Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003233

Physical Location & Seq

Genomic Coordinates Forward (+)

40970413 .. 40973430

Gene Structure 3018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G492900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGTCGATCTTCGAGTACAATGGGAGTGCACTGATCGCAATGGTGGGCAAGAACTGCTTCGCCATAGCCAGCGATCGGCGCCTTGGTGTTCAGCTCCAGACCGTCGCCACCGACTTCAAGAGAATCAACCAAGTCCACGATAGGCTCTTCATCGGTCTCTCTGGCCTCGCCACCGATGCTCAGACTCTGTATCAGAGGCTTATGTTTCGCCACAAGCTGTACCAGCTTAGGGAGGAGAGGGATATGAAGCCCGAGACTTTTGCCAGCCTCGTCTCCGCTATTCTTTATGAGAAAAGGTTTGGCCCATACTTCTGTCAGCCTGTAATTGCTGGGTTAAGTGATGAAGACAGACCATTCATCTGCACCATGGATTCAATTGGGGCCAAGGAACTAGCAAAAGATTTTGTTGTTGCTGGTACTGCATCAGAGTCCCTTTATGGTGCTTGTGAGGCAATGTTCAAGCCTGATATGGAAGCAGAGGAGTTGTTTGAGATTGTCTCTCAAGCATTGCTTTCATCAGTAGATCGAGACTGTCTGAGTGGTTGGGGAGGCCACGTCTTTGTTGTTACACCAACTGAAGTGAAGGAGAGAATCTTGAAGGGAAGAATGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005839 GO:0016020 GO:0019774 GO:0031090 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

205

Amino Acids

22.87

Weight (kDa)

5.32

Isoelectric Point (pI)

33.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21720 AT1G77440 AT1G77440
fragaria_vesca	FvH4_2g27460
malus_domestica	MD00G1028400.v1.1 MD15G1344700.v1.1
prunus_persica	Prupe.1G492900_v2.0.a1
pyrus_communis	pycom08g13680 pycom15g30930
rosa_chinensis	RchiOBHm_Chr2g0103031 RchiOBHm_Chr2g0140351 RchiOBHm_Chr4g0425031 RchiOBHm_Chr5g0069521 RchiOBHm_Chr6g0296301
rosa_laevigata	RLG00000003407 RLG00000011708 RLG00000019374
rosa_multiflora	Rmu_co8088830.1_g000001 Rmu_sc0000388.1_g000016 Rmu_sc0004708.1_g000006 Rmu_sc0022551.1_g000001
rosa_roxburghii	Rroxscaffold_2G00139980 Rroxscaffold_7G00171650 Rroxscaffold_7G00178420
rosa_rugosa	Rorug02G0111500 Rorug04G0057000 Rorug05G0263600 Rorug06G0260800
rosa_samantha	Rh1BG051400 Rh2CG166500 Rh6BG194900 Rh6BG380500 Rh6DG172500 Rh7DG016200
rosa_wichuraiana	Rw2G012490 Rw4G002730 Rw6G032480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	78
AciI	CCGC	1 cut(s)	276
AcuI	CTGAAG	1 cut(s)	597
AcyI	GRCGYC	1 cut(s)	79
AfaI	GTAC	3 cut(s)	17, 221, 418
AfiI	CCNNNNNNNGG	2 cut(s)	75, 229
AgsI	TTSAA	4 cut(s)	118, 375, 460, 598
AjiI	CACGTC	1 cut(s)	556
AluBI	AGCT	3 cut(s)	94, 217, 226
AluI	AGCT	3 cut(s)	94, 217, 226
Alw21I	GWGCWC	1 cut(s)	31
Alw26I	GTCTC	5 cut(s)	161, 248, 277, 502, 522
Alw44I	GTGCAC	1 cut(s)	27
AlwNI	CAGNNNCTG	1 cut(s)	187
Ama87I	CYCGRG	1 cut(s)	251
AoxI	GGCC	4 cut(s)	163, 301, 381, 550
ApaLI	GTGCAC	1 cut(s)	27
Asp700I	GAANNNNTTC	1 cut(s)	56
AspLEI	GCGC	1 cut(s)	81
AspS9I	GGNCC	2 cut(s)	302, 381
AvaI	CYCGRG	1 cut(s)	251
BaeGI	GKGCMC	1 cut(s)	31
BanI	GGYRCC	1 cut(s)	78
BbsI	GAAGAC	1 cut(s)	351
Bbv12I	GWGCWC	1 cut(s)	31
BcgI	CGANNNNNNTGC	2 cut(s)	242, 276
BcoDI	GTCTC	5 cut(s)	161, 248, 277, 502, 522
BfaI	CTAG	1 cut(s)	392
BfoI	RGCGCY	1 cut(s)	82
BmeT110I	CYCGRG	1 cut(s)	251
BmgBI	CACGTC	1 cut(s)	556
BmgT120I	GGNCC	2 cut(s)	302, 381
BmiI	GGNNCC	2 cut(s)	80, 382
BmsI	GCATC	2 cut(s)	166, 431
BpiI	GAAGAC	1 cut(s)	351
BplI	GAGNNNNNCTC	2 cut(s)	482, 514
BpmI	CTGGAG	1 cut(s)	80
Bpu10I	CCTNAGC	1 cut(s)	227
BpuEI	CTTGAG	1 cut(s)	486
BsaHI	GRCGYC	1 cut(s)	79
BsaI	GGTCTC	1 cut(s)	161
BsaJI	CCNNGG	3 cut(s)	82, 366, 384
BsaXI	ACNNNNNCTCC	2 cut(s)	540, 570
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 229
Bse3DI	GCAATG	3 cut(s)	45, 459, 506
BseDI	CCNNGG	3 cut(s)	82, 366, 384
BseLI	CCNNNNNNNGG	2 cut(s)	75, 229
BseMI	GCAATG	3 cut(s)	45, 459, 506
BseMII	CTCAG	2 cut(s)	194, 527
BseRI	GAGGAG	2 cut(s)	248, 494
BseSI	GKGCMC	1 cut(s)	31
BseYI	CCCAGC	1 cut(s)	329
BsgI	GTGCAG	1 cut(s)	346
Bsh1285I	CGRYCG	1 cut(s)	76
BshFI	GGCC	4 cut(s)	165, 303, 383, 552
BshNI	GGYRCC	1 cut(s)	78
BsiEI	CGRYCG	1 cut(s)	76
BsiHKAI	GWGCWC	1 cut(s)	31
BsiHKCI	CYCGRG	1 cut(s)	251
BslFI	GGGAC	1 cut(s)	415
BslI	CCNNNNNNNGG	2 cut(s)	75, 229
BsmAI	GTCTC	5 cut(s)	161, 248, 277, 502, 522
BsmBI	CGTCTC	1 cut(s)	277
BsmFI	GGGAC	1 cut(s)	415
BsnI	GGCC	4 cut(s)	165, 303, 383, 552
Bso31I	GGTCTC	1 cut(s)	161
BsoBI	CYCGRG	1 cut(s)	251
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	4 cut(s)	6, 33, 73, 523
Bsp19I	CCATGG	1 cut(s)	366
BspACI	CCGC	1 cut(s)	276
BspANI	GGCC	4 cut(s)	165, 303, 383, 552
BspCNI	CTCAG	2 cut(s)	193, 528
BspLI	GGNNCC	2 cut(s)	80, 382
BspQI	GCTCTTC	1 cut(s)	152
BspT107I	GGYRCC	1 cut(s)	78
BspTNI	GGTCTC	1 cut(s)	161
BsrDI	GCAATG	3 cut(s)	45, 459, 506
BssECI	CCNNGG	3 cut(s)	82, 366, 384
BssMI	GATC	4 cut(s)	6, 33, 73, 523
BssNI	GRCGYC	1 cut(s)	79
BssT1I	CCWWGG	3 cut(s)	82, 366, 384
Bst4CI	ACNGT	2 cut(s)	103, 533
Bst6I	CTCTTC	1 cut(s)	152
BstACI	GRCGYC	1 cut(s)	79
BstAPI	GCANNNNNTGC	1 cut(s)	54
BstC8I	GCNNGC	2 cut(s)	70, 265
BstDEI	CTNAG	3 cut(s)	180, 227, 536
BstDSI	CCRYGG	1 cut(s)	366
BstH2I	RGCGCY	1 cut(s)	82
BstHHI	GCGC	1 cut(s)	81
BstKTI	GATC	4 cut(s)	9, 36, 76, 526
BstMAI	GTCTC	5 cut(s)	161, 248, 277, 502, 522
BstMBI	GATC	4 cut(s)	6, 33, 73, 523
BstMCI	CGRYCG	1 cut(s)	76
BstMWI	GCNNNNNNNGC	7 cut(s)	35, 54, 78, 176, 223, 419, 449
BstSLI	GKGCMC	1 cut(s)	31
BstV2I	GAAGAC	1 cut(s)	351
BsuRI	GGCC	4 cut(s)	165, 303, 383, 552
BtgI	CCRYGG	1 cut(s)	366
BtrI	CACGTC	1 cut(s)	556
BtsIMutI	CAGTG	1 cut(s)	29
Cac8I	GCNNGC	2 cut(s)	70, 265
CaiI	CAGNNNCTG	1 cut(s)	187
CfoI	GCGC	1 cut(s)	81
Cfr13I	GGNCC	2 cut(s)	302, 381
Csp6I	GTAC	3 cut(s)	16, 220, 417
CviAII	CATG	1 cut(s)	367
CviQI	GTAC	3 cut(s)	16, 220, 417
DdeI	CTNAG	3 cut(s)	180, 227, 536
DinI	GGCGCC	1 cut(s)	80
DpnI	GATC	4 cut(s)	8, 35, 75, 525
DpnII	GATC	4 cut(s)	6, 33, 73, 523
Eam1104I	CTCTTC	1 cut(s)	152
EarI	CTCTTC	1 cut(s)	152
Eco130I	CCWWGG	3 cut(s)	82, 366, 384
Eco31I	GGTCTC	1 cut(s)	161
Eco57I	CTGAAG	1 cut(s)	597
Eco88I	CYCGRG	1 cut(s)	251
EcoT14I	CCWWGG	3 cut(s)	82, 366, 384
EgeI	GGCGCC	1 cut(s)	80
EheI	GGCGCC	1 cut(s)	80
ErhI	CCWWGG	3 cut(s)	82, 366, 384
Esp3I	CGTCTC	1 cut(s)	277
FaeI	CATG	1 cut(s)	370
FaiI	YATR	8 cut(s)	65, 203, 245, 288, 307, 368, 438, 470
FalI	AAGNNNNNCTT	4 cut(s)	41, 73, 495, 527
FaqI	GGGAC	1 cut(s)	415
FatI	CATG	1 cut(s)	366
FspBI	CTAG	1 cut(s)	392
GlaI	GCGC	1 cut(s)	80
GsaI	CCCAGC	1 cut(s)	333
GsuI	CTGGAG	1 cut(s)	80
HaeII	RGCGCY	1 cut(s)	82
HaeIII	GGCC	4 cut(s)	165, 303, 383, 552
HhaI	GCGC	1 cut(s)	81
Hin1I	GRCGYC	1 cut(s)	79
Hin1II	CATG	1 cut(s)	370
Hin6I	GCGC	1 cut(s)	79
HinP1I	GCGC	1 cut(s)	79
HinfI	GANTC	5 cut(s)	123, 184, 371, 428, 591
Hpy166II	GTNNAC	2 cut(s)	29, 136
Hpy188I	TCNGA	4 cut(s)	183, 195, 427, 537
Hpy188III	TCNNGA	4 cut(s)	97, 118, 527, 595
Hpy8I	GTNNAC	2 cut(s)	29, 136
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	2 cut(s)	577, 592
HpyCH4III	ACNGT	2 cut(s)	103, 533
HpyCH4IV	ACGT	1 cut(s)	555
HpyCH4V	TGCA	3 cut(s)	29, 363, 422
HpyF10VI	GCNNNNNNNGC	7 cut(s)	35, 54, 78, 176, 223, 419, 449
HpyF3I	CTNAG	3 cut(s)	180, 227, 536
HpySE526I	ACGT	1 cut(s)	555
Hsp92I	GRCGYC	1 cut(s)	79
Hsp92II	CATG	1 cut(s)	370
HspAI	GCGC	1 cut(s)	79
KasI	GGCGCC	1 cut(s)	78
Kzo9I	GATC	4 cut(s)	6, 33, 73, 523
LguI	GCTCTTC	1 cut(s)	152
LmnI	GCTCC	1 cut(s)	99
LpnPI	CCDG	9 cut(s)	82, 110, 147, 236, 277, 315, 333, 399, 477
LweI	GCATC	2 cut(s)	166, 431
MaeI	CTAG	1 cut(s)	392
MaeII	ACGT	1 cut(s)	555
MaeIII	GTNAC	1 cut(s)	565
MalI	GATC	4 cut(s)	8, 35, 75, 525
MboI	GATC	4 cut(s)	6, 33, 73, 523
MboII	GAAGA	3 cut(s)	139, 356, 615
MfeI	CAATTG	1 cut(s)	375
MhlI	GDGCHC	1 cut(s)	31
MluCI	AATT	2 cut(s)	324, 375
Mly113I	GGCGCC	1 cut(s)	79
MlyI	GAGTC	2 cut(s)	178, 437
MnlI	CCTC	8 cut(s)	176, 189, 226, 231, 278, 442, 472, 542
MroXI	GAANNNNTTC	1 cut(s)	56
MseI	TTAA	1 cut(s)	335
MunI	CAATTG	1 cut(s)	375
MwoI	GCNNNNNNNGC	7 cut(s)	35, 54, 78, 176, 223, 419, 449
NarI	GGCGCC	1 cut(s)	79
NcoI	CCATGG	1 cut(s)	366
NdeII	GATC	4 cut(s)	6, 33, 73, 523
NlaIII	CATG	1 cut(s)	370
NlaIV	GGNNCC	2 cut(s)	80, 382
PciSI	GCTCTTC	1 cut(s)	152
PdmI	GAANNNNTTC	1 cut(s)	56
PfeI	GAWTC	3 cut(s)	123, 371, 591
Ple19I	CGATCG	1 cut(s)	76
PleI	GAGTC	2 cut(s)	178, 436
PluTI	GGCGCC	1 cut(s)	82
PpsI	GAGTC	2 cut(s)	178, 436
PspFI	CCCAGC	1 cut(s)	329
PspN4I	GGNNCC	2 cut(s)	80, 382
PspPI	GGNCC	2 cut(s)	302, 381
PstNI	CAGNNNCTG	1 cut(s)	187
PvuI	CGATCG	1 cut(s)	76
RsaI	GTAC	3 cut(s)	17, 221, 418
RsaNI	GTAC	3 cut(s)	16, 220, 417
SapI	GCTCTTC	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	335
Sau3AI	GATC	4 cut(s)	6, 33, 73, 523
Sau96I	GGNCC	2 cut(s)	302, 381
SchI	GAGTC	2 cut(s)	178, 437
SduI	GDGCHC	1 cut(s)	31
SetI	ASST	5 cut(s)	96, 219, 228, 299, 558
SfaNI	GCATC	2 cut(s)	166, 431
SfoI	GGCGCC	1 cut(s)	80
SmlI	CTYRAG	1 cut(s)	501
SmoI	CTYRAG	1 cut(s)	501
Sse9I	AATT	2 cut(s)	324, 375
SsiI	CCGC	1 cut(s)	276
SspDI	GGCGCC	1 cut(s)	78
SspMI	CTAG	1 cut(s)	392
StyI	CCWWGG	3 cut(s)	82, 366, 384
TaaI	ACNGT	2 cut(s)	103, 533
TaiI	ACGT	1 cut(s)	558
TaqI	TCGA	3 cut(s)	5, 12, 526
TaqII	GACCGA	1 cut(s)	143
TasI	AATT	2 cut(s)	324, 375
TatI	WGTACW	1 cut(s)	15
TfiI	GAWTC	3 cut(s)	123, 371, 591
Tru1I	TTAA	1 cut(s)	335
Tru9I	TTAA	1 cut(s)	335
TscAI	CASTG	1 cut(s)	36
TspDTI	ATGAA	5 cut(s)	139, 260, 346, 357, 504
TspRI	CASTG	1 cut(s)	36
VneI	GTGCAC	1 cut(s)	27
XmnI	GAANNNNTTC	1 cut(s)	56
XspI	CTAG	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.