Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003233

Physical Location & Seq

Genomic Coordinates Reverse (-)

30010757 .. 30012289

Gene Structure 1533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG172500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGTTTAAGCACAAGTTGTACCAGCTAAGGGAAGAGAGGGATATGAAGCCTGAGACTTTTGCTAGACTCGTCTCAGCTATTATCTATTATCTACGAGAAAAGGCTAAGGCCATGGCTGGTGACACTGTTGTAAGGTCATTGCTAGAAAAGATGGCTGAATGTGCTAGCAATGCGTACCTGGGTATATTAGTGAGGTGGGTCTATGAAGGAGTCATTGATGATCCTTATGGTGAATTTTTCATTGCTGAGAACAAATCTCTTCAAAAGGAAAGCCTCAAGATTATGAAGCCAAGTATTGGAGGCAGCGTTGTGCATATGTTATCATTCTTTTTGGTTCCTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000278 GO:0000280 GO:0000923 GO:0000930 GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0007051 GO:0007052 GO:0007098 GO:0008092 GO:0008150 GO:0008275 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0031023 GO:0031109 GO:0031122 GO:0031974 GO:0031981 GO:0032153 GO:0032155 GO:0032991 GO:0034622 GO:0043015 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0046785 GO:0048285 GO:0051225 GO:0051258 GO:0051298 GO:0051321 GO:0051415 GO:0051418 GO:0065003 GO:0070013 GO:0070925 GO:0071840 GO:0090307 GO:0097435 GO:0140014 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spc97_Spc98

Protein Analysis

114

Amino Acids

13.11

Weight (kDa)

8.66

Isoelectric Point (pI)

42.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCP_N_terminal	PF17681	26 - 92	1.7e-16	Gamma tubulin complex component N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21720 AT1G77440 AT1G77440
fragaria_vesca	FvH4_2g27460
malus_domestica	MD00G1028400.v1.1 MD15G1344700.v1.1
prunus_persica	Prupe.1G492900_v2.0.a1
pyrus_communis	pycom08g13680 pycom15g30930
rosa_chinensis	RchiOBHm_Chr2g0103031 RchiOBHm_Chr2g0140351 RchiOBHm_Chr4g0425031 RchiOBHm_Chr5g0069521 RchiOBHm_Chr6g0296301
rosa_laevigata	RLG00000003407 RLG00000011708 RLG00000019374
rosa_multiflora	Rmu_co8088830.1_g000001 Rmu_sc0000388.1_g000016 Rmu_sc0004708.1_g000006 Rmu_sc0022551.1_g000001
rosa_roxburghii	Rroxscaffold_2G00139980 Rroxscaffold_7G00171650 Rroxscaffold_7G00178420
rosa_rugosa	Rorug02G0111500 Rorug04G0057000 Rorug05G0263600 Rorug06G0260800
rosa_samantha	Rh1BG051400 Rh2CG166500 Rh6BG194900 Rh6BG380500 Rh6DG172500 Rh7DG016200
rosa_wichuraiana	Rw2G012490 Rw4G002730 Rw6G032480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	296
AclWI	GGATC	1 cut(s)	215
AcsI	RAATTY	1 cut(s)	233
AfaI	GTAC	2 cut(s)	20, 176
AfiI	CCNNNNNNNGG	2 cut(s)	28, 296
AgsI	TTSAA	1 cut(s)	263
AjnI	CCWGG	1 cut(s)	177
AluBI	AGCT	2 cut(s)	25, 77
AluI	AGCT	2 cut(s)	25, 77
Alw26I	GTCTC	2 cut(s)	47, 76
AlwI	GGATC	1 cut(s)	215
AoxI	GGCC	1 cut(s)	108
ApeKI	GCWGC	1 cut(s)	303
ApoI	RAATTY	1 cut(s)	233
AsuHPI	GGTGA	2 cut(s)	131, 242
AsuNHI	GCTAGC	1 cut(s)	164
BbvI	GCAGC	1 cut(s)	315
BccI	CCATC	1 cut(s)	145
BciT130I	CCWGG	1 cut(s)	179
BcoDI	GTCTC	2 cut(s)	47, 76
BfaI	CTAG	3 cut(s)	63, 143, 165
BisI	GCNGC	1 cut(s)	304
BlsI	GCNGC	1 cut(s)	305
Bme1390I	CCNGG	1 cut(s)	179
BmiI	GGNNCC	1 cut(s)	336
BmrFI	CCNGG	1 cut(s)	179
BmtI	GCTAGC	1 cut(s)	168
Bpu10I	CCTNAGC	2 cut(s)	26, 105
BpuEI	CTTGAG	1 cut(s)	260
BsaJI	CCNNGG	2 cut(s)	111, 178
BsaXI	ACNNNNNCTCC	2 cut(s)	291, 321
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 296
Bse3DI	GCAATG	3 cut(s)	137, 175, 240
BseBI	CCWGG	1 cut(s)	179
BseDI	CCNNGG	2 cut(s)	111, 178
BseLI	CCNNNNNNNGG	2 cut(s)	28, 296
BseMI	GCAATG	3 cut(s)	137, 175, 240
BseMII	CTCAG	3 cut(s)	42, 87, 237
BseXI	GCAGC	1 cut(s)	315
BshFI	GGCC	1 cut(s)	110
BslI	CCNNNNNNNGG	2 cut(s)	28, 296
BsmAI	GTCTC	2 cut(s)	47, 76
BsmBI	CGTCTC	1 cut(s)	76
BsnI	GGCC	1 cut(s)	110
Bsp143I	GATC	1 cut(s)	220
Bsp19I	CCATGG	1 cut(s)	111
BspANI	GGCC	1 cut(s)	110
BspCNI	CTCAG	3 cut(s)	43, 86, 238
BspLI	GGNNCC	1 cut(s)	336
BspOI	GCTAGC	1 cut(s)	168
BspPI	GGATC	1 cut(s)	215
BsrDI	GCAATG	3 cut(s)	137, 175, 240
BssECI	CCNNGG	2 cut(s)	111, 178
BssMI	GATC	1 cut(s)	220
BssT1I	CCWWGG	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	179
Bst4CI	ACNGT	1 cut(s)	127
Bst6I	CTCTTC	2 cut(s)	27, 264
BstC8I	GCNNGC	1 cut(s)	166
BstDEI	CTNAG	5 cut(s)	26, 51, 73, 105, 246
BstDSI	CCRYGG	1 cut(s)	111
BstKTI	GATC	1 cut(s)	223
BstMAI	GTCTC	2 cut(s)	47, 76
BstMBI	GATC	1 cut(s)	220
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 170
BstNI	CCWGG	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	177
BstV1I	GCAGC	1 cut(s)	315
BsuRI	GGCC	1 cut(s)	110
BtgI	CCRYGG	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	123
Cac8I	GCNNGC	1 cut(s)	166
Csp6I	GTAC	2 cut(s)	19, 175
CviAII	CATG	1 cut(s)	112
CviJI	RGCY	9 cut(s)	25, 49, 77, 104, 110, 116, 155, 273, 289
CviKI_1	RGCY	9 cut(s)	25, 49, 77, 104, 110, 116, 155, 273, 289
CviQI	GTAC	2 cut(s)	19, 175
DdeI	CTNAG	5 cut(s)	26, 51, 73, 105, 246
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
Eam1104I	CTCTTC	2 cut(s)	27, 264
EarI	CTCTTC	2 cut(s)	27, 264
Eco130I	CCWWGG	1 cut(s)	111
EcoRII	CCWGG	1 cut(s)	177
EcoT14I	CCWWGG	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	111
Esp3I	CGTCTC	1 cut(s)	76
FaeI	CATG	1 cut(s)	115
FatI	CATG	1 cut(s)	111
FauNDI	CATATG	1 cut(s)	315
Fnu4HI	GCNGC	1 cut(s)	304
Fsp4HI	GCNGC	1 cut(s)	304
FspBI	CTAG	3 cut(s)	63, 143, 165
GluI	GCNGC	1 cut(s)	304
HaeIII	GGCC	1 cut(s)	110
Hin1II	CATG	1 cut(s)	115
HinfI	GANTC	2 cut(s)	66, 210
HphI	GGTGA	2 cut(s)	131, 242
Hpy188III	TCNNGA	1 cut(s)	277
HpyAV	CCTTC	1 cut(s)	200
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4V	TGCA	1 cut(s)	313
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 170
HpyF3I	CTNAG	5 cut(s)	26, 51, 73, 105, 246
Hsp92II	CATG	1 cut(s)	115
Kzo9I	GATC	1 cut(s)	220
LpnPI	CCDG	5 cut(s)	35, 63, 102, 164, 191
Lsp1109I	GCAGC	1 cut(s)	315
MaeI	CTAG	3 cut(s)	63, 143, 165
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	1 cut(s)	222
MboI	GATC	1 cut(s)	220
MboII	GAAGA	2 cut(s)	44, 251
MluCI	AATT	1 cut(s)	233
MlyI	GAGTC	2 cut(s)	60, 219
MnlI	CCTC	4 cut(s)	30, 186, 284, 293
MseI	TTAA	1 cut(s)	6
MspR9I	CCNGG	1 cut(s)	179
MvaI	CCWGG	1 cut(s)	179
MwoI	GCNNNNNNNGC	2 cut(s)	161, 170
NcoI	CCATGG	1 cut(s)	111
NdeI	CATATG	1 cut(s)	315
NdeII	GATC	1 cut(s)	220
NheI	GCTAGC	1 cut(s)	164
NlaIII	CATG	1 cut(s)	115
NlaIV	GGNNCC	1 cut(s)	336
NmuCI	GTSAC	1 cut(s)	119
PflMI	CCANNNNNTGG	1 cut(s)	296
PkrI	GCNGC	1 cut(s)	305
PleI	GAGTC	2 cut(s)	60, 218
PpsI	GAGTC	2 cut(s)	60, 218
Psp6I	CCWGG	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	177
PspN4I	GGNNCC	1 cut(s)	336
RsaI	GTAC	2 cut(s)	20, 176
RsaNI	GTAC	2 cut(s)	19, 175
SaqAI	TTAA	1 cut(s)	6
SatI	GCNGC	1 cut(s)	304
Sau3AI	GATC	1 cut(s)	220
SchI	GAGTC	2 cut(s)	60, 219
ScrFI	CCNGG	1 cut(s)	179
SetI	ASST	5 cut(s)	27, 79, 137, 180, 197
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	1 cut(s)	233
SspMI	CTAG	3 cut(s)	63, 143, 165
StyD4I	CCNGG	1 cut(s)	177
StyI	CCWWGG	1 cut(s)	111
TaaI	ACNGT	1 cut(s)	127
TasI	AATT	1 cut(s)	233
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TscAI	CASTG	1 cut(s)	130
TseFI	GTSAC	1 cut(s)	119
TseI	GCWGC	1 cut(s)	303
Tsp45I	GTSAC	1 cut(s)	119
TspDTI	ATGAA	4 cut(s)	59, 219, 229, 299
TspRI	CASTG	1 cut(s)	130
Van91I	CCANNNNNTGG	1 cut(s)	296
XapI	RAATTY	1 cut(s)	233
XspI	CTAG	3 cut(s)	63, 143, 165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.