Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001914

Physical Location & Seq

Genomic Coordinates Forward (+)

13982071 .. 13984205

Gene Structure 2135 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g20950.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGATGGAGGACCCTGCTGCAGGTATGGCAGGTCTGCCTGGGCCGGAGGCGGAGGGAAGCTCCTCCTCCGTTGGTTCGTGGTTGGGAGGGTGGTTTGGGAAAGGGAAAGAGGTTGAGGCGGCGGCGAGCAGCGGAAGCGAGACCACGATTCTGGAGAGTTTAGATGCGCCTCCGGTGCCGAGTTATGACTACAAGAAGACATATGAAGAATTGGCAGCATCGGCTGCATATAGGAAGGATTCGACCGTCGGTGCTGAGGCTGCGGCTGCTGAAAGGATGGTTGATAATGCTCGTAGAAAGTGTGTGAGGTTGTTTGTTGGTAAGAATGTTGTTTCTGGTAGGAAGACTGTTGCTGCTGCATACAAGGCACATTTGGTGACGATGATCCAACTTGAGTTTGAAGATGAGGCACCTGATCAGGTACCACACAATGAACACAACTCTGATAGGTCCCAGATCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098573 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

155

Amino Acids

16.41

Weight (kDa)

4.98

Isoelectric Point (pI)

41.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20350 AT2G37410 AT2G37410
fragaria_vesca	FvH4_1g06160 FvH4_1g06160 FvH4_1g06160 FvH4_3g20950 FvH4_6g21710 FvH4_6g25200 FvH4_6g30630 FvH4_7g25780
malus_domestica	MD02G1065800.v1.1 MD15G1196700.v1.1
prunus_persica	Prupe.4G283200_v2.0.a1 Prupe.5G013800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0091921 RchiOBHm_Chr2g0091931 RchiOBHm_Chr2g0091941 RchiOBHm_Chr3g0491401
rosa_laevigata	RLG00000016261 RLG00000022844 RLG00000033645
rosa_multiflora	Rmu_co8243085.1_g000001 Rmu_sc0006034.1_g000002 Rmu_sc0031557.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149600 Rroxscaffold_2G00149610
rosa_rugosa	Rorug01G0286100 Rorug02G0021700 Rorug03G0249200
rosa_samantha	Rh2AG067300 Rh2BG066500 Rh2BG066600 Rh2CG067800 Rh2CG067900 Rh2DG066400 Rh3BG334400 Rh3CG331400 Rh3DG332900 Rh4BG045200 Rh6AG042000 Rh6DG310700 Rh7BG337600 Rh7BG370600
rosa_wichuraiana	Rw2G005370 Rw3G026340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	11, 20
Acc65I	GGTACC	1 cut(s)	421
AccB1I	GGYRCC	3 cut(s)	175, 409, 421
AciI	CCGC	5 cut(s)	50, 119, 122, 132, 263
AclWI	GGATC	1 cut(s)	379
AfaI	GTAC	1 cut(s)	423
AfiI	CCNNNNNNNGG	1 cut(s)	20
AgsI	TTSAA	1 cut(s)	401
AjnI	CCWGG	1 cut(s)	37
AluBI	AGCT	1 cut(s)	60
AluI	AGCT	1 cut(s)	60
Alw26I	GTCTC	1 cut(s)	134
AlwI	GGATC	1 cut(s)	379
AoxI	GGCC	1 cut(s)	41
ApeKI	GCWGC	8 cut(s)	17, 129, 215, 224, 260, 266, 353, 356
Asp718I	GGTACC	1 cut(s)	421
AspLEI	GCGC	1 cut(s)	169
AspS9I	GGNCC	3 cut(s)	10, 41, 450
AsuHPI	GGTGA	1 cut(s)	388
AvaII	GGWCC	2 cut(s)	10, 450
BanI	GGYRCC	3 cut(s)	175, 409, 421
BbsI	GAAGAC	2 cut(s)	203, 350
BbvCI	CCTCAGC	1 cut(s)	255
BbvI	GCAGC	8 cut(s)	4, 141, 211, 227, 247, 253, 340, 343
BccI	CCATC	1 cut(s)	271
BciT130I	CCWGG	1 cut(s)	39
BclI	TGATCA	1 cut(s)	415
BcoDI	GTCTC	1 cut(s)	134
BfmI	CTRYAG	1 cut(s)	18
BfuAI	ACCTGC	2 cut(s)	11, 20
BglII	AGATCT	1 cut(s)	456
Bme1390I	CCNGG	1 cut(s)	39
Bme18I	GGWCC	2 cut(s)	10, 450
BmgT120I	GGNCC	3 cut(s)	10, 41, 450
BmiI	GGNNCC	5 cut(s)	12, 177, 411, 423, 452
BmrFI	CCNGG	1 cut(s)	39
BmsI	GCATC	2 cut(s)	154, 227
BpiI	GAAGAC	2 cut(s)	203, 350
BplI	GAGNNNNNCTC	2 cut(s)	44, 76
BpmI	CTGGAG	1 cut(s)	173
Bpu10I	CCTNAGC	1 cut(s)	255
BpuEI	CTTGAG	1 cut(s)	413
BsaI	GGTCTC	1 cut(s)	134
BsaJI	CCNNGG	1 cut(s)	38
BsaWI	WCCGGW	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	39
BseDI	CCNNGG	1 cut(s)	38
BseGI	GGATG	1 cut(s)	282
BseLI	CCNNNNNNNGG	1 cut(s)	20
BseMII	CTCAG	1 cut(s)	246
BseRI	GAGGAG	2 cut(s)	52, 55
BseXI	GCAGC	8 cut(s)	4, 141, 211, 227, 247, 253, 340, 343
Bsh1285I	CGRYCG	1 cut(s)	246
BshFI	GGCC	1 cut(s)	43
BshNI	GGYRCC	3 cut(s)	175, 409, 421
BsiEI	CGRYCG	1 cut(s)	246
BsiSI	CCGG	2 cut(s)	44, 173
BslFI	GGGAC	1 cut(s)	436
BslI	CCNNNNNNNGG	1 cut(s)	20
BsmAI	GTCTC	1 cut(s)	134
BsmFI	GGGAC	1 cut(s)	436
BsnI	GGCC	1 cut(s)	43
Bso31I	GGTCTC	1 cut(s)	134
Bsp143I	GATC	3 cut(s)	384, 415, 456
BspACI	CCGC	5 cut(s)	50, 119, 122, 132, 263
BspANI	GGCC	1 cut(s)	43
BspCNI	CTCAG	1 cut(s)	247
BspLI	GGNNCC	5 cut(s)	12, 177, 411, 423, 452
BspMAI	CTGCAG	1 cut(s)	22
BspMI	ACCTGC	2 cut(s)	11, 20
BspPI	GGATC	1 cut(s)	379
BspT107I	GGYRCC	3 cut(s)	175, 409, 421
BspTNI	GGTCTC	1 cut(s)	134
BssECI	CCNNGG	1 cut(s)	38
BssMI	GATC	3 cut(s)	384, 415, 456
Bst2UI	CCWGG	1 cut(s)	39
Bst4CI	ACNGT	2 cut(s)	247, 349
BstAPI	GCANNNNNTGC	1 cut(s)	224
BstC8I	GCNNGC	1 cut(s)	127
BstDEI	CTNAG	1 cut(s)	255
BstENI	CCTNNNNNAGG	1 cut(s)	18
BstF5I	GGATG	1 cut(s)	282
BstHHI	GCGC	1 cut(s)	169
BstKTI	GATC	3 cut(s)	387, 418, 459
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	3 cut(s)	384, 415, 456
BstMCI	CGRYCG	1 cut(s)	246
BstMWI	GCNNNNNNNGC	8 cut(s)	26, 135, 175, 221, 224, 260, 266, 365
BstNI	CCWGG	1 cut(s)	39
BstSCI	CCNGG	1 cut(s)	37
BstSFI	CTRYAG	1 cut(s)	18
BstV1I	GCAGC	8 cut(s)	4, 141, 211, 227, 247, 253, 340, 343
BstV2I	GAAGAC	2 cut(s)	203, 350
BstX2I	RGATCY	1 cut(s)	456
BstXI	CCANNNNNNTGG	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	456
BsuRI	GGCC	1 cut(s)	43
BtsCI	GGATG	1 cut(s)	282
BveI	ACCTGC	2 cut(s)	11, 20
Cac8I	GCNNGC	1 cut(s)	127
CfoI	GCGC	1 cut(s)	169
Cfr13I	GGNCC	3 cut(s)	10, 41, 450
Csp6I	GTAC	1 cut(s)	422
CviJI	RGCY	5 cut(s)	43, 60, 224, 260, 266
CviKI_1	RGCY	5 cut(s)	43, 60, 224, 260, 266
CviQI	GTAC	1 cut(s)	422
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	3 cut(s)	386, 417, 458
DpnII	GATC	3 cut(s)	384, 415, 456
EciI	GGCGGA	1 cut(s)	65
Eco31I	GGTCTC	1 cut(s)	134
Eco47I	GGWCC	2 cut(s)	10, 450
EcoNI	CCTNNNNNAGG	1 cut(s)	18
EcoO109I	RGGNCCY	2 cut(s)	10, 450
EcoRII	CCWGG	1 cut(s)	37
FaiI	YATR	7 cut(s)	26, 186, 202, 204, 229, 231, 361
FaqI	GGGAC	1 cut(s)	436
FauNDI	CATATG	1 cut(s)	202
FbaI	TGATCA	1 cut(s)	415
FokI	GGATG	1 cut(s)	289
GlaI	GCGC	1 cut(s)	168
GsuI	CTGGAG	1 cut(s)	173
HaeIII	GGCC	1 cut(s)	43
HapII	CCGG	2 cut(s)	44, 173
HhaI	GCGC	1 cut(s)	169
Hin6I	GCGC	1 cut(s)	167
HinP1I	GCGC	1 cut(s)	167
HinfI	GANTC	2 cut(s)	148, 239
HpaII	CCGG	2 cut(s)	44, 173
HphI	GGTGA	1 cut(s)	388
Hpy188I	TCNGA	1 cut(s)	445
Hpy188III	TCNNGA	1 cut(s)	152
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	1 cut(s)	229
HpyCH4III	ACNGT	2 cut(s)	247, 349
HpyCH4V	TGCA	3 cut(s)	20, 227, 359
HpyF10VI	GCNNNNNNNGC	8 cut(s)	26, 135, 175, 221, 224, 260, 266, 365
HpyF3I	CTNAG	1 cut(s)	255
HspAI	GCGC	1 cut(s)	167
KpnI	GGTACC	1 cut(s)	425
Ksp22I	TGATCA	1 cut(s)	415
Kzo9I	GATC	3 cut(s)	384, 415, 456
LmnI	GCTCC	1 cut(s)	65
Lsp1109I	GCAGC	8 cut(s)	4, 141, 211, 227, 247, 253, 340, 343
LweI	GCATC	2 cut(s)	154, 227
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	3 cut(s)	386, 417, 458
MboI	GATC	3 cut(s)	384, 415, 456
MboII	GAAGA	5 cut(s)	208, 218, 355, 413, 451
MflI	RGATCY	1 cut(s)	456
MluCI	AATT	1 cut(s)	209
MmeI	TCCRAC	1 cut(s)	412
MspA1I	CMGCKG	1 cut(s)	132
MspI	CCGG	2 cut(s)	44, 173
MspR9I	CCNGG	1 cut(s)	39
MvaI	CCWGG	1 cut(s)	39
MwoI	GCNNNNNNNGC	8 cut(s)	26, 135, 175, 221, 224, 260, 266, 365
NdeI	CATATG	1 cut(s)	202
NdeII	GATC	3 cut(s)	384, 415, 456
NlaIV	GGNNCC	5 cut(s)	12, 177, 411, 423, 452
NmeAIII	GCCGAG	1 cut(s)	204
NmuCI	GTSAC	1 cut(s)	376
PfeI	GAWTC	2 cut(s)	148, 239
PpuMI	RGGWCCY	2 cut(s)	10, 450
Psp5II	RGGWCCY	2 cut(s)	10, 450
Psp6I	CCWGG	1 cut(s)	37
PspGI	CCWGG	1 cut(s)	37
PspN4I	GGNNCC	5 cut(s)	12, 177, 411, 423, 452
PspPI	GGNCC	3 cut(s)	10, 41, 450
PspPPI	RGGWCCY	2 cut(s)	10, 450
PstI	CTGCAG	1 cut(s)	22
PsuI	RGATCY	1 cut(s)	456
RsaI	GTAC	1 cut(s)	423
RsaNI	GTAC	1 cut(s)	422
Sau3AI	GATC	3 cut(s)	384, 415, 456
Sau96I	GGNCC	3 cut(s)	10, 41, 450
ScrFI	CCNGG	1 cut(s)	39
SetI	ASST	8 cut(s)	25, 34, 62, 114, 311, 415, 423, 452
SfaNI	GCATC	2 cut(s)	154, 227
SfcI	CTRYAG	1 cut(s)	18
SinI	GGWCC	2 cut(s)	10, 450
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
Sse9I	AATT	1 cut(s)	209
SsiI	CCGC	5 cut(s)	50, 119, 122, 132, 263
StyD4I	CCNGG	1 cut(s)	37
TaaI	ACNGT	2 cut(s)	247, 349
TaqI	TCGA	1 cut(s)	242
TasI	AATT	1 cut(s)	209
TauI	GCSGC	3 cut(s)	122, 125, 266
TfiI	GAWTC	2 cut(s)	148, 239
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	8 cut(s)	17, 129, 215, 224, 260, 266, 353, 356
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	2 cut(s)	219, 447
TspGWI	ACGGA	1 cut(s)	58
VpaK11BI	GGWCC	2 cut(s)	10, 450
XagI	CCTNNNNNAGG	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.