Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0003233

Physical Location & Seq

Genomic Coordinates Forward (+)

12542941 .. 12545373

Gene Structure 2433 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g13680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGTCGATCACCGAGTACAATGGGAGTGCACTGGTCGCAATGGTGGGGAAGAACTGCTTCGCCAACGCGAGCGATCGCCGCCTCGGCGTTCAGCTCCAGACCGTCGCCACCGACTTCAAGAGGATTAGCCAAGTCCACGATAGGCTCTTCATTGGCCTCTCCGGCCTTGCCACCGACGCTCAGACTCTGTATCAGAGGCTCATGTTTCGGCACAAGCTGTACCAGCTTCGGGAAGAGAGGGATATGAAGCCGGAGACTTTTGCCAGCCTTGTTTCCGCTATTCTGTATGAGAAAAGGTTTGGTCCCTACTTCACTCAGCCTGTAATTGCTGGGTTAAGTGATGAAGACAGACCATTCATATGCACTATGGATTCAATTGGAGCCAAGGAACTGGCTAAAGACTTCGTTGTTGCTGGTACTGCATCGGAGTCCCTTTATGGTGCTTGTGAGGCAATGTTCAAGCCTGATATGGAACCAGAGGAATTGTTTGAGACTGTCTCTCAAGCATTACTTTCATCAGTAGATCGAGACTGTCTGAGTGGTTGGGGAGGCCACGTCTTTGTCGTAACACCAACTGAAGTGCAGGAGAAGATCTTGAAGGGAAGAATGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005839 GO:0016020 GO:0019774 GO:0031090 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

205

Amino Acids

22.77

Weight (kDa)

5.18

Isoelectric Point (pI)

37.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome	PF00227	7 - 189	1.2e-43	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21720 AT1G77440 AT1G77440
fragaria_vesca	FvH4_2g27460
malus_domestica	MD00G1028400.v1.1 MD15G1344700.v1.1
prunus_persica	Prupe.1G492900_v2.0.a1
pyrus_communis	pycom08g13680 pycom15g30930
rosa_chinensis	RchiOBHm_Chr2g0103031 RchiOBHm_Chr2g0140351 RchiOBHm_Chr4g0425031 RchiOBHm_Chr5g0069521 RchiOBHm_Chr6g0296301
rosa_laevigata	RLG00000003407 RLG00000011708 RLG00000019374
rosa_multiflora	Rmu_co8088830.1_g000001 Rmu_sc0000388.1_g000016 Rmu_sc0004708.1_g000006 Rmu_sc0022551.1_g000001
rosa_roxburghii	Rroxscaffold_2G00139980 Rroxscaffold_7G00171650 Rroxscaffold_7G00178420
rosa_rugosa	Rorug02G0111500 Rorug04G0057000 Rorug05G0263600 Rorug06G0260800
rosa_samantha	Rh1BG051400 Rh2CG166500 Rh6BG194900 Rh6BG380500 Rh6DG172500 Rh7DG016200
rosa_wichuraiana	Rw2G012490 Rw4G002730 Rw6G032480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	68
AciI	CCGC	2 cut(s)	79, 276
AcuI	CTGAAG	1 cut(s)	597
AfaI	GTAC	3 cut(s)	17, 221, 418
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	4 cut(s)	118, 375, 460, 598
AjiI	CACGTC	1 cut(s)	556
AluBI	AGCT	3 cut(s)	94, 217, 226
AluI	AGCT	3 cut(s)	94, 217, 226
Alw21I	GWGCWC	1 cut(s)	31
Alw26I	GTCTC	4 cut(s)	248, 485, 502, 522
Alw44I	GTGCAC	1 cut(s)	27
AlwNI	CAGNNNCTG	1 cut(s)	187
AoxI	GGCC	3 cut(s)	154, 163, 550
ApaLI	GTGCAC	1 cut(s)	27
AsiSI	GCGATCGC	1 cut(s)	76
Asp700I	GAANNNNTTC	1 cut(s)	56
AspS9I	GGNCC	1 cut(s)	302
AvaII	GGWCC	1 cut(s)	302
BaeGI	GKGCMC	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	351
Bbv12I	GWGCWC	1 cut(s)	31
BcoDI	GTCTC	4 cut(s)	248, 485, 502, 522
BglI	GCCNNNNNGGC	2 cut(s)	84, 162
BglII	AGATCT	1 cut(s)	591
BisI	GCNGC	1 cut(s)	79
BlsI	GCNGC	1 cut(s)	80
Bme18I	GGWCC	1 cut(s)	302
BmgBI	CACGTC	1 cut(s)	556
BmgT120I	GGNCC	1 cut(s)	302
BmiI	GGNNCC	3 cut(s)	304, 382, 474
BmsI	GCATC	1 cut(s)	431
BpiI	GAAGAC	1 cut(s)	351
BplI	GAGNNNNNCTC	2 cut(s)	482, 514
BpmI	CTGGAG	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	486
BsaJI	CCNNGG	2 cut(s)	82, 384
BsaXI	ACNNNNNCTCC	2 cut(s)	540, 570
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse1I	ACTGG	2 cut(s)	36, 396
Bse3DI	GCAATG	2 cut(s)	45, 459
BseDI	CCNNGG	2 cut(s)	82, 384
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMI	GCAATG	2 cut(s)	45, 459
BseMII	CTCAG	3 cut(s)	194, 329, 527
BseNI	ACTGG	2 cut(s)	36, 396
BseSI	GKGCMC	1 cut(s)	31
BseYI	CCCAGC	1 cut(s)	329
BsgI	GTGCAG	1 cut(s)	602
Bsh1236I	CGCG	1 cut(s)	68
Bsh1285I	CGRYCG	1 cut(s)	76
BshFI	GGCC	3 cut(s)	156, 165, 552
BsiEI	CGRYCG	1 cut(s)	76
BsiHKAI	GWGCWC	1 cut(s)	31
BsiSI	CCGG	2 cut(s)	162, 251
BslFI	GGGAC	2 cut(s)	288, 415
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	4 cut(s)	248, 485, 502, 522
BsmFI	GGGAC	2 cut(s)	288, 415
BsnI	GGCC	3 cut(s)	156, 165, 552
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	4 cut(s)	6, 73, 523, 591
BspACI	CCGC	2 cut(s)	79, 276
BspANI	GGCC	3 cut(s)	156, 165, 552
BspCNI	CTCAG	3 cut(s)	193, 328, 528
BspFNI	CGCG	1 cut(s)	68
BspLI	GGNNCC	3 cut(s)	304, 382, 474
BspQI	GCTCTTC	1 cut(s)	152
BsrDI	GCAATG	2 cut(s)	45, 459
BsrI	ACTGG	2 cut(s)	36, 396
BssECI	CCNNGG	2 cut(s)	82, 384
BssMI	GATC	4 cut(s)	6, 73, 523, 591
BssT1I	CCWWGG	1 cut(s)	384
Bst4CI	ACNGT	3 cut(s)	103, 496, 533
Bst6I	CTCTTC	2 cut(s)	152, 228
BstC8I	GCNNGC	2 cut(s)	70, 265
BstDEI	CTNAG	3 cut(s)	180, 315, 536
BstFNI	CGCG	1 cut(s)	68
BstKTI	GATC	4 cut(s)	9, 76, 526, 594
BstMAI	GTCTC	4 cut(s)	248, 485, 502, 522
BstMBI	GATC	4 cut(s)	6, 73, 523, 591
BstMCI	CGRYCG	1 cut(s)	76
BstMWI	GCNNNNNNNGC	8 cut(s)	35, 78, 84, 162, 176, 223, 419, 449
BstSLI	GKGCMC	1 cut(s)	31
BstUI	CGCG	1 cut(s)	68
BstV2I	GAAGAC	1 cut(s)	351
BstX2I	RGATCY	1 cut(s)	591
BstXI	CCANNNNNNTGG	1 cut(s)	391
BstYI	RGATCY	1 cut(s)	591
BsuRI	GGCC	3 cut(s)	156, 165, 552
BtrI	CACGTC	1 cut(s)	556
BtsIMutI	CAGTG	1 cut(s)	29
Cac8I	GCNNGC	2 cut(s)	70, 265
CaiI	CAGNNNCTG	1 cut(s)	187
Cfr13I	GGNCC	1 cut(s)	302
CseI	GACGC	1 cut(s)	185
Csp6I	GTAC	3 cut(s)	16, 220, 417
CviAII	CATG	1 cut(s)	202
CviQI	GTAC	3 cut(s)	16, 220, 417
DdeI	CTNAG	3 cut(s)	180, 315, 536
DpnI	GATC	4 cut(s)	8, 75, 525, 593
DpnII	GATC	4 cut(s)	6, 73, 523, 591
Eam1104I	CTCTTC	2 cut(s)	152, 228
EarI	CTCTTC	2 cut(s)	152, 228
Eco130I	CCWWGG	1 cut(s)	384
Eco47I	GGWCC	1 cut(s)	302
Eco57I	CTGAAG	1 cut(s)	597
EcoT14I	CCWWGG	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	384
FaeI	CATG	1 cut(s)	205
FaiI	YATR	8 cut(s)	203, 245, 288, 359, 361, 368, 438, 470
FalI	AAGNNNNNCTT	4 cut(s)	41, 73, 495, 527
FaqI	GGGAC	2 cut(s)	288, 415
FatI	CATG	1 cut(s)	201
FauNDI	CATATG	1 cut(s)	359
Fnu4HI	GCNGC	1 cut(s)	79
Fsp4HI	GCNGC	1 cut(s)	79
GluI	GCNGC	1 cut(s)	79
GsaI	CCCAGC	1 cut(s)	333
GsuI	CTGGAG	1 cut(s)	80
HaeIII	GGCC	3 cut(s)	156, 165, 552
HapII	CCGG	2 cut(s)	162, 251
HgaI	GACGC	1 cut(s)	185
Hin1II	CATG	1 cut(s)	205
HinfI	GANTC	3 cut(s)	184, 371, 428
HpaII	CCGG	2 cut(s)	162, 251
Hpy166II	GTNNAC	2 cut(s)	29, 136
Hpy188I	TCNGA	4 cut(s)	183, 195, 427, 537
Hpy188III	TCNNGA	5 cut(s)	97, 118, 230, 527, 595
Hpy8I	GTNNAC	2 cut(s)	29, 136
Hpy99I	CGWCG	2 cut(s)	107, 179
HpyAV	CCTTC	1 cut(s)	592
HpyCH4III	ACNGT	3 cut(s)	103, 496, 533
HpyCH4IV	ACGT	1 cut(s)	555
HpyCH4V	TGCA	4 cut(s)	29, 363, 422, 583
HpyF10VI	GCNNNNNNNGC	8 cut(s)	35, 78, 84, 162, 176, 223, 419, 449
HpyF3I	CTNAG	3 cut(s)	180, 315, 536
HpySE526I	ACGT	1 cut(s)	555
Hsp92II	CATG	1 cut(s)	205
Kzo9I	GATC	4 cut(s)	6, 73, 523, 591
LguI	GCTCTTC	1 cut(s)	152
LmnI	GCTCC	2 cut(s)	99, 380
LweI	GCATC	1 cut(s)	431
MaeII	ACGT	1 cut(s)	555
MaeIII	GTNAC	1 cut(s)	565
MalI	GATC	4 cut(s)	8, 75, 525, 593
MboI	GATC	4 cut(s)	6, 73, 523, 591
MboII	GAAGA	6 cut(s)	61, 139, 245, 356, 601, 615
MfeI	CAATTG	1 cut(s)	375
MflI	RGATCY	1 cut(s)	591
MhlI	GDGCHC	1 cut(s)	31
MluCI	AATT	3 cut(s)	324, 375, 482
MlyI	GAGTC	2 cut(s)	178, 437
MnlI	CCTC	8 cut(s)	92, 114, 167, 189, 231, 442, 472, 542
MroXI	GAANNNNTTC	1 cut(s)	56
MseI	TTAA	1 cut(s)	335
MslI	CAYNNNNRTG	1 cut(s)	358
MspI	CCGG	2 cut(s)	162, 251
MunI	CAATTG	1 cut(s)	375
MvnI	CGCG	1 cut(s)	68
MwoI	GCNNNNNNNGC	8 cut(s)	35, 78, 84, 162, 176, 223, 419, 449
NdeI	CATATG	1 cut(s)	359
NdeII	GATC	4 cut(s)	6, 73, 523, 591
NlaIII	CATG	1 cut(s)	205
NlaIV	GGNNCC	3 cut(s)	304, 382, 474
NmeAIII	GCCGAG	1 cut(s)	63
PciSI	GCTCTTC	1 cut(s)	152
PcsI	WCGNNNNNNNCGW	1 cut(s)	561
PdmI	GAANNNNTTC	1 cut(s)	56
PfeI	GAWTC	1 cut(s)	371
PkrI	GCNGC	1 cut(s)	80
Ple19I	CGATCG	1 cut(s)	76
PleI	GAGTC	2 cut(s)	178, 436
PpsI	GAGTC	2 cut(s)	178, 436
PspFI	CCCAGC	1 cut(s)	329
PspN4I	GGNNCC	3 cut(s)	304, 382, 474
PspPI	GGNCC	1 cut(s)	302
PstNI	CAGNNNCTG	1 cut(s)	187
PsuI	RGATCY	1 cut(s)	591
PvuI	CGATCG	1 cut(s)	76
RgaI	GCGATCGC	1 cut(s)	76
RsaI	GTAC	3 cut(s)	17, 221, 418
RsaNI	GTAC	3 cut(s)	16, 220, 417
RseI	CAYNNNNRTG	1 cut(s)	358
SapI	GCTCTTC	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	335
SatI	GCNGC	1 cut(s)	79
Sau3AI	GATC	4 cut(s)	6, 73, 523, 591
Sau96I	GGNCC	1 cut(s)	302
SchI	GAGTC	2 cut(s)	178, 437
SduI	GDGCHC	1 cut(s)	31
SetI	ASST	5 cut(s)	96, 219, 228, 299, 558
SfaAI	GCGATCGC	1 cut(s)	76
SfaNI	GCATC	1 cut(s)	431
SfiI	GGCCNNNNNGGCC	1 cut(s)	162
SgfI	GCGATCGC	1 cut(s)	76
SinI	GGWCC	1 cut(s)	302
SmiMI	CAYNNNNRTG	1 cut(s)	358
SmlI	CTYRAG	1 cut(s)	501
SmoI	CTYRAG	1 cut(s)	501
Sse9I	AATT	3 cut(s)	324, 375, 482
SsiI	CCGC	2 cut(s)	79, 276
StyI	CCWWGG	1 cut(s)	384
TaaI	ACNGT	3 cut(s)	103, 496, 533
TaiI	ACGT	1 cut(s)	558
TaqI	TCGA	2 cut(s)	5, 526
TasI	AATT	3 cut(s)	324, 375, 482
TatI	WGTACW	1 cut(s)	15
TauI	GCSGC	1 cut(s)	81
TfiI	GAWTC	1 cut(s)	371
Tru1I	TTAA	1 cut(s)	335
Tru9I	TTAA	1 cut(s)	335
TscAI	CASTG	1 cut(s)	36
TspDTI	ATGAA	5 cut(s)	139, 260, 346, 357, 504
TspRI	CASTG	1 cut(s)	36
VneI	GTGCAC	1 cut(s)	27
VpaK11BI	GGWCC	1 cut(s)	302
XmnI	GAANNNNTTC	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.