Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003233

Physical Location & Seq

Genomic Coordinates Reverse (-)

57737402 .. 57741677

Gene Structure 4276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51080

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGTTTAAGCACAAGTTGTACCAGCTAAGGGAAGAGAGGGATATGAAGCCTGAGACTTTTGCTAGACTCGTCTCAGCTATTATCTATTATCTACGAGAAAAGGCTAAGGCCATGGCTGGTGATACTGTTGTAAGGTCATTGCTAGAAAAGATGGCTGAATGTGCTAGCAATACGTACCTGGGTATATTAGTGAGGTACTCTTCTAGATTAATGTCTACTATTCTTTGTTTGATGAGGTTTTGCATAGAGGCTATGGGCAATTGTGCTAGAGGAAGACATGTTTCAGACCCAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000278 GO:0000280 GO:0000923 GO:0000930 GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0007051 GO:0007052 GO:0007098 GO:0008092 GO:0008150 GO:0008275 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0031023 GO:0031109 GO:0031122 GO:0031974 GO:0031981 GO:0032153 GO:0032155 GO:0032991 GO:0034622 GO:0043015 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0046785 GO:0048285 GO:0051225 GO:0051258 GO:0051298 GO:0051321 GO:0051415 GO:0051418 GO:0065003 GO:0070013 GO:0070925 GO:0071840 GO:0090307 GO:0097435 GO:0140014 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spc97_Spc98

Protein Analysis

98

Amino Acids

11.31

Weight (kDa)

9.39

Isoelectric Point (pI)

49.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21720 AT1G77440 AT1G77440
fragaria_vesca	FvH4_2g27460
malus_domestica	MD00G1028400.v1.1 MD15G1344700.v1.1
prunus_persica	Prupe.1G492900_v2.0.a1
pyrus_communis	pycom08g13680 pycom15g30930
rosa_chinensis	RchiOBHm_Chr2g0103031 RchiOBHm_Chr2g0140351 RchiOBHm_Chr4g0425031 RchiOBHm_Chr5g0069521 RchiOBHm_Chr6g0296301
rosa_laevigata	RLG00000003407 RLG00000011708 RLG00000019374
rosa_multiflora	Rmu_co8088830.1_g000001 Rmu_sc0000388.1_g000016 Rmu_sc0004708.1_g000006 Rmu_sc0022551.1_g000001
rosa_roxburghii	Rroxscaffold_2G00139980 Rroxscaffold_7G00171650 Rroxscaffold_7G00178420
rosa_rugosa	Rorug02G0111500 Rorug04G0057000 Rorug05G0263600 Rorug06G0260800
rosa_samantha	Rh1BG051400 Rh2CG166500 Rh6BG194900 Rh6BG380500 Rh6DG172500 Rh7DG016200
rosa_wichuraiana	Rw2G012490 Rw4G002730 Rw6G032480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	215
AfaI	GTAC	3 cut(s)	20, 176, 197
AfiI	CCNNNNNNNGG	1 cut(s)	28
AflIII	ACRYGT	1 cut(s)	277
AjnI	CCWGG	1 cut(s)	177
AluBI	AGCT	2 cut(s)	25, 77
AluI	AGCT	2 cut(s)	25, 77
Alw26I	GTCTC	2 cut(s)	47, 76
AoxI	GGCC	1 cut(s)	108
AseI	ATTAAT	1 cut(s)	209
AsuHPI	GGTGA	1 cut(s)	131
AsuNHI	GCTAGC	1 cut(s)	164
BaeI	ACNNNNGTAYC	2 cut(s)	114, 147
BbsI	GAAGAC	1 cut(s)	280
BccI	CCATC	1 cut(s)	145
BciT130I	CCWGG	1 cut(s)	179
BcoDI	GTCTC	2 cut(s)	47, 76
BfaI	CTAG	5 cut(s)	63, 143, 165, 204, 267
Bme1390I	CCNGG	1 cut(s)	179
BmrFI	CCNGG	1 cut(s)	179
BmtI	GCTAGC	1 cut(s)	168
BpiI	GAAGAC	1 cut(s)	280
Bpu10I	CCTNAGC	2 cut(s)	26, 105
BsaAI	YACGTR	1 cut(s)	174
BsaJI	CCNNGG	2 cut(s)	111, 178
Bsc4I	CCNNNNNNNGG	1 cut(s)	28
Bse3DI	GCAATG	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	179
BseDI	CCNNGG	2 cut(s)	111, 178
BseLI	CCNNNNNNNGG	1 cut(s)	28
BseMI	GCAATG	1 cut(s)	137
BseMII	CTCAG	2 cut(s)	42, 87
BshFI	GGCC	1 cut(s)	110
BslI	CCNNNNNNNGG	1 cut(s)	28
BsmAI	GTCTC	2 cut(s)	47, 76
BsmBI	CGTCTC	1 cut(s)	76
BsnI	GGCC	1 cut(s)	110
Bsp19I	CCATGG	1 cut(s)	111
BspANI	GGCC	1 cut(s)	110
BspCNI	CTCAG	2 cut(s)	43, 86
BspOI	GCTAGC	1 cut(s)	168
BsrDI	GCAATG	1 cut(s)	137
BssECI	CCNNGG	2 cut(s)	111, 178
BssT1I	CCWWGG	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	179
Bst4CI	ACNGT	1 cut(s)	127
Bst6I	CTCTTC	2 cut(s)	27, 205
BstBAI	YACGTR	1 cut(s)	174
BstC8I	GCNNGC	1 cut(s)	166
BstDEI	CTNAG	4 cut(s)	26, 51, 73, 105
BstDSI	CCRYGG	1 cut(s)	111
BstMAI	GTCTC	2 cut(s)	47, 76
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstNI	CCWGG	1 cut(s)	179
BstNSI	RCATGY	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	177
BstSNI	TACGTA	1 cut(s)	174
BstV2I	GAAGAC	1 cut(s)	280
BsuRI	GGCC	1 cut(s)	110
BtgI	CCRYGG	1 cut(s)	111
Cac8I	GCNNGC	1 cut(s)	166
Csp6I	GTAC	3 cut(s)	19, 175, 196
CviAII	CATG	2 cut(s)	112, 278
CviJI	RGCY	8 cut(s)	25, 49, 77, 104, 110, 116, 155, 251
CviKI_1	RGCY	8 cut(s)	25, 49, 77, 104, 110, 116, 155, 251
CviQI	GTAC	3 cut(s)	19, 175, 196
DdeI	CTNAG	4 cut(s)	26, 51, 73, 105
Eam1104I	CTCTTC	2 cut(s)	27, 205
EarI	CTCTTC	2 cut(s)	27, 205
Eco105I	TACGTA	1 cut(s)	174
Eco130I	CCWWGG	1 cut(s)	111
EcoRII	CCWGG	1 cut(s)	177
EcoT14I	CCWWGG	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	111
Esp3I	CGTCTC	1 cut(s)	76
FaeI	CATG	2 cut(s)	115, 281
FaiI	YATR	6 cut(s)	44, 113, 185, 245, 254, 279
FatI	CATG	2 cut(s)	111, 277
FblI	GTMKAC	1 cut(s)	215
FspBI	CTAG	5 cut(s)	63, 143, 165, 204, 267
HaeIII	GGCC	1 cut(s)	110
Hin1II	CATG	2 cut(s)	115, 281
HinfI	GANTC	1 cut(s)	66
HphI	GGTGA	1 cut(s)	131
Hpy166II	GTNNAC	1 cut(s)	216
Hpy188I	TCNGA	1 cut(s)	286
Hpy188III	TCNNGA	1 cut(s)	204
Hpy8I	GTNNAC	1 cut(s)	216
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4IV	ACGT	1 cut(s)	173
HpyCH4V	TGCA	1 cut(s)	243
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	4 cut(s)	26, 51, 73, 105
HpySE526I	ACGT	1 cut(s)	173
Hsp92II	CATG	2 cut(s)	115, 281
LpnPI	CCDG	5 cut(s)	35, 63, 102, 164, 191
MaeI	CTAG	5 cut(s)	63, 143, 165, 204, 267
MaeII	ACGT	1 cut(s)	173
MboII	GAAGA	3 cut(s)	44, 192, 285
MfeI	CAATTG	1 cut(s)	259
MluCI	AATT	2 cut(s)	259, 292
MlyI	GAGTC	1 cut(s)	60
MnlI	CCTC	5 cut(s)	30, 186, 228, 241, 263
MseI	TTAA	2 cut(s)	6, 209
MspR9I	CCNGG	1 cut(s)	179
MunI	CAATTG	1 cut(s)	259
MvaI	CCWGG	1 cut(s)	179
MwoI	GCNNNNNNNGC	1 cut(s)	161
NcoI	CCATGG	1 cut(s)	111
NheI	GCTAGC	1 cut(s)	164
NlaIII	CATG	2 cut(s)	115, 281
NspI	RCATGY	1 cut(s)	281
PciI	ACATGT	1 cut(s)	277
PleI	GAGTC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	60
Ppu21I	YACGTR	1 cut(s)	174
PscI	ACATGT	1 cut(s)	277
PshBI	ATTAAT	1 cut(s)	209
Psp6I	CCWGG	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	177
RsaI	GTAC	3 cut(s)	20, 176, 197
RsaNI	GTAC	3 cut(s)	19, 175, 196
SaqAI	TTAA	2 cut(s)	6, 209
SchI	GAGTC	1 cut(s)	60
ScrFI	CCNGG	1 cut(s)	179
SetI	ASST	7 cut(s)	27, 79, 137, 176, 180, 197, 239
SnaBI	TACGTA	1 cut(s)	174
Sse9I	AATT	2 cut(s)	259, 292
SspMI	CTAG	5 cut(s)	63, 143, 165, 204, 267
StyD4I	CCNGG	1 cut(s)	177
StyI	CCWWGG	1 cut(s)	111
TaaI	ACNGT	1 cut(s)	127
TaiI	ACGT	1 cut(s)	176
TasI	AATT	2 cut(s)	259, 292
Tru1I	TTAA	2 cut(s)	6, 209
Tru9I	TTAA	2 cut(s)	6, 209
TspDTI	ATGAA	1 cut(s)	59
VspI	ATTAAT	1 cut(s)	209
XbaI	TCTAGA	1 cut(s)	203
XceI	RCATGY	1 cut(s)	281
XmiI	GTMKAC	1 cut(s)	215
XspI	CTAG	5 cut(s)	63, 143, 165, 204, 267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.