCCTCCTCCGTTGGTTCGTGGTTGGGAGGGTGGTTTGGGAAAGGGAAAGAGGTTGAGGCGGTGGCGAGCAGCGGAAGCGAGACCATGATTCTGGAGAGTTTCGATGCGCCTCCGGTGCCGAGTTATGACTACAAGTTAAGATCACGTAAATTCCGATGGCATTTAAAAAAATCCAGTGAGATTTCCGGAAAATTCCGGCCACCGGATGCCGGCAATTTTCCGGCCGTCGGAAAATTCCGGTCACCGGAGTTCGGAGTCCGGCGACCGGAGTTCGGAGTCCGGCGACCGGAGTTCGGAGTCCGGCGACCGAAATGTGGCCGCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098573 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

128

Amino Acids

13.9

Weight (kDa)

9.92

Isoelectric Point (pI)

89.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20350 AT2G37410 AT2G37410
fragaria_vesca	FvH4_1g06160 FvH4_1g06160 FvH4_1g06160 FvH4_3g20950 FvH4_6g21710 FvH4_6g25200 FvH4_6g30630 FvH4_7g25780
malus_domestica	MD02G1065800.v1.1 MD15G1196700.v1.1
prunus_persica	Prupe.4G283200_v2.0.a1 Prupe.5G013800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0091921 RchiOBHm_Chr2g0091931 RchiOBHm_Chr2g0091941 RchiOBHm_Chr3g0491401
rosa_laevigata	RLG00000016261 RLG00000022844 RLG00000033645
rosa_multiflora	Rmu_co8243085.1_g000001 Rmu_sc0006034.1_g000002 Rmu_sc0031557.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149600 Rroxscaffold_2G00149610
rosa_rugosa	Rorug01G0286100 Rorug02G0021700 Rorug03G0249200
rosa_samantha	Rh2AG067300 Rh2BG066500 Rh2BG066600 Rh2CG067800 Rh2CG067900 Rh2DG066400 Rh3BG334400 Rh3CG331400 Rh3DG332900 Rh4BG045200 Rh6AG042000 Rh6DG310700 Rh7BG337600 Rh7BG370600
rosa_wichuraiana	Rw2G005370 Rw3G026340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	17
AccB1I	GGYRCC	1 cut(s)	172
AccIII	TCCGGA	1 cut(s)	242
AciI	CCGC	4 cut(s)	47, 116, 129, 376
AcoI	YGGCCR	3 cut(s)	254, 279, 373
AcsI	RAATTY	3 cut(s)	206, 248, 290
AjnI	CCWGG	1 cut(s)	34
AluBI	AGCT	1 cut(s)	57
AluI	AGCT	1 cut(s)	57
Alw26I	GTCTC	1 cut(s)	131
Aor13HI	TCCGGA	1 cut(s)	242
AoxI	GGCC	4 cut(s)	38, 254, 279, 373
ApeKI	GCWGC	2 cut(s)	14, 126
ApoI	RAATTY	3 cut(s)	206, 248, 290
AspLEI	GCGC	1 cut(s)	166
AspS9I	GGNCC	2 cut(s)	7, 38
AsuHPI	GGTGA	1 cut(s)	291
AvaII	GGWCC	1 cut(s)	7
BanI	GGYRCC	1 cut(s)	172
BbvI	GCAGC	1 cut(s)	138
BccI	CCATC	1 cut(s)	207
BceAI	ACGGC	1 cut(s)	266
BciT130I	CCWGG	1 cut(s)	36
BcoDI	GTCTC	1 cut(s)	131
BfuAI	ACCTGC	1 cut(s)	17
BisI	GCNGC	3 cut(s)	15, 127, 376
BlsI	GCNGC	3 cut(s)	16, 128, 377
Bme1390I	CCNGG	1 cut(s)	36
Bme18I	GGWCC	1 cut(s)	7
BmgT120I	GGNCC	2 cut(s)	7, 38
BmiI	GGNNCC	2 cut(s)	9, 174
BmrFI	CCNGG	1 cut(s)	36
BmsI	GCATC	2 cut(s)	151, 253
BplI	GAGNNNNNCTC	2 cut(s)	41, 73
BpmI	CTGGAG	1 cut(s)	170
BsaAI	YACGTR	1 cut(s)	203
BsaI	GGTCTC	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	35
BsaWI	WCCGGW	7 cut(s)	169, 242, 259, 294, 301, 322, 343
Bse118I	RCCGGY	2 cut(s)	266, 378
Bse1I	ACTGG	1 cut(s)	231
BseAI	TCCGGA	1 cut(s)	242
BseBI	CCWGG	1 cut(s)	36
BseDI	CCNNGG	1 cut(s)	35
BseGI	GGATG	1 cut(s)	268
BseNI	ACTGG	1 cut(s)	231
BseRI	GAGGAG	2 cut(s)	49, 52
BseX3I	CGGCCG	1 cut(s)	279
BseXI	GCAGC	1 cut(s)	138
Bsh1285I	CGRYCG	4 cut(s)	282, 323, 344, 365
BshFI	GGCC	4 cut(s)	40, 256, 281, 375
BshNI	GGYRCC	1 cut(s)	172
BsiEI	CGRYCG	4 cut(s)	282, 323, 344, 365
BsmAI	GTCTC	1 cut(s)	131
BsnI	GGCC	4 cut(s)	40, 256, 281, 375
Bso31I	GGTCTC	1 cut(s)	131
Bsp13I	TCCGGA	1 cut(s)	242
Bsp143I	GATC	1 cut(s)	197
BspACI	CCGC	4 cut(s)	47, 116, 129, 376
BspANI	GGCC	4 cut(s)	40, 256, 281, 375
BspEI	TCCGGA	1 cut(s)	242
BspLI	GGNNCC	2 cut(s)	9, 174
BspMI	ACCTGC	1 cut(s)	17
BspT107I	GGYRCC	1 cut(s)	172
BspTNI	GGTCTC	1 cut(s)	131
BsrFI	RCCGGY	2 cut(s)	266, 378
BsrI	ACTGG	1 cut(s)	231
BssAI	RCCGGY	2 cut(s)	266, 378
BssECI	CCNNGG	1 cut(s)	35
BssMI	GATC	1 cut(s)	197
Bst2UI	CCWGG	1 cut(s)	36
BstBAI	YACGTR	1 cut(s)	203
BstC8I	GCNNGC	2 cut(s)	124, 268
BstEII	GGTNACC	1 cut(s)	297
BstF5I	GGATG	1 cut(s)	268
BstHHI	GCGC	1 cut(s)	166
BstKTI	GATC	1 cut(s)	200
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	1 cut(s)	197
BstMCI	CGRYCG	4 cut(s)	282, 323, 344, 365
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 132, 172
BstNI	CCWGG	1 cut(s)	36
BstPI	GGTNACC	1 cut(s)	297
BstSCI	CCNGG	1 cut(s)	34
BstV1I	GCAGC	1 cut(s)	138
BstXI	CCANNNNNNTGG	1 cut(s)	148
BstZI	CGGCCG	1 cut(s)	279
BsuRI	GGCC	4 cut(s)	40, 256, 281, 375
BtsCI	GGATG	1 cut(s)	268
BtsIMutI	CAGTG	1 cut(s)	238
BveI	ACCTGC	1 cut(s)	17
Cac8I	GCNNGC	2 cut(s)	124, 268
CfoI	GCGC	1 cut(s)	166
Cfr10I	RCCGGY	2 cut(s)	266, 378
Cfr13I	GGNCC	2 cut(s)	7, 38
CviAII	CATG	1 cut(s)	142
CviJI	RGCY	5 cut(s)	40, 57, 256, 281, 375
CviKI_1	RGCY	5 cut(s)	40, 57, 256, 281, 375
DpnI	GATC	1 cut(s)	199
DpnII	GATC	1 cut(s)	197
DraI	TTTAAA	1 cut(s)	222
EaeI	YGGCCR	3 cut(s)	254, 279, 373
EagI	CGGCCG	1 cut(s)	279
EciI	GGCGGA	1 cut(s)	62
EclXI	CGGCCG	1 cut(s)	279
Eco31I	GGTCTC	1 cut(s)	131
Eco47I	GGWCC	1 cut(s)	7
Eco52I	CGGCCG	1 cut(s)	279
Eco91I	GGTNACC	1 cut(s)	297
EcoO109I	RGGNCCY	1 cut(s)	7
EcoO65I	GGTNACC	1 cut(s)	297
EcoRII	CCWGG	1 cut(s)	34
FaeI	CATG	1 cut(s)	145
FaiI	YATR	3 cut(s)	23, 143, 183
FatI	CATG	1 cut(s)	141
Fnu4HI	GCNGC	3 cut(s)	15, 127, 376
FokI	GGATG	1 cut(s)	275
Fsp4HI	GCNGC	3 cut(s)	15, 127, 376
GlaI	GCGC	1 cut(s)	165
GluI	GCNGC	3 cut(s)	15, 127, 376
GsuI	CTGGAG	1 cut(s)	170
HaeIII	GGCC	4 cut(s)	40, 256, 281, 375
HhaI	GCGC	1 cut(s)	166
Hin1II	CATG	1 cut(s)	145
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
HinfI	GANTC	4 cut(s)	145, 312, 333, 354
HphI	GGTGA	1 cut(s)	291
Hpy188I	TCNGA	5 cut(s)	212, 287, 311, 332, 353
Hpy188III	TCNNGA	2 cut(s)	149, 243
Hpy99I	CGWCG	1 cut(s)	287
HpyCH4IV	ACGT	1 cut(s)	202
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 132, 172
HpySE526I	ACGT	1 cut(s)	202
Hsp92II	CATG	1 cut(s)	145
HspAI	GCGC	1 cut(s)	164
Kpn2I	TCCGGA	1 cut(s)	242
KroI	GCCGGC	1 cut(s)	266
KroNI	GCCGGC	1 cut(s)	268
Kzo9I	GATC	1 cut(s)	197
LmnI	GCTCC	1 cut(s)	62
Lsp1109I	GCAGC	1 cut(s)	138
LweI	GCATC	2 cut(s)	151, 253
MaeII	ACGT	1 cut(s)	202
MaeIII	GTNAC	1 cut(s)	297
MalI	GATC	1 cut(s)	199
MboI	GATC	1 cut(s)	197
MluCI	AATT	4 cut(s)	206, 248, 271, 290
MlyI	GAGTC	3 cut(s)	321, 342, 363
MmeI	TCCRAC	1 cut(s)	265
MnlI	CCTC	8 cut(s)	37, 43, 70, 73, 77, 100, 106, 177
MroI	TCCGGA	1 cut(s)	242
MroNI	GCCGGC	1 cut(s)	266
MseI	TTAA	2 cut(s)	194, 221
MspA1I	CMGCKG	1 cut(s)	129
MspR9I	CCNGG	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	36
MwoI	GCNNNNNNNGC	3 cut(s)	23, 132, 172
NaeI	GCCGGC	1 cut(s)	268
NdeII	GATC	1 cut(s)	197
NgoMIV	GCCGGC	1 cut(s)	266
NlaIII	CATG	1 cut(s)	145
NlaIV	GGNNCC	2 cut(s)	9, 174
NmeAIII	GCCGAG	1 cut(s)	201
NmuCI	GTSAC	1 cut(s)	297
PcsI	WCGNNNNNNNCGW	1 cut(s)	208
PdiI	GCCGGC	1 cut(s)	268
PfeI	GAWTC	1 cut(s)	145
PkrI	GCNGC	3 cut(s)	16, 128, 377
PleI	GAGTC	3 cut(s)	320, 341, 362
PpsI	GAGTC	3 cut(s)	320, 341, 362
Ppu21I	YACGTR	1 cut(s)	203
PpuMI	RGGWCCY	1 cut(s)	7
Psp5II	RGGWCCY	1 cut(s)	7
Psp6I	CCWGG	1 cut(s)	34
PspEI	GGTNACC	1 cut(s)	297
PspGI	CCWGG	1 cut(s)	34
PspN4I	GGNNCC	2 cut(s)	9, 174
PspPI	GGNCC	2 cut(s)	7, 38
PspPPI	RGGWCCY	1 cut(s)	7
SaqAI	TTAA	2 cut(s)	194, 221
SatI	GCNGC	3 cut(s)	15, 127, 376
Sau3AI	GATC	1 cut(s)	197
Sau96I	GGNCC	2 cut(s)	7, 38
SchI	GAGTC	3 cut(s)	321, 342, 363
ScrFI	CCNGG	1 cut(s)	36
SetI	ASST	4 cut(s)	31, 59, 111, 205
SfaNI	GCATC	2 cut(s)	151, 253
SgrAI	CRCCGGYG	1 cut(s)	378
SinI	GGWCC	1 cut(s)	7
Sse9I	AATT	4 cut(s)	206, 248, 271, 290
SsiI	CCGC	4 cut(s)	47, 116, 129, 376
StyD4I	CCNGG	1 cut(s)	34
TaiI	ACGT	1 cut(s)	205
TaqI	TCGA	1 cut(s)	159
TaqII	GACCGA	1 cut(s)	379
TasI	AATT	4 cut(s)	206, 248, 271, 290
TauI	GCSGC	1 cut(s)	378
TfiI	GAWTC	1 cut(s)	145
Tru1I	TTAA	2 cut(s)	194, 221
Tru9I	TTAA	2 cut(s)	194, 221
TscAI	CASTG	1 cut(s)	238
TseFI	GTSAC	1 cut(s)	297
TseI	GCWGC	2 cut(s)	14, 126
Tsp45I	GTSAC	1 cut(s)	297
TspGWI	ACGGA	1 cut(s)	55
TspRI	CASTG	1 cut(s)	238
VpaK11BI	GGWCC	1 cut(s)	7
XapI	RAATTY	3 cut(s)	206, 248, 290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.