Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003233

Physical Location & Seq

Genomic Coordinates Forward (+)

36610335 .. 36613609

Gene Structure 3275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG194900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGTCGGCGATAAAGATCAATAGTTCAAATTCGTGCCCTTCAACTCCTTGTTGGATCTCCGAGAGGCCGTTCCTCACTGACCGCTTCCATCAGGTTCCTCCTCCTCATCTTCTCTTTACTCTTTACTTTAACCCCCTCCTCCTTTACTTTCCATTTGAAATTTCCGGCAGAAAACCAAATGGACGTCGCGTTTCGCCACCAATACCAAGGATTCCTATACTGTGGGATTCCAAGATTCCATTGGCTGTTCTAATGCTGCTGTTCAGGAACTGGTGGAGGTTTCAGAGGCTTATGTTTAAGCACAAGTTGTACCAGTTAAGGGAAGAGAGGGATATGAAGCCTGAGACTTTTGCTAGCCTCGTCTCAGCTATTATCTATTATCTACGAGAAAAGGCTAAGGCCATGGCTGGTGATACTGCTGTAAGGTCATTGCTAGAAAAGATGGCTGAATGTGCTAGCAATGCGTACCTGGGAAAGCCTCAAGATTATGAAGCCAAGTATTGGAGGCAACGTTACAGCCTTAAGGATGGAAGTCCTAGCTTTCTTGCAAATATTGCTGGGACAATTTTAATCACAGGAAAATATCTAAATGTCATGAGAGAATGCGAGCAACATGTTCAGGTCCCTATATCTGAAAATTCGAAATTGATGAGCTTTGGATCAAATCATCGTTATATTGAGTGTATAAAATCTGCTTATGACTTTGCTAGCAGCGAGCTTTTAAATCTTATCAAAGAAAAAGCTTCTCCGGTGCAAAGTACGTTGGAAGATATTCAAGAATTTTTTGACAATATGAAAACAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000278 GO:0000280 GO:0000923 GO:0000930 GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0007051 GO:0007052 GO:0007098 GO:0008092 GO:0008150 GO:0008275 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0031023 GO:0031109 GO:0031122 GO:0031974 GO:0031981 GO:0032153 GO:0032155 GO:0032991 GO:0034622 GO:0043015 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0046785 GO:0048285 GO:0051225 GO:0051258 GO:0051298 GO:0051321 GO:0051415 GO:0051418 GO:0065003 GO:0070013 GO:0070925 GO:0071840 GO:0090307 GO:0097435 GO:0140014 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spc97_Spc98

Protein Analysis

268

Amino Acids

31.15

Weight (kDa)

9.27

Isoelectric Point (pI)

53.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCP_N_terminal	PF17681	160 - 247	7.1e-16	Gamma tubulin complex component N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21720 AT1G77440 AT1G77440
fragaria_vesca	FvH4_2g27460
malus_domestica	MD00G1028400.v1.1 MD15G1344700.v1.1
prunus_persica	Prupe.1G492900_v2.0.a1
pyrus_communis	pycom08g13680 pycom15g30930
rosa_chinensis	RchiOBHm_Chr2g0103031 RchiOBHm_Chr2g0140351 RchiOBHm_Chr4g0425031 RchiOBHm_Chr5g0069521 RchiOBHm_Chr6g0296301
rosa_laevigata	RLG00000003407 RLG00000011708 RLG00000019374
rosa_multiflora	Rmu_co8088830.1_g000001 Rmu_sc0000388.1_g000016 Rmu_sc0004708.1_g000006 Rmu_sc0022551.1_g000001
rosa_roxburghii	Rroxscaffold_2G00139980 Rroxscaffold_7G00171650 Rroxscaffold_7G00178420
rosa_rugosa	Rorug02G0111500 Rorug04G0057000 Rorug05G0263600 Rorug06G0260800
rosa_samantha	Rh1BG051400 Rh2CG166500 Rh6BG194900 Rh6BG380500 Rh6DG172500 Rh7DG016200
rosa_wichuraiana	Rw2G012490 Rw4G002730 Rw6G032480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	187
AccB7I	CCANNNNNTGG	1 cut(s)	501
AccII	CGCG	1 cut(s)	189
AciI	CCGC	1 cut(s)	82
AclI	AACGTT	1 cut(s)	511
AclWI	GGATC	2 cut(s)	62, 667
AcsI	RAATTY	4 cut(s)	28, 159, 637, 779
AcyI	GRCGYC	1 cut(s)	184
AfaI	GTAC	3 cut(s)	311, 467, 760
AfiI	CCNNNNNNNGG	2 cut(s)	319, 501
AflII	CTTAAG	1 cut(s)	521
AflIII	ACRYGT	1 cut(s)	613
AgsI	TTSAA	4 cut(s)	27, 42, 158, 776
AjnI	CCWGG	1 cut(s)	468
AluBI	AGCT	5 cut(s)	368, 540, 654, 718, 743
AluI	AGCT	5 cut(s)	368, 540, 654, 718, 743
Alw26I	GTCTC	2 cut(s)	338, 367
AlwI	GGATC	2 cut(s)	62, 667
AlwNI	CAGNNNCTG	1 cut(s)	270
AoxI	GGCC	2 cut(s)	65, 399
ApeKI	GCWGC	2 cut(s)	256, 711
ApoI	RAATTY	4 cut(s)	28, 159, 637, 779
Asp700I	GAANNNNTTC	1 cut(s)	771
AspS9I	GGNCC	1 cut(s)	622
AsuHPI	GGTGA	1 cut(s)	422
AsuII	TTCGAA	1 cut(s)	641
AsuNHI	GCTAGC	3 cut(s)	353, 455, 707
AvaII	GGWCC	1 cut(s)	622
BaeGI	GKGCMC	1 cut(s)	38
BaeI	ACNNNNGTAYC	2 cut(s)	405, 438
BbvI	GCAGC	2 cut(s)	243, 723
BccI	CCATC	3 cut(s)	96, 436, 521
BceAI	ACGGC	1 cut(s)	52
BciT130I	CCWGG	1 cut(s)	470
BcoDI	GTCTC	2 cut(s)	338, 367
BfaI	CTAG	5 cut(s)	354, 434, 456, 537, 708
BfrI	CTTAAG	1 cut(s)	521
BisI	GCNGC	2 cut(s)	257, 712
BlsI	GCNGC	2 cut(s)	258, 713
Bme1390I	CCNGG	1 cut(s)	470
Bme18I	GGWCC	1 cut(s)	622
BmgT120I	GGNCC	1 cut(s)	622
BmiI	GGNNCC	2 cut(s)	96, 624
BmrFI	CCNGG	1 cut(s)	470
BmtI	GCTAGC	3 cut(s)	357, 459, 711
Bpu10I	CCTNAGC	1 cut(s)	396
Bpu14I	TTCGAA	1 cut(s)	641
BpuEI	CTTGAG	1 cut(s)	465
BsaBI	GATNNNNATC	1 cut(s)	14
BsaHI	GRCGYC	1 cut(s)	184
BsaJI	CCNNGG	3 cut(s)	206, 402, 469
BsaWI	WCCGGW	1 cut(s)	748
BsaXI	ACNNNNNCTCC	2 cut(s)	496, 526
Bsc4I	CCNNNNNNNGG	2 cut(s)	319, 501
Bse1I	ACTGG	2 cut(s)	275, 313
Bse3DI	GCAATG	2 cut(s)	428, 466
Bse8I	GATNNNNATC	1 cut(s)	14
BseBI	CCWGG	1 cut(s)	470
BseDI	CCNNGG	3 cut(s)	206, 402, 469
BseGI	GGATG	1 cut(s)	532
BseJI	GATNNNNATC	1 cut(s)	14
BseLI	CCNNNNNNNGG	2 cut(s)	319, 501
BseMI	GCAATG	2 cut(s)	428, 466
BseMII	CTCAG	2 cut(s)	333, 378
BseNI	ACTGG	2 cut(s)	275, 313
BseRI	GAGGAG	3 cut(s)	90, 93, 128
BseSI	GKGCMC	1 cut(s)	38
BseXI	GCAGC	2 cut(s)	243, 723
BseYI	CCCAGC	1 cut(s)	557
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	2 cut(s)	67, 401
BsiSI	CCGG	2 cut(s)	165, 749
BslFI	GGGAC	2 cut(s)	574, 608
BslI	CCNNNNNNNGG	2 cut(s)	319, 501
BsmAI	GTCTC	2 cut(s)	338, 367
BsmBI	CGTCTC	1 cut(s)	367
BsmFI	GGGAC	2 cut(s)	574, 608
BsmI	GAATGC	1 cut(s)	608
BsnI	GGCC	2 cut(s)	67, 401
Bsp119I	TTCGAA	1 cut(s)	641
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	3 cut(s)	15, 54, 659
Bsp19I	CCATGG	1 cut(s)	402
BspACI	CCGC	1 cut(s)	82
BspANI	GGCC	2 cut(s)	67, 401
BspCNI	CTCAG	2 cut(s)	334, 377
BspFNI	CGCG	1 cut(s)	189
BspHI	TCATGA	1 cut(s)	594
BspLI	GGNNCC	2 cut(s)	96, 624
BspOI	GCTAGC	3 cut(s)	357, 459, 711
BspPI	GGATC	2 cut(s)	62, 667
BspT104I	TTCGAA	1 cut(s)	641
BspTI	CTTAAG	1 cut(s)	521
BsrDI	GCAATG	2 cut(s)	428, 466
BsrI	ACTGG	2 cut(s)	275, 313
BssECI	CCNNGG	3 cut(s)	206, 402, 469
BssMI	GATC	3 cut(s)	15, 54, 659
BssNI	GRCGYC	1 cut(s)	184
BssT1I	CCWWGG	2 cut(s)	206, 402
Bst2UI	CCWGG	1 cut(s)	470
Bst4CI	ACNGT	1 cut(s)	222
Bst6I	CTCTTC	1 cut(s)	318
BstACI	GRCGYC	1 cut(s)	184
BstAFI	CTTAAG	1 cut(s)	521
BstAPI	GCANNNNNTGC	1 cut(s)	554
BstBI	TTCGAA	1 cut(s)	641
BstC8I	GCNNGC	5 cut(s)	355, 457, 608, 709, 716
BstDEI	CTNAG	3 cut(s)	342, 364, 396
BstDSI	CCRYGG	1 cut(s)	402
BstF5I	GGATG	1 cut(s)	532
BstFNI	CGCG	1 cut(s)	189
BstKTI	GATC	3 cut(s)	18, 57, 662
BstMAI	GTCTC	2 cut(s)	338, 367
BstMBI	GATC	3 cut(s)	15, 54, 659
BstMWI	GCNNNNNNNGC	3 cut(s)	452, 461, 554
BstNI	CCWGG	1 cut(s)	470
BstNSI	RCATGY	1 cut(s)	617
BstSCI	CCNGG	1 cut(s)	468
BstSLI	GKGCMC	1 cut(s)	38
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	2 cut(s)	243, 723
BstX2I	RGATCY	1 cut(s)	54
BstYI	RGATCY	1 cut(s)	54
BsuRI	GGCC	2 cut(s)	67, 401
BtgI	CCRYGG	1 cut(s)	402
BtsCI	GGATG	1 cut(s)	532
BtsIMutI	CAGTG	1 cut(s)	75
Cac8I	GCNNGC	5 cut(s)	355, 457, 608, 709, 716
CaiI	CAGNNNCTG	1 cut(s)	270
CciI	TCATGA	1 cut(s)	594
Cfr13I	GGNCC	1 cut(s)	622
Csp6I	GTAC	3 cut(s)	310, 466, 759
CviAII	CATG	3 cut(s)	403, 595, 614
CviQI	GTAC	3 cut(s)	310, 466, 759
DdeI	CTNAG	3 cut(s)	342, 364, 396
DpnI	GATC	3 cut(s)	17, 56, 661
DpnII	GATC	3 cut(s)	15, 54, 659
DraI	TTTAAA	1 cut(s)	723
Eam1104I	CTCTTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	318
Eco130I	CCWWGG	2 cut(s)	206, 402
Eco47I	GGWCC	1 cut(s)	622
EcoO109I	RGGNCCY	1 cut(s)	622
EcoRII	CCWGG	1 cut(s)	468
EcoT14I	CCWWGG	2 cut(s)	206, 402
ErhI	CCWWGG	2 cut(s)	206, 402
Esp3I	CGTCTC	1 cut(s)	367
FaeI	CATG	3 cut(s)	406, 598, 617
FaqI	GGGAC	2 cut(s)	574, 608
FatI	CATG	3 cut(s)	402, 594, 613
Fnu4HI	GCNGC	2 cut(s)	257, 712
FokI	GGATG	1 cut(s)	539
Fsp4HI	GCNGC	2 cut(s)	257, 712
FspBI	CTAG	5 cut(s)	354, 434, 456, 537, 708
GluI	GCNGC	2 cut(s)	257, 712
GsaI	CCCAGC	1 cut(s)	561
HaeIII	GGCC	2 cut(s)	67, 401
HapII	CCGG	2 cut(s)	165, 749
Hin1I	GRCGYC	1 cut(s)	184
Hin1II	CATG	3 cut(s)	406, 598, 617
HindIII	AAGCTT	1 cut(s)	741
HinfI	GANTC	3 cut(s)	211, 227, 235
HpaII	CCGG	2 cut(s)	165, 749
HphI	GGTGA	1 cut(s)	422
Hpy188I	TCNGA	3 cut(s)	61, 285, 634
Hpy188III	TCNNGA	4 cut(s)	265, 482, 595, 776
Hpy99I	CGWCG	1 cut(s)	189
HpyAV	CCTTC	1 cut(s)	48
HpyCH4III	ACNGT	1 cut(s)	222
HpyCH4IV	ACGT	3 cut(s)	184, 511, 761
HpyCH4V	TGCA	2 cut(s)	548, 754
HpyF10VI	GCNNNNNNNGC	3 cut(s)	452, 461, 554
HpyF3I	CTNAG	3 cut(s)	342, 364, 396
HpySE526I	ACGT	3 cut(s)	184, 511, 761
Hsp92I	GRCGYC	1 cut(s)	184
Hsp92II	CATG	3 cut(s)	406, 598, 617
Kzo9I	GATC	3 cut(s)	15, 54, 659
Lsp1109I	GCAGC	2 cut(s)	243, 723
MaeI	CTAG	5 cut(s)	354, 434, 456, 537, 708
MaeII	ACGT	3 cut(s)	184, 511, 761
MaeIII	GTNAC	1 cut(s)	512
MalI	GATC	3 cut(s)	17, 56, 661
MboI	GATC	3 cut(s)	15, 54, 659
MboII	GAAGA	3 cut(s)	101, 335, 779
MflI	RGATCY	1 cut(s)	54
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	6 cut(s)	28, 159, 564, 637, 644, 779
MmeI	TCCRAC	2 cut(s)	32, 744
MroXI	GAANNNNTTC	1 cut(s)	771
MseI	TTAA	6 cut(s)	129, 297, 317, 522, 569, 722
MspCI	CTTAAG	1 cut(s)	521
MspI	CCGG	2 cut(s)	165, 749
MspR9I	CCNGG	1 cut(s)	470
Mva1269I	GAATGC	1 cut(s)	608
MvaI	CCWGG	1 cut(s)	470
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	3 cut(s)	452, 461, 554
NcoI	CCATGG	1 cut(s)	402
NdeII	GATC	3 cut(s)	15, 54, 659
NheI	GCTAGC	3 cut(s)	353, 455, 707
NlaIII	CATG	3 cut(s)	406, 598, 617
NlaIV	GGNNCC	2 cut(s)	96, 624
NspI	RCATGY	1 cut(s)	617
NspV	TTCGAA	1 cut(s)	641
PagI	TCATGA	1 cut(s)	594
PciI	ACATGT	1 cut(s)	613
PctI	GAATGC	1 cut(s)	608
PdmI	GAANNNNTTC	1 cut(s)	771
PfeI	GAWTC	3 cut(s)	211, 227, 235
PflMI	CCANNNNNTGG	1 cut(s)	501
PkrI	GCNGC	2 cut(s)	258, 713
PpuMI	RGGWCCY	1 cut(s)	622
PscI	ACATGT	1 cut(s)	613
Psp1406I	AACGTT	1 cut(s)	511
Psp5II	RGGWCCY	1 cut(s)	622
Psp6I	CCWGG	1 cut(s)	468
PspFI	CCCAGC	1 cut(s)	557
PspGI	CCWGG	1 cut(s)	468
PspN4I	GGNNCC	2 cut(s)	96, 624
PspPI	GGNCC	1 cut(s)	622
PspPPI	RGGWCCY	1 cut(s)	622
PstNI	CAGNNNCTG	1 cut(s)	270
PsuI	RGATCY	1 cut(s)	54
RsaI	GTAC	3 cut(s)	311, 467, 760
RsaNI	GTAC	3 cut(s)	310, 466, 759
SaqAI	TTAA	6 cut(s)	129, 297, 317, 522, 569, 722
SatI	GCNGC	2 cut(s)	257, 712
Sau3AI	GATC	3 cut(s)	15, 54, 659
Sau96I	GGNCC	1 cut(s)	622
ScrFI	CCNGG	1 cut(s)	470
SduI	GDGCHC	1 cut(s)	38
SfuI	TTCGAA	1 cut(s)	641
SinI	GGWCC	1 cut(s)	622
SmlI	CTYRAG	2 cut(s)	480, 521
SmoI	CTYRAG	2 cut(s)	480, 521
Sse9I	AATT	6 cut(s)	28, 159, 564, 637, 644, 779
SsiI	CCGC	1 cut(s)	82
SspI	AATATT	1 cut(s)	553
SspMI	CTAG	5 cut(s)	354, 434, 456, 537, 708
StyD4I	CCNGG	1 cut(s)	468
StyI	CCWWGG	2 cut(s)	206, 402
TaaI	ACNGT	1 cut(s)	222
TaiI	ACGT	3 cut(s)	187, 514, 764
TaqI	TCGA	1 cut(s)	641
TasI	AATT	6 cut(s)	28, 159, 564, 637, 644, 779
TfiI	GAWTC	3 cut(s)	211, 227, 235
Tru1I	TTAA	6 cut(s)	129, 297, 317, 522, 569, 722
Tru9I	TTAA	6 cut(s)	129, 297, 317, 522, 569, 722
TscAI	CASTG	1 cut(s)	82
TseI	GCWGC	2 cut(s)	256, 711
TspDTI	ATGAA	2 cut(s)	350, 504
TspRI	CASTG	1 cut(s)	82
Van91I	CCANNNNNTGG	1 cut(s)	501
Vha464I	CTTAAG	1 cut(s)	521
VpaK11BI	GGWCC	1 cut(s)	622
XapI	RAATTY	4 cut(s)	28, 159, 637, 779
XceI	RCATGY	1 cut(s)	617
XcmI	CCANNNNNNNNNTGG	1 cut(s)	238
XmnI	GAANNNNTTC	1 cut(s)	771
XspI	CTAG	5 cut(s)	354, 434, 456, 537, 708
ZraI	GACGTC	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.