Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003233

Physical Location & Seq

Genomic Coordinates Forward (+)

29096020 .. 29098494

Gene Structure 2475 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G77440.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGTCGATCTTCGAGTACAATGGAAGTGCCGTCGTAGCTATGGTAGGGAAGAATTGCTTCGCTATAGCTAGTGATCGGAGGCTTGGTGTGCAATTACAAACCATTGCTACCGATTTTCAGAGAATATCTAAGATCCACGATCATCTCTTCATCGGACTTTCCGGTCTCGCCACCGATGTCCAGACATTGTACCAGCGACTCGTATTTCGTCATAAGTTATATCAGCTTAGGGAAGAAAGAGACATGAAGCCTGAAACTTTCGCTAGTCTTGTATCGGCTATTCTTTATGAGAAAAGATTTGGCCCATTCTTGTGCCAACCTGTGATTGCTGGATTGGGAGATGATAACAAACCCTTCATTTGCACTATGGATTCTATTGGAGCCAAGGAGTTAGCTAAAGATTTTGTTGTCTCGGGAACTGCTTCAGAATCTCTATATGGTGCCTGTGAAGCCATGTTCAAACCAGATATGGAAGCTGAGGAACTATTCGAGACAATTTCACAAGCACTTCTCTCTTCAGTTGACCGCGATTGTCTTAGTGGGTGGGGAGGACATGTCTACGTTGTAACACCAAAGGAGGTGAAGGAGAGAATCCTGAAGGGAAGGATGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005839 GO:0016020 GO:0019774 GO:0031090 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

204

Amino Acids

22.76

Weight (kDa)

5.63

Isoelectric Point (pI)

32.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome	PF00227	7 - 189	2.1e-46	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21720 AT1G77440 AT1G77440
fragaria_vesca	FvH4_2g27460
malus_domestica	MD00G1028400.v1.1 MD15G1344700.v1.1
prunus_persica	Prupe.1G492900_v2.0.a1
pyrus_communis	pycom08g13680 pycom15g30930
rosa_chinensis	RchiOBHm_Chr2g0103031 RchiOBHm_Chr2g0140351 RchiOBHm_Chr4g0425031 RchiOBHm_Chr5g0069521 RchiOBHm_Chr6g0296301
rosa_laevigata	RLG00000003407 RLG00000011708 RLG00000019374
rosa_multiflora	Rmu_co8088830.1_g000001 Rmu_sc0000388.1_g000016 Rmu_sc0004708.1_g000006 Rmu_sc0022551.1_g000001
rosa_roxburghii	Rroxscaffold_2G00139980 Rroxscaffold_7G00171650 Rroxscaffold_7G00178420
rosa_rugosa	Rorug02G0111500 Rorug04G0057000 Rorug05G0263600 Rorug06G0260800
rosa_samantha	Rh1BG051400 Rh2CG166500 Rh6BG194900 Rh6BG380500 Rh6DG172500 Rh7DG016200
rosa_wichuraiana	Rw2G012490 Rw4G002730 Rw6G032480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	162
AccB1I	GGYRCC	1 cut(s)	440
AccI	GTMKAC	1 cut(s)	558
AccII	CGCG	1 cut(s)	528
AciI	CCGC	1 cut(s)	526
AclWI	GGATC	1 cut(s)	127
AcuI	CTGAAG	2 cut(s)	408, 501
AfaI	GTAC	2 cut(s)	17, 191
AflIII	ACRYGT	1 cut(s)	553
AgsI	TTSAA	1 cut(s)	460
AluBI	AGCT	5 cut(s)	38, 68, 226, 395, 476
AluI	AGCT	5 cut(s)	38, 68, 226, 395, 476
Alw26I	GTCTC	4 cut(s)	170, 234, 415, 485
AlwI	GGATC	1 cut(s)	127
Ama87I	CYCGRG	1 cut(s)	412
AoxI	GGCC	1 cut(s)	301
ArsI	GACNNNNNNTTYG	2 cut(s)	189, 221
Asp700I	GAANNNNTTC	2 cut(s)	56, 421
AspS9I	GGNCC	1 cut(s)	302
AsuHPI	GGTGA	1 cut(s)	592
AvaI	CYCGRG	1 cut(s)	412
BanI	GGYRCC	1 cut(s)	440
BbvCI	CCTCAGC	1 cut(s)	477
BccI	CCATC	1 cut(s)	601
BceAI	ACGGC	1 cut(s)	14
BcoDI	GTCTC	4 cut(s)	170, 234, 415, 485
BfaI	CTAG	2 cut(s)	69, 264
BfmI	CTRYAG	1 cut(s)	63
BmeT110I	CYCGRG	1 cut(s)	412
BmgT120I	GGNCC	1 cut(s)	302
BmiI	GGNNCC	2 cut(s)	382, 442
Bpu10I	CCTNAGC	2 cut(s)	227, 477
BsaI	GGTCTC	1 cut(s)	170
BsaJI	CCNNGG	1 cut(s)	384
BsaWI	WCCGGW	1 cut(s)	161
BsaXI	ACNNNNNCTCC	4 cut(s)	70, 100, 540, 570
Bse3DI	GCAATG	1 cut(s)	102
BseDI	CCNNGG	1 cut(s)	384
BseGI	GGATG	1 cut(s)	612
BseMI	GCAATG	1 cut(s)	102
BseMII	CTCAG	1 cut(s)	468
Bsh1236I	CGCG	1 cut(s)	528
BshFI	GGCC	1 cut(s)	303
BshNI	GGYRCC	1 cut(s)	440
BsiHKCI	CYCGRG	1 cut(s)	412
BsiSI	CCGG	1 cut(s)	162
BsmAI	GTCTC	4 cut(s)	170, 234, 415, 485
BsnI	GGCC	1 cut(s)	303
Bso31I	GGTCTC	1 cut(s)	170
BsoBI	CYCGRG	1 cut(s)	412
Bsp143I	GATC	4 cut(s)	6, 73, 132, 139
BspACI	CCGC	1 cut(s)	526
BspANI	GGCC	1 cut(s)	303
BspCNI	CTCAG	1 cut(s)	469
BspFNI	CGCG	1 cut(s)	528
BspLI	GGNNCC	2 cut(s)	382, 442
BspPI	GGATC	1 cut(s)	127
BspT107I	GGYRCC	1 cut(s)	440
BspTNI	GGTCTC	1 cut(s)	170
BsrDI	GCAATG	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	384
BssMI	GATC	4 cut(s)	6, 73, 132, 139
BssT1I	CCWWGG	1 cut(s)	384
Bst6I	CTCTTC	2 cut(s)	152, 520
BstDEI	CTNAG	4 cut(s)	129, 227, 477, 536
BstF5I	GGATG	1 cut(s)	612
BstFNI	CGCG	1 cut(s)	528
BstKTI	GATC	4 cut(s)	9, 76, 135, 142
BstMAI	GTCTC	4 cut(s)	170, 234, 415, 485
BstMBI	GATC	4 cut(s)	6, 73, 132, 139
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 88, 449
BstNSI	RCATGY	1 cut(s)	557
BstSFI	CTRYAG	1 cut(s)	63
BstUI	CGCG	1 cut(s)	528
BstX2I	RGATCY	1 cut(s)	132
BstYI	RGATCY	1 cut(s)	132
BsuRI	GGCC	1 cut(s)	303
BtsCI	GGATG	1 cut(s)	612
Cfr13I	GGNCC	1 cut(s)	302
Csp6I	GTAC	2 cut(s)	16, 190
CviAII	CATG	3 cut(s)	244, 454, 554
CviQI	GTAC	2 cut(s)	16, 190
DdeI	CTNAG	4 cut(s)	129, 227, 477, 536
DpnI	GATC	4 cut(s)	8, 75, 134, 141
DpnII	GATC	4 cut(s)	6, 73, 132, 139
DrdI	GACNNNNNNGTC	1 cut(s)	162
DseDI	GACNNNNNNGTC	1 cut(s)	162
Eam1104I	CTCTTC	2 cut(s)	152, 520
EarI	CTCTTC	2 cut(s)	152, 520
Eco130I	CCWWGG	1 cut(s)	384
Eco31I	GGTCTC	1 cut(s)	170
Eco57I	CTGAAG	2 cut(s)	408, 501
Eco88I	CYCGRG	1 cut(s)	412
EcoT14I	CCWWGG	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	384
FaeI	CATG	3 cut(s)	247, 457, 557
FalI	AAGNNNNNCTT	2 cut(s)	41, 73
FatI	CATG	3 cut(s)	243, 453, 553
FblI	GTMKAC	1 cut(s)	558
FspBI	CTAG	2 cut(s)	69, 264
HaeIII	GGCC	1 cut(s)	303
HapII	CCGG	1 cut(s)	162
Hin1II	CATG	3 cut(s)	247, 457, 557
HincII	GTYRAC	1 cut(s)	523
HindII	GTYRAC	1 cut(s)	523
HinfI	GANTC	4 cut(s)	198, 371, 428, 591
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	1 cut(s)	592
Hpy166II	GTNNAC	2 cut(s)	523, 559
Hpy188I	TCNGA	4 cut(s)	78, 120, 155, 427
Hpy188III	TCNNGA	4 cut(s)	181, 414, 490, 595
Hpy8I	GTNNAC	2 cut(s)	523, 559
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	4 cut(s)	364, 577, 592, 597
HpyCH4IV	ACGT	1 cut(s)	561
HpyCH4V	TGCA	2 cut(s)	91, 363
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 88, 449
HpyF3I	CTNAG	4 cut(s)	129, 227, 477, 536
HpySE526I	ACGT	1 cut(s)	561
Hsp92II	CATG	3 cut(s)	247, 457, 557
Kzo9I	GATC	4 cut(s)	6, 73, 132, 139
LmnI	GCTCC	1 cut(s)	380
LpnPI	CCDG	9 cut(s)	175, 194, 206, 264, 315, 333, 457, 477, 608
MaeI	CTAG	2 cut(s)	69, 264
MaeII	ACGT	1 cut(s)	561
MaeIII	GTNAC	1 cut(s)	565
MalI	GATC	4 cut(s)	8, 75, 134, 141
MboI	GATC	4 cut(s)	6, 73, 132, 139
MboII	GAAGA	4 cut(s)	61, 139, 245, 507
MflI	RGATCY	1 cut(s)	132
MluCI	AATT	3 cut(s)	52, 92, 495
MlyI	GAGTC	1 cut(s)	192
MnlI	CCTC	4 cut(s)	72, 472, 542, 571
MroXI	GAANNNNTTC	2 cut(s)	56, 421
MslI	CAYNNNNRTG	1 cut(s)	310
MspI	CCGG	1 cut(s)	162
MvnI	CGCG	1 cut(s)	528
MwoI	GCNNNNNNNGC	3 cut(s)	35, 88, 449
NdeII	GATC	4 cut(s)	6, 73, 132, 139
NlaIII	CATG	3 cut(s)	247, 457, 557
NlaIV	GGNNCC	2 cut(s)	382, 442
NspI	RCATGY	1 cut(s)	557
PciI	ACATGT	1 cut(s)	553
PdmI	GAANNNNTTC	2 cut(s)	56, 421
PfeI	GAWTC	3 cut(s)	371, 428, 591
PleI	GAGTC	1 cut(s)	192
PpsI	GAGTC	1 cut(s)	192
PscI	ACATGT	1 cut(s)	553
PspN4I	GGNNCC	2 cut(s)	382, 442
PspPI	GGNCC	1 cut(s)	302
PsuI	RGATCY	1 cut(s)	132
RsaI	GTAC	2 cut(s)	17, 191
RsaNI	GTAC	2 cut(s)	16, 190
RseI	CAYNNNNRTG	1 cut(s)	310
Sau3AI	GATC	4 cut(s)	6, 73, 132, 139
Sau96I	GGNCC	1 cut(s)	302
SchI	GAGTC	1 cut(s)	192
SetI	ASST	8 cut(s)	40, 70, 228, 322, 397, 478, 564, 582
SfcI	CTRYAG	1 cut(s)	63
SmiMI	CAYNNNNRTG	1 cut(s)	310
Sse9I	AATT	3 cut(s)	52, 92, 495
SsiI	CCGC	1 cut(s)	526
SspMI	CTAG	2 cut(s)	69, 264
StyI	CCWWGG	1 cut(s)	384
TaiI	ACGT	1 cut(s)	564
TaqI	TCGA	3 cut(s)	5, 12, 489
TasI	AATT	3 cut(s)	52, 92, 495
TatI	WGTACW	1 cut(s)	15
TfiI	GAWTC	3 cut(s)	371, 428, 591
TspDTI	ATGAA	3 cut(s)	139, 260, 346
XceI	RCATGY	1 cut(s)	557
XmiI	GTMKAC	1 cut(s)	558
XmnI	GAANNNNTTC	2 cut(s)	56, 421
XspI	CTAG	2 cut(s)	69, 264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.