Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0003233

Physical Location & Seq

Genomic Coordinates Reverse (-)

5351909 .. 5352614

Gene Structure 706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G002730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGTCGGCGATGGAGATCAATAGTTCAATTCCTTTGTGCAGAAAACCAAATGGACGTCGCGTTTCGCCACTGATACCAAGGATTCCCATACTGTGGGATTCCAAGATTCCATTGGCTGTTACAATGCTGCTGTTCAGGAACTGGTGGAGGTTTCAGAGGCTTATGTTTAAGCATAAGTTGTACCAGCTAAGGGAAAAGAGGGATATGAAGCCTGAGACTTTTGCTAGCCTCGTCTCAGCCATTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005839 GO:0016020 GO:0019774 GO:0031090 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

82

Amino Acids

9.78

Weight (kDa)

11.26

Isoelectric Point (pI)

42.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21720 AT1G77440 AT1G77440
fragaria_vesca	FvH4_2g27460
malus_domestica	MD00G1028400.v1.1 MD15G1344700.v1.1
prunus_persica	Prupe.1G492900_v2.0.a1
pyrus_communis	pycom08g13680 pycom15g30930
rosa_chinensis	RchiOBHm_Chr2g0103031 RchiOBHm_Chr2g0140351 RchiOBHm_Chr4g0425031 RchiOBHm_Chr5g0069521 RchiOBHm_Chr6g0296301
rosa_laevigata	RLG00000003407 RLG00000011708 RLG00000019374
rosa_multiflora	Rmu_co8088830.1_g000001 Rmu_sc0000388.1_g000016 Rmu_sc0004708.1_g000006 Rmu_sc0022551.1_g000001
rosa_roxburghii	Rroxscaffold_2G00139980 Rroxscaffold_7G00171650 Rroxscaffold_7G00178420
rosa_rugosa	Rorug02G0111500 Rorug04G0057000 Rorug05G0263600 Rorug06G0260800
rosa_samantha	Rh1BG051400 Rh2CG166500 Rh6BG194900 Rh6BG380500 Rh6DG172500 Rh7DG016200
rosa_wichuraiana	Rw2G012490 Rw4G002730 Rw6G032480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	58
AccB7I	CCANNNNNTGG	1 cut(s)	93
AccII	CGCG	1 cut(s)	60
AcyI	GRCGYC	1 cut(s)	55
AfaI	GTAC	1 cut(s)	182
AfiI	CCNNNNNNNGG	2 cut(s)	93, 190
AgsI	TTSAA	1 cut(s)	27
AluBI	AGCT	1 cut(s)	187
AluI	AGCT	1 cut(s)	187
Alw26I	GTCTC	2 cut(s)	209, 238
AlwNI	CAGNNNCTG	1 cut(s)	141
ApeKI	GCWGC	1 cut(s)	127
AsuNHI	GCTAGC	1 cut(s)	224
BbvI	GCAGC	1 cut(s)	114
BccI	CCATC	1 cut(s)	4
BcoDI	GTCTC	2 cut(s)	209, 238
BfaI	CTAG	2 cut(s)	225, 247
BisI	GCNGC	1 cut(s)	128
BlsI	GCNGC	1 cut(s)	129
BmtI	GCTAGC	1 cut(s)	228
Bpu10I	CCTNAGC	1 cut(s)	188
BsaBI	GATNNNNATC	1 cut(s)	14
BsaHI	GRCGYC	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 190
Bse1I	ACTGG	1 cut(s)	146
Bse8I	GATNNNNATC	1 cut(s)	14
BseDI	CCNNGG	1 cut(s)	77
BseJI	GATNNNNATC	1 cut(s)	14
BseLI	CCNNNNNNNGG	2 cut(s)	93, 190
BseMII	CTCAG	2 cut(s)	204, 249
BseNI	ACTGG	1 cut(s)	146
BseXI	GCAGC	1 cut(s)	114
BsgI	GTGCAG	1 cut(s)	58
Bsh1236I	CGCG	1 cut(s)	60
BslI	CCNNNNNNNGG	2 cut(s)	93, 190
BsmAI	GTCTC	2 cut(s)	209, 238
BsmBI	CGTCTC	1 cut(s)	238
Bsp143I	GATC	1 cut(s)	15
BspCNI	CTCAG	2 cut(s)	205, 248
BspFNI	CGCG	1 cut(s)	60
BspOI	GCTAGC	1 cut(s)	228
BsrI	ACTGG	1 cut(s)	146
BssECI	CCNNGG	1 cut(s)	77
BssMI	GATC	1 cut(s)	15
BssNI	GRCGYC	1 cut(s)	55
BssT1I	CCWWGG	1 cut(s)	77
Bst4CI	ACNGT	1 cut(s)	93
BstACI	GRCGYC	1 cut(s)	55
BstC8I	GCNNGC	1 cut(s)	226
BstDEI	CTNAG	3 cut(s)	188, 213, 235
BstFNI	CGCG	1 cut(s)	60
BstKTI	GATC	1 cut(s)	18
BstMAI	GTCTC	2 cut(s)	209, 238
BstMBI	GATC	1 cut(s)	15
BstUI	CGCG	1 cut(s)	60
BstV1I	GCAGC	1 cut(s)	114
BtgZI	GCGATG	1 cut(s)	23
BtsIMutI	CAGTG	1 cut(s)	68
Cac8I	GCNNGC	1 cut(s)	226
CaiI	CAGNNNCTG	1 cut(s)	141
Csp6I	GTAC	1 cut(s)	181
CviJI	RGCY	6 cut(s)	116, 160, 187, 211, 228, 239
CviKI_1	RGCY	6 cut(s)	116, 160, 187, 211, 228, 239
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	3 cut(s)	188, 213, 235
DpnI	GATC	1 cut(s)	17
DpnII	GATC	1 cut(s)	15
Eco130I	CCWWGG	1 cut(s)	77
EcoT14I	CCWWGG	1 cut(s)	77
ErhI	CCWWGG	1 cut(s)	77
Esp3I	CGTCTC	1 cut(s)	238
FaiI	YATR	4 cut(s)	89, 164, 174, 206
Fnu4HI	GCNGC	1 cut(s)	128
Fsp4HI	GCNGC	1 cut(s)	128
FspBI	CTAG	2 cut(s)	225, 247
GluI	GCNGC	1 cut(s)	128
Hin1I	GRCGYC	1 cut(s)	55
HinfI	GANTC	3 cut(s)	82, 98, 106
Hpy188I	TCNGA	1 cut(s)	156
Hpy188III	TCNNGA	1 cut(s)	136
Hpy99I	CGWCG	1 cut(s)	60
HpyCH4III	ACNGT	1 cut(s)	93
HpyCH4IV	ACGT	1 cut(s)	55
HpyCH4V	TGCA	1 cut(s)	39
HpyF3I	CTNAG	3 cut(s)	188, 213, 235
HpySE526I	ACGT	1 cut(s)	55
Hsp92I	GRCGYC	1 cut(s)	55
Kzo9I	GATC	1 cut(s)	15
LpnPI	CCDG	4 cut(s)	121, 127, 197, 225
Lsp1109I	GCAGC	1 cut(s)	114
MaeI	CTAG	2 cut(s)	225, 247
MaeII	ACGT	1 cut(s)	55
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	1 cut(s)	17
MboI	GATC	1 cut(s)	15
MluCI	AATT	1 cut(s)	27
MnlI	CCTC	4 cut(s)	141, 150, 192, 239
MseI	TTAA	1 cut(s)	168
MvnI	CGCG	1 cut(s)	60
NdeII	GATC	1 cut(s)	15
NheI	GCTAGC	1 cut(s)	224
PfeI	GAWTC	3 cut(s)	82, 98, 106
PflMI	CCANNNNNTGG	1 cut(s)	93
PkrI	GCNGC	1 cut(s)	129
PstNI	CAGNNNCTG	1 cut(s)	141
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	1 cut(s)	128
Sau3AI	GATC	1 cut(s)	15
SetI	ASST	3 cut(s)	58, 152, 189
SgeI	CNNG	9 cut(s)	71, 90, 115, 148, 154, 196, 224, 237, 242
Sse9I	AATT	1 cut(s)	27
SspMI	CTAG	2 cut(s)	225, 247
StyI	CCWWGG	1 cut(s)	77
TaaI	ACNGT	1 cut(s)	93
TaiI	ACGT	1 cut(s)	58
TasI	AATT	1 cut(s)	27
TfiI	GAWTC	3 cut(s)	82, 98, 106
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TscAI	CASTG	1 cut(s)	75
TseI	GCWGC	1 cut(s)	127
TspDTI	ATGAA	1 cut(s)	221
TspRI	CASTG	1 cut(s)	75
Van91I	CCANNNNNTGG	1 cut(s)	93
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
XspI	CTAG	2 cut(s)	225, 247
ZraI	GACGTC	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.