Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003233

Physical Location & Seq

Genomic Coordinates Forward (+)

7626182 .. 7628290

Gene Structure 2109 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G21720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGTCGATCTTCGAGTACAATGGAAGTGCTGTTGTTGCTATGGTAGGTAAGAATTGTTTCGCCATCGCCAGTGATCGGAGACTCGGTGTTCAGCTACAGACAATCGCCACTGATTTCCAGAGAATCTCCAAGATCCACGATCGTGTCTTCATCGGTCTTTCTGGTCTCGCCACCGATGTTCAAACACTATACCAGCGCTTGGTGTTTCGTCATAAGCTTTACCAGCTTAGGGAAGAGAGAGACATGAAGCCTGAAACTTTCGCTAGTCTTGTCTCAGCCATCCTTTACGAGAAGAGATTTGGTCCTTACTTATGCCAACCTGTGATTGCTGGCTTGGGAGATGATGACAAGCCTTTCATTTGCACGATGGACTCTATCGGAGCCAAAGAGTTAGCTAAAGATTTTGTTGTATCTGGAACTGCTTCAGAATCACTCTATGGAGCTTGTGAGGCAATGTACAAGCCAGATATGGAAGCTGAGGAATTGTTCGAGACAATATCGCAAGCACTTCTCTCATCTGTTGACCGTGATTGTCTGAGTGGTTGGGGAGGGCATGTTTACATTGTAACACCAACAGAGATTAAGGAGAGGATCCTAAAGGGAAGGATGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005839 GO:0016020 GO:0019774 GO:0031090 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

204

Amino Acids

22.8

Weight (kDa)

5.31

Isoelectric Point (pI)

32.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome	PF00227	7 - 189	7.3e-47	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21720 AT1G77440 AT1G77440
fragaria_vesca	FvH4_2g27460
malus_domestica	MD00G1028400.v1.1 MD15G1344700.v1.1
prunus_persica	Prupe.1G492900_v2.0.a1
pyrus_communis	pycom08g13680 pycom15g30930
rosa_chinensis	RchiOBHm_Chr2g0103031 RchiOBHm_Chr2g0140351 RchiOBHm_Chr4g0425031 RchiOBHm_Chr5g0069521 RchiOBHm_Chr6g0296301
rosa_laevigata	RLG00000003407 RLG00000011708 RLG00000019374
rosa_multiflora	Rmu_co8088830.1_g000001 Rmu_sc0000388.1_g000016 Rmu_sc0004708.1_g000006 Rmu_sc0022551.1_g000001
rosa_roxburghii	Rroxscaffold_2G00139980 Rroxscaffold_7G00171650 Rroxscaffold_7G00178420
rosa_rugosa	Rorug02G0111500 Rorug04G0057000 Rorug05G0263600 Rorug06G0260800
rosa_samantha	Rh1BG051400 Rh2CG166500 Rh6BG194900 Rh6BG380500 Rh6DG172500 Rh7DG016200
rosa_wichuraiana	Rw2G012490 Rw4G002730 Rw6G032480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	199
AclWI	GGATC	3 cut(s)	127, 586, 599
AcuI	CTGAAG	1 cut(s)	408
AfaI	GTAC	2 cut(s)	17, 458
AfeI	AGCGCT	1 cut(s)	197
AfiI	CCNNNNNNNGG	3 cut(s)	75, 199, 229
AgsI	TTSAA	1 cut(s)	182
AleI	CACNNNNGTG	1 cut(s)	141
AluBI	AGCT	6 cut(s)	94, 217, 226, 395, 443, 476
AluI	AGCT	6 cut(s)	94, 217, 226, 395, 443, 476
Alw26I	GTCTC	5 cut(s)	73, 170, 234, 277, 485
AlwI	GGATC	3 cut(s)	127, 586, 599
Aor51HI	AGCGCT	1 cut(s)	197
Asp700I	GAANNNNTTC	2 cut(s)	56, 421
AspLEI	GCGC	1 cut(s)	198
AspS9I	GGNCC	1 cut(s)	302
AvaII	GGWCC	1 cut(s)	302
BamHI	GGATCC	1 cut(s)	591
BbsI	GAAGAC	1 cut(s)	139
BbvCI	CCTCAGC	1 cut(s)	477
BccI	CCATC	4 cut(s)	71, 287, 361, 601
BcoDI	GTCTC	5 cut(s)	73, 170, 234, 277, 485
BfaI	CTAG	1 cut(s)	264
BfmI	CTRYAG	1 cut(s)	95
BfoI	RGCGCY	1 cut(s)	199
Bme18I	GGWCC	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	302
BmiI	GGNNCC	2 cut(s)	382, 593
BpiI	GAAGAC	1 cut(s)	139
Bpu10I	CCTNAGC	2 cut(s)	227, 477
BsaI	GGTCTC	1 cut(s)	170
BsaXI	ACNNNNNCTCC	4 cut(s)	70, 100, 540, 570
Bsc4I	CCNNNNNNNGG	3 cut(s)	75, 199, 229
Bse1I	ACTGG	1 cut(s)	69
Bse3DI	GCAATG	1 cut(s)	459
BseGI	GGATG	2 cut(s)	279, 612
BseLI	CCNNNNNNNGG	3 cut(s)	75, 199, 229
BseMI	GCAATG	1 cut(s)	459
BseMII	CTCAG	3 cut(s)	288, 468, 527
BseNI	ACTGG	1 cut(s)	69
Bsh1285I	CGRYCG	1 cut(s)	142
BsiEI	CGRYCG	1 cut(s)	142
BslI	CCNNNNNNNGG	3 cut(s)	75, 199, 229
BsmAI	GTCTC	5 cut(s)	73, 170, 234, 277, 485
Bso31I	GGTCTC	1 cut(s)	170
Bsp1407I	TGTACA	1 cut(s)	456
Bsp143I	GATC	5 cut(s)	6, 73, 132, 139, 591
BspCNI	CTCAG	3 cut(s)	287, 469, 528
BspLI	GGNNCC	2 cut(s)	382, 593
BspPI	GGATC	3 cut(s)	127, 586, 599
BspTNI	GGTCTC	1 cut(s)	170
BsrDI	GCAATG	1 cut(s)	459
BsrGI	TGTACA	1 cut(s)	456
BsrI	ACTGG	1 cut(s)	69
BssMI	GATC	5 cut(s)	6, 73, 132, 139, 591
Bst4CI	ACNGT	1 cut(s)	527
Bst6I	CTCTTC	2 cut(s)	228, 287
BstAUI	TGTACA	1 cut(s)	456
BstC8I	GCNNGC	2 cut(s)	331, 504
BstDEI	CTNAG	4 cut(s)	227, 274, 477, 536
BstF5I	GGATG	2 cut(s)	279, 612
BstH2I	RGCGCY	1 cut(s)	199
BstHHI	GCGC	1 cut(s)	198
BstKTI	GATC	5 cut(s)	9, 76, 135, 142, 594
BstMAI	GTCTC	5 cut(s)	73, 170, 234, 277, 485
BstMBI	GATC	5 cut(s)	6, 73, 132, 139, 591
BstMCI	CGRYCG	1 cut(s)	142
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 223, 449
BstNSI	RCATGY	1 cut(s)	557
BstSFI	CTRYAG	1 cut(s)	95
BstV2I	GAAGAC	1 cut(s)	139
BstX2I	RGATCY	2 cut(s)	132, 591
BstYI	RGATCY	2 cut(s)	132, 591
BtgZI	GCGATG	1 cut(s)	49
BtsCI	GGATG	2 cut(s)	279, 612
BtsIMutI	CAGTG	2 cut(s)	76, 108
Cac8I	GCNNGC	2 cut(s)	331, 504
CfoI	GCGC	1 cut(s)	198
Cfr13I	GGNCC	1 cut(s)	302
Csp6I	GTAC	2 cut(s)	16, 457
CviAII	CATG	2 cut(s)	244, 554
CviQI	GTAC	2 cut(s)	16, 457
DdeI	CTNAG	4 cut(s)	227, 274, 477, 536
DpnI	GATC	5 cut(s)	8, 75, 134, 141, 593
DpnII	GATC	5 cut(s)	6, 73, 132, 139, 591
Eam1104I	CTCTTC	2 cut(s)	228, 287
EarI	CTCTTC	2 cut(s)	228, 287
Eco31I	GGTCTC	1 cut(s)	170
Eco47I	GGWCC	1 cut(s)	302
Eco47III	AGCGCT	1 cut(s)	197
Eco57I	CTGAAG	1 cut(s)	408
FaeI	CATG	2 cut(s)	247, 557
FaiI	YATR	8 cut(s)	41, 190, 213, 245, 313, 438, 470, 555
FatI	CATG	2 cut(s)	243, 553
FokI	GGATG	1 cut(s)	266
FspBI	CTAG	1 cut(s)	264
GlaI	GCGC	1 cut(s)	197
HaeII	RGCGCY	1 cut(s)	199
HhaI	GCGC	1 cut(s)	198
Hin1II	CATG	2 cut(s)	247, 557
Hin6I	GCGC	1 cut(s)	196
HinP1I	GCGC	1 cut(s)	196
HincII	GTYRAC	1 cut(s)	523
HindII	GTYRAC	1 cut(s)	523
HindIII	AAGCTT	1 cut(s)	215
HinfI	GANTC	4 cut(s)	81, 123, 371, 428
Hpy166II	GTNNAC	2 cut(s)	523, 559
Hpy188I	TCNGA	4 cut(s)	78, 380, 427, 537
Hpy188III	TCNNGA	3 cut(s)	118, 414, 490
Hpy8I	GTNNAC	2 cut(s)	523, 559
HpyAV	CCTTC	1 cut(s)	597
HpyCH4III	ACNGT	1 cut(s)	527
HpyCH4V	TGCA	1 cut(s)	363
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 223, 449
HpyF3I	CTNAG	4 cut(s)	227, 274, 477, 536
Hsp92II	CATG	2 cut(s)	247, 557
HspAI	GCGC	1 cut(s)	196
Kzo9I	GATC	5 cut(s)	6, 73, 132, 139, 591
LmnI	GCTCC	2 cut(s)	380, 440
MaeI	CTAG	1 cut(s)	264
MaeIII	GTNAC	1 cut(s)	565
MalI	GATC	5 cut(s)	8, 75, 134, 141, 593
MboI	GATC	5 cut(s)	6, 73, 132, 139, 591
MboII	GAAGA	3 cut(s)	139, 245, 304
MflI	RGATCY	2 cut(s)	132, 591
MluCI	AATT	2 cut(s)	52, 482
MlyI	GAGTC	2 cut(s)	75, 365
MnlI	CCTC	4 cut(s)	442, 472, 542, 582
MroXI	GAANNNNTTC	2 cut(s)	56, 421
MseI	TTAA	1 cut(s)	582
MslI	CAYNNNNRTG	1 cut(s)	141
MwoI	GCNNNNNNNGC	3 cut(s)	35, 223, 449
NdeII	GATC	5 cut(s)	6, 73, 132, 139, 591
NlaIII	CATG	2 cut(s)	247, 557
NlaIV	GGNNCC	2 cut(s)	382, 593
NspI	RCATGY	1 cut(s)	557
OliI	CACNNNNGTG	1 cut(s)	141
PdmI	GAANNNNTTC	2 cut(s)	56, 421
PfeI	GAWTC	2 cut(s)	123, 428
PflMI	CCANNNNNTGG	1 cut(s)	199
Ple19I	CGATCG	1 cut(s)	142
PleI	GAGTC	2 cut(s)	75, 365
PpsI	GAGTC	2 cut(s)	75, 365
PspN4I	GGNNCC	2 cut(s)	382, 593
PspPI	GGNCC	1 cut(s)	302
PsuI	RGATCY	2 cut(s)	132, 591
PvuI	CGATCG	1 cut(s)	142
RsaI	GTAC	2 cut(s)	17, 458
RsaNI	GTAC	2 cut(s)	16, 457
RseI	CAYNNNNRTG	1 cut(s)	141
SaqAI	TTAA	1 cut(s)	582
Sau3AI	GATC	5 cut(s)	6, 73, 132, 139, 591
Sau96I	GGNCC	1 cut(s)	302
SchI	GAGTC	2 cut(s)	75, 365
SetI	ASST	8 cut(s)	49, 96, 219, 228, 322, 397, 445, 478
SfcI	CTRYAG	1 cut(s)	95
SinI	GGWCC	1 cut(s)	302
SmiMI	CAYNNNNRTG	1 cut(s)	141
Sse9I	AATT	2 cut(s)	52, 482
SspMI	CTAG	1 cut(s)	264
TaaI	ACNGT	1 cut(s)	527
TaqI	TCGA	3 cut(s)	5, 12, 489
TaqII	GACCGA	1 cut(s)	143
TasI	AATT	2 cut(s)	52, 482
TatI	WGTACW	2 cut(s)	15, 456
TfiI	GAWTC	2 cut(s)	123, 428
Tru1I	TTAA	1 cut(s)	582
Tru9I	TTAA	1 cut(s)	582
TscAI	CASTG	2 cut(s)	76, 115
TspDTI	ATGAA	3 cut(s)	139, 260, 346
TspRI	CASTG	2 cut(s)	76, 115
Van91I	CCANNNNNTGG	1 cut(s)	199
VpaK11BI	GGWCC	1 cut(s)	302
XceI	RCATGY	1 cut(s)	557
XmnI	GAANNNNTTC	2 cut(s)	56, 421
XspI	CTAG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.