Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003233

Physical Location & Seq

Genomic Coordinates Forward (+)

29914503 .. 29915742

Gene Structure 1240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0263600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGGCTCAATTGGAAGAGAACAATCAGGTCAGTCTTCATCTGGAGAACTCAGCACGTGTTTCTTTGGGGTCAGCGGGGCTTGCAGCGTTGCTAGCCGATCGTTGGTACATGGTGGGTCGACTTCTTTGCCCTAAAACCAAATTCCCAGGATTCACAGGTACAATTTCTACGATTTGGTGTATGAAATCGGGGCTATTGATTCAGGACATGGGAGATCGTTTTGTGTTTCAGTTTGATCGAGAGGTTGAACGTAACAAAGTCTTGCATGGAGGGCCTTGGTTTATAAGGAATACAATGCTTGTGTTGGGTGGGTACGATGGGATAAGTCTGGTGGCTGCAATCCCCCTGAATCTGGTGGAAACTTGGATCGGAGTCAAGGGCCTTCCGGTAGGGTTACGAAACAAGGCGGCTCTAAACTTGGTGGGATCGACCCTGGGGAGGGTGATCCGATTTGATCAAACGGCGCTGCATCAGAGAGAGGAAGAACAGATGATTTGTTTGGTGCTTGATGTCCAGTGCAGCATTAGGGTGTGGAAACTTTTTGAATTTTCACCGGCTGTAGCGCCGGAGTTGTCTTTTACCTATGAAAAAGTCAGAGGCTTTTGTTGTAGTTGTGGTTTCTTTGAGCATGGAGAGACAGGGTGTGACGGATTGTTGATAAAAGATAAGGATGAAATCTTGGCTCAAATGCAAGCCTCTGTTTTGGCTAGGCTATCTTTGACAGAGAATTTGTCAAACCCTAGGTCTGAGGGGGAAGGGAACCAGGTTTCTGAGGGTGTGCTTACACTGGTGAATACGGGATCGTGTAATTTGAATTTGTCTGCTTTCCTGGAGAATTGGACATCCCAAGTTCATAAAACTATGGGATCGGTGAAAATGGGACGTAGACTACCTCTGGCTATTGTTCCGAACCCGGAACTGGAAGGTGGTAGAATTACATTGGAGGTGGAATCATCTTCGAGACAAGACTTGGTGATTGGGTCCAAGCGAAAGACTGTGGAGGCTTTGGATCAAGTAGGTAAGAGGCATGGCTCTATCTCGGAACCTTTACTTCAGTTTGATGATGGTATGCAGCTTATTTTGCAACATAAGAATGAGCAGCTGATTGTCTCACCAAGAAAGAAGAAATTGGGAAGGTCGAAGGGAAGTAAGAATAGGCCTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000278 GO:0000280 GO:0000923 GO:0000930 GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0007051 GO:0007052 GO:0007098 GO:0008092 GO:0008150 GO:0008275 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0031023 GO:0031109 GO:0031122 GO:0031974 GO:0031981 GO:0032153 GO:0032155 GO:0032991 GO:0034622 GO:0043015 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0046785 GO:0048285 GO:0051225 GO:0051258 GO:0051298 GO:0051321 GO:0051415 GO:0051418 GO:0065003 GO:0070013 GO:0070925 GO:0071840 GO:0090307 GO:0097435 GO:0140014 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spc97_Spc98

Protein Analysis

388

Amino Acids

42.94

Weight (kDa)

8.68

Isoelectric Point (pI)

38.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	34 - 102	1.2e-09	Domain of unknown function (DUF4283)
zf-CCHC_4	PF14392	170 - 216	6.4e-06	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21720 AT1G77440 AT1G77440
fragaria_vesca	FvH4_2g27460
malus_domestica	MD00G1028400.v1.1 MD15G1344700.v1.1
prunus_persica	Prupe.1G492900_v2.0.a1
pyrus_communis	pycom08g13680 pycom15g30930
rosa_chinensis	RchiOBHm_Chr2g0103031 RchiOBHm_Chr2g0140351 RchiOBHm_Chr4g0425031 RchiOBHm_Chr5g0069521 RchiOBHm_Chr6g0296301
rosa_laevigata	RLG00000003407 RLG00000011708 RLG00000019374
rosa_multiflora	Rmu_co8088830.1_g000001 Rmu_sc0000388.1_g000016 Rmu_sc0004708.1_g000006 Rmu_sc0022551.1_g000001
rosa_roxburghii	Rroxscaffold_2G00139980 Rroxscaffold_7G00171650 Rroxscaffold_7G00178420
rosa_rugosa	Rorug02G0111500 Rorug04G0057000 Rorug05G0263600 Rorug06G0260800
rosa_samantha	Rh1BG051400 Rh2CG166500 Rh6BG194900 Rh6BG380500 Rh6DG172500 Rh7DG016200
rosa_wichuraiana	Rw2G012490 Rw4G002730 Rw6G032480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	284
AccI	GTMKAC	2 cut(s)	118, 886
AciI	CCGC	2 cut(s)	74, 407
AclWI	GGATC	6 cut(s)	374, 433, 439, 808, 874, 1017
AcsI	RAATTY	4 cut(s)	140, 545, 727, 814
AcuI	CTGAAG	1 cut(s)	1037
AcvI	CACGTG	1 cut(s)	56
AfaI	GTAC	3 cut(s)	107, 160, 314
AfiI	CCNNNNNNNGG	5 cut(s)	102, 352, 438, 439, 919
AflIII	ACRYGT	1 cut(s)	55
AgsI	TTSAA	3 cut(s)	248, 545, 814
AjnI	CCWGG	4 cut(s)	145, 432, 762, 828
AluBI	AGCT	2 cut(s)	1075, 1102
AluI	AGCT	2 cut(s)	1075, 1102
Alw26I	GTCTC	3 cut(s)	629, 955, 1114
AlwI	GGATC	6 cut(s)	374, 433, 439, 808, 874, 1017
AoxI	GGCC	3 cut(s)	272, 379, 1157
ApeKI	GCWGC	6 cut(s)	83, 335, 466, 519, 1072, 1099
ApoI	RAATTY	4 cut(s)	140, 545, 727, 814
ArsI	GACNNNNNNTTYG	4 cut(s)	712, 728, 744, 760
AspA2I	CCTAGG	1 cut(s)	740
AspLEI	GCGC	2 cut(s)	466, 565
AspS9I	GGNCC	3 cut(s)	272, 379, 981
AsuC2I	CCSGG	1 cut(s)	914
AsuHPI	GGTGA	6 cut(s)	454, 543, 802, 883, 985, 1104
AsuNHI	GCTAGC	1 cut(s)	91
AvaII	GGWCC	1 cut(s)	981
AvrII	CCTAGG	1 cut(s)	740
BbrPI	CACGTG	1 cut(s)	56
BbsI	GAAGAC	1 cut(s)	26
BbvI	GCAGC	6 cut(s)	95, 322, 453, 531, 1084, 1111
BccI	CCATC	2 cut(s)	311, 1058
BceAI	ACGGC	1 cut(s)	477
BcgI	CGANNNNNNTGC	2 cut(s)	108, 142
BciT130I	CCWGG	4 cut(s)	147, 434, 764, 830
BclI	TGATCA	1 cut(s)	454
BcnI	CCSGG	1 cut(s)	914
BcoDI	GTCTC	3 cut(s)	629, 955, 1114
BfaI	CTAG	3 cut(s)	92, 708, 741
BfmI	CTRYAG	1 cut(s)	558
BfoI	RGCGCY	2 cut(s)	467, 566
BisI	GCNGC	7 cut(s)	84, 336, 408, 467, 520, 1073, 1100
BlnI	CCTAGG	1 cut(s)	740
BlsI	GCNGC	7 cut(s)	85, 337, 409, 468, 521, 1074, 1101
Bme1390I	CCNGG	5 cut(s)	147, 434, 764, 830, 914
Bme18I	GGWCC	1 cut(s)	981
BmgT120I	GGNCC	3 cut(s)	272, 379, 981
BmiI	GGNNCC	3 cut(s)	761, 982, 1044
BmrFI	CCNGG	5 cut(s)	147, 434, 764, 830, 914
BmsI	GCATC	1 cut(s)	478
BmtI	GCTAGC	1 cut(s)	95
BpiI	GAAGAC	1 cut(s)	26
BpmI	CTGGAG	2 cut(s)	62, 851
BpuMI	CCSGG	1 cut(s)	914
BsaAI	YACGTR	1 cut(s)	56
BsaJI	CCNNGG	5 cut(s)	145, 275, 432, 433, 740
BsaWI	WCCGGW	1 cut(s)	385
Bsc4I	CCNNNNNNNGG	5 cut(s)	102, 352, 438, 439, 919
Bse118I	RCCGGY	1 cut(s)	553
Bse1I	ACTGG	3 cut(s)	514, 792, 924
BseBI	CCWGG	4 cut(s)	147, 434, 764, 830
BseDI	CCNNGG	5 cut(s)	145, 275, 432, 433, 740
BseGI	GGATG	2 cut(s)	676, 842
BseLI	CCNNNNNNNGG	5 cut(s)	102, 352, 438, 439, 919
BseMII	CTCAG	3 cut(s)	63, 738, 762
BseNI	ACTGG	3 cut(s)	514, 792, 924
BseXI	GCAGC	6 cut(s)	95, 322, 453, 531, 1084, 1111
BsgI	GTGCAG	1 cut(s)	538
Bsh1285I	CGRYCG	1 cut(s)	100
BshFI	GGCC	3 cut(s)	274, 381, 1159
BsiEI	CGRYCG	1 cut(s)	100
BsiSI	CCGG	4 cut(s)	386, 554, 566, 914
BslFI	GGGAC	1 cut(s)	894
BslI	CCNNNNNNNGG	5 cut(s)	102, 352, 438, 439, 919
BsmAI	GTCTC	3 cut(s)	629, 955, 1114
BsmFI	GGGAC	1 cut(s)	894
BsnI	GGCC	3 cut(s)	274, 381, 1159
BspACI	CCGC	2 cut(s)	74, 407
BspANI	GGCC	3 cut(s)	274, 381, 1159
BspCNI	CTCAG	3 cut(s)	62, 739, 763
BspLI	GGNNCC	3 cut(s)	761, 982, 1044
BspOI	GCTAGC	1 cut(s)	95
BspPI	GGATC	6 cut(s)	374, 433, 439, 808, 874, 1017
BsrFI	RCCGGY	1 cut(s)	553
BsrI	ACTGG	3 cut(s)	514, 792, 924
BssAI	RCCGGY	1 cut(s)	553
BssECI	CCNNGG	5 cut(s)	145, 275, 432, 433, 740
BssT1I	CCWWGG	2 cut(s)	275, 740
Bst2UI	CCWGG	4 cut(s)	147, 434, 764, 830
Bst4CI	ACNGT	1 cut(s)	997
Bst6I	CTCTTC	1 cut(s)	9
BstBAI	YACGTR	1 cut(s)	56
BstC8I	GCNNGC	3 cut(s)	81, 93, 693
BstDEI	CTNAG	4 cut(s)	49, 747, 771, 1161
BstF5I	GGATG	2 cut(s)	676, 842
BstH2I	RGCGCY	2 cut(s)	467, 566
BstHHI	GCGC	2 cut(s)	466, 565
BstMAI	GTCTC	3 cut(s)	629, 955, 1114
BstMCI	CGRYCG	1 cut(s)	100
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 92, 271, 1081
BstNI	CCWGG	4 cut(s)	147, 434, 764, 830
BstSCI	CCNGG	5 cut(s)	145, 432, 762, 828, 912
BstSFI	CTRYAG	1 cut(s)	558
BstV1I	GCAGC	6 cut(s)	95, 322, 453, 531, 1084, 1111
BstV2I	GAAGAC	1 cut(s)	26
BsuRI	GGCC	3 cut(s)	274, 381, 1159
BtsCI	GGATG	2 cut(s)	676, 842
BtsIMutI	CAGTG	2 cut(s)	521, 785
Cac8I	GCNNGC	3 cut(s)	81, 93, 693
CfoI	GCGC	2 cut(s)	466, 565
Cfr10I	RCCGGY	1 cut(s)	553
Cfr13I	GGNCC	3 cut(s)	272, 379, 981
CsiI	ACCWGGT	1 cut(s)	762
Csp6I	GTAC	3 cut(s)	106, 159, 313
CviAII	CATG	5 cut(s)	109, 208, 266, 629, 1028
CviQI	GTAC	3 cut(s)	106, 159, 313
DdeI	CTNAG	4 cut(s)	49, 747, 771, 1161
Eam1104I	CTCTTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	9
Eco130I	CCWWGG	2 cut(s)	275, 740
Eco147I	AGGCCT	1 cut(s)	1159
Eco47I	GGWCC	1 cut(s)	981
Eco57I	CTGAAG	1 cut(s)	1037
Eco72I	CACGTG	1 cut(s)	56
EcoO109I	RGGNCCY	2 cut(s)	272, 379
EcoRII	CCWGG	4 cut(s)	145, 432, 762, 828
EcoT14I	CCWWGG	2 cut(s)	275, 740
ErhI	CCWWGG	2 cut(s)	275, 740
FaeI	CATG	5 cut(s)	112, 211, 269, 632, 1031
FaqI	GGGAC	1 cut(s)	894
FatI	CATG	5 cut(s)	108, 207, 265, 628, 1027
FauI	CCCGC	1 cut(s)	67
FbaI	TGATCA	1 cut(s)	454
FblI	GTMKAC	2 cut(s)	118, 886
Fnu4HI	GCNGC	7 cut(s)	84, 336, 408, 467, 520, 1073, 1100
FokI	GGATG	2 cut(s)	683, 829
Fsp4HI	GCNGC	7 cut(s)	84, 336, 408, 467, 520, 1073, 1100
FspBI	CTAG	3 cut(s)	92, 708, 741
GlaI	GCGC	2 cut(s)	465, 564
GluI	GCNGC	7 cut(s)	84, 336, 408, 467, 520, 1073, 1100
GsuI	CTGGAG	2 cut(s)	62, 851
HaeII	RGCGCY	2 cut(s)	467, 566
HaeIII	GGCC	3 cut(s)	274, 381, 1159
HapII	CCGG	4 cut(s)	386, 554, 566, 914
HhaI	GCGC	2 cut(s)	466, 565
Hin1II	CATG	5 cut(s)	112, 211, 269, 632, 1031
Hin6I	GCGC	2 cut(s)	464, 563
HinP1I	GCGC	2 cut(s)	464, 563
HincII	GTYRAC	1 cut(s)	119
HindII	GTYRAC	1 cut(s)	119
HinfI	GANTC	5 cut(s)	150, 199, 349, 372, 950
HpaII	CCGG	4 cut(s)	386, 554, 566, 914
HphI	GGTGA	6 cut(s)	454, 543, 802, 883, 985, 1104
Hpy166II	GTNNAC	2 cut(s)	119, 887
Hpy188I	TCNGA	8 cut(s)	371, 449, 474, 596, 748, 772, 909, 1042
Hpy188III	TCNNGA	4 cut(s)	41, 203, 239, 960
Hpy8I	GTNNAC	2 cut(s)	119, 887
HpyAV	CCTTC	5 cut(s)	392, 749, 917, 1128, 1135
HpyCH4III	ACNGT	1 cut(s)	997
HpyCH4IV	ACGT	3 cut(s)	55, 250, 883
HpyCH4V	TGCA	8 cut(s)	83, 265, 338, 469, 519, 691, 1072, 1084
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 92, 271, 1081
HpyF3I	CTNAG	4 cut(s)	49, 747, 771, 1161
HpySE526I	ACGT	3 cut(s)	55, 250, 883
Hsp92II	CATG	5 cut(s)	112, 211, 269, 632, 1031
HspAI	GCGC	2 cut(s)	464, 563
Ksp22I	TGATCA	1 cut(s)	454
Lsp1109I	GCAGC	6 cut(s)	95, 322, 453, 531, 1084, 1111
LweI	GCATC	1 cut(s)	478
MabI	ACCWGGT	1 cut(s)	762
MaeI	CTAG	3 cut(s)	92, 708, 741
MaeII	ACGT	3 cut(s)	55, 250, 883
MaeIII	GTNAC	3 cut(s)	251, 393, 644
MboII	GAAGA	5 cut(s)	26, 26, 494, 948, 1135
MfeI	CAATTG	1 cut(s)	8
MlyI	GAGTC	1 cut(s)	381
MslI	CAYNNNNRTG	2 cut(s)	527, 1092
MspA1I	CMGCKG	2 cut(s)	74, 1102
MspI	CCGG	4 cut(s)	386, 554, 566, 914
MspR9I	CCNGG	5 cut(s)	147, 434, 764, 830, 914
MunI	CAATTG	1 cut(s)	8
MvaI	CCWGG	4 cut(s)	147, 434, 764, 830
MwoI	GCNNNNNNNGC	4 cut(s)	80, 92, 271, 1081
NciI	CCSGG	1 cut(s)	914
NheI	GCTAGC	1 cut(s)	91
NlaIII	CATG	5 cut(s)	112, 211, 269, 632, 1031
NlaIV	GGNNCC	3 cut(s)	761, 982, 1044
NmuCI	GTSAC	1 cut(s)	644
PasI	CCCWGGG	1 cut(s)	433
PceI	AGGCCT	1 cut(s)	1159
PfeI	GAWTC	4 cut(s)	150, 199, 349, 950
PfoI	TCCNGGA	1 cut(s)	828
PkrI	GCNGC	7 cut(s)	85, 337, 409, 468, 521, 1074, 1101
Ple19I	CGATCG	1 cut(s)	100
PleI	GAGTC	1 cut(s)	380
PmaCI	CACGTG	1 cut(s)	56
PmlI	CACGTG	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	380
Ppu21I	YACGTR	1 cut(s)	56
PsiI	TTATAA	1 cut(s)	284
Psp6I	CCWGG	4 cut(s)	145, 432, 762, 828
PspCI	CACGTG	1 cut(s)	56
PspGI	CCWGG	4 cut(s)	145, 432, 762, 828
PspN4I	GGNNCC	3 cut(s)	761, 982, 1044
PspPI	GGNCC	3 cut(s)	272, 379, 981
PvuI	CGATCG	1 cut(s)	100
PvuII	CAGCTG	1 cut(s)	1102
RsaI	GTAC	3 cut(s)	107, 160, 314
RsaNI	GTAC	3 cut(s)	106, 159, 313
RseI	CAYNNNNRTG	2 cut(s)	527, 1092
SalI	GTCGAC	1 cut(s)	117
SatI	GCNGC	7 cut(s)	84, 336, 408, 467, 520, 1073, 1100
Sau96I	GGNCC	3 cut(s)	272, 379, 981
SchI	GAGTC	1 cut(s)	381
ScrFI	CCNGG	5 cut(s)	147, 434, 764, 830, 914
SexAI	ACCWGGT	1 cut(s)	762
SfaNI	GCATC	1 cut(s)	478
SfcI	CTRYAG	1 cut(s)	558
SinI	GGWCC	1 cut(s)	981
SmiMI	CAYNNNNRTG	2 cut(s)	527, 1092
SseBI	AGGCCT	1 cut(s)	1159
SsiI	CCGC	2 cut(s)	74, 407
SspMI	CTAG	3 cut(s)	92, 708, 741
StuI	AGGCCT	1 cut(s)	1159
StyD4I	CCNGG	5 cut(s)	145, 432, 762, 828, 912
StyI	CCWWGG	2 cut(s)	275, 740
TaaI	ACNGT	1 cut(s)	997
TaiI	ACGT	3 cut(s)	58, 253, 886
TaqI	TCGA	5 cut(s)	118, 238, 428, 959, 1139
TauI	GCSGC	1 cut(s)	410
TfiI	GAWTC	4 cut(s)	150, 199, 349, 950
TscAI	CASTG	2 cut(s)	521, 792
TseFI	GTSAC	1 cut(s)	644
TseI	GCWGC	6 cut(s)	83, 335, 466, 519, 1072, 1099
Tsp45I	GTSAC	1 cut(s)	644
TspDTI	ATGAA	5 cut(s)	26, 197, 600, 687, 842
TspGWI	ACGGA	1 cut(s)	663
TspRI	CASTG	2 cut(s)	521, 792
VpaK11BI	GGWCC	1 cut(s)	981
XapI	RAATTY	4 cut(s)	140, 545, 727, 814
XmaJI	CCTAGG	1 cut(s)	740
XmiI	GTMKAC	2 cut(s)	118, 886
XspI	CTAG	3 cut(s)	92, 708, 741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.