Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8088830.1

Orthogroup ID

OG0003233

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 579

Gene Structure 579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8088830.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ctgcaaaaggaaagcctcactcaagattatgatgccaagtattggaggcaacgttacagccttaaggatggaattcctagctttcttgcaaatattgctggaacaattttgatcaccggaaagtatctaaatgtcatgagagaatgcgggcaccatgttcaggtccctgtatctgaaaattcaaaattgatgagctttggatcaaatcatcgttatatcgaatgtataaaatctgcttatgactttgcaagcagcgagctcttaaatcttatcaaagaaaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000278 GO:0000280 GO:0000923 GO:0000930 GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0007051 GO:0007052 GO:0007098 GO:0008092 GO:0008150 GO:0008275 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0031023 GO:0031109 GO:0031122 GO:0031974 GO:0031981 GO:0032153 GO:0032155 GO:0032991 GO:0034622 GO:0043015 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0046785 GO:0048285 GO:0051225 GO:0051258 GO:0051298 GO:0051321 GO:0051415 GO:0051418 GO:0065003 GO:0070013 GO:0070925 GO:0071840 GO:0090307 GO:0097435 GO:0140014 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spc97_Spc98

Protein Analysis

94

Amino Acids

10.8

Weight (kDa)

8.59

Isoelectric Point (pI)

48.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21720 AT1G77440 AT1G77440
fragaria_vesca	FvH4_2g27460
malus_domestica	MD00G1028400.v1.1 MD15G1344700.v1.1
prunus_persica	Prupe.1G492900_v2.0.a1
pyrus_communis	pycom08g13680 pycom15g30930
rosa_chinensis	RchiOBHm_Chr2g0103031 RchiOBHm_Chr2g0140351 RchiOBHm_Chr4g0425031 RchiOBHm_Chr5g0069521 RchiOBHm_Chr6g0296301
rosa_laevigata	RLG00000003407 RLG00000011708 RLG00000019374
rosa_multiflora	Rmu_co8088830.1_g000001 Rmu_sc0000388.1_g000016 Rmu_sc0004708.1_g000006 Rmu_sc0022551.1_g000001
rosa_roxburghii	Rroxscaffold_2G00139980 Rroxscaffold_7G00171650 Rroxscaffold_7G00178420
rosa_rugosa	Rorug02G0111500 Rorug04G0057000 Rorug05G0263600 Rorug06G0260800
rosa_samantha	Rh1BG051400 Rh2CG166500 Rh6BG194900 Rh6BG380500 Rh6DG172500 Rh7DG016200
rosa_wichuraiana	Rw2G012490 Rw4G002730 Rw6G032480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	150
AccB7I	CCANNNNNTGG	1 cut(s)	42
AciI	CCGC	1 cut(s)	147
AclI	AACGTT	1 cut(s)	52
AclWI	GGATC	1 cut(s)	208
AcsI	RAATTY	2 cut(s)	72, 178
AfiI	CCNNNNNNNGG	2 cut(s)	42, 160
AflII	CTTAAG	1 cut(s)	62
AgsI	TTSAA	1 cut(s)	183
AluBI	AGCT	3 cut(s)	81, 195, 259
AluI	AGCT	3 cut(s)	81, 195, 259
Alw21I	GWGCWC	1 cut(s)	261
AlwI	GGATC	1 cut(s)	208
ApeKI	GCWGC	1 cut(s)	252
ApoI	RAATTY	2 cut(s)	72, 178
AspS9I	GGNCC	1 cut(s)	163
AsuHPI	GGTGA	1 cut(s)	106
AvaII	GGWCC	1 cut(s)	163
BaeGI	GKGCMC	1 cut(s)	153
BanI	GGYRCC	1 cut(s)	150
BanII	GRGCYC	1 cut(s)	261
Bbv12I	GWGCWC	1 cut(s)	261
BbvI	GCAGC	1 cut(s)	264
BccI	CCATC	1 cut(s)	62
BclI	TGATCA	1 cut(s)	111
BfaI	CTAG	1 cut(s)	78
BfrI	CTTAAG	1 cut(s)	62
BisI	GCNGC	1 cut(s)	253
BlsI	GCNGC	1 cut(s)	254
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	2 cut(s)	152, 165
BmsI	GCATC	1 cut(s)	22
BpuEI	CTTGAG	1 cut(s)	6
BsaWI	WCCGGW	1 cut(s)	116
BsaXI	ACNNNNNCTCC	2 cut(s)	37, 67
Bsc4I	CCNNNNNNNGG	2 cut(s)	42, 160
BseGI	GGATG	1 cut(s)	73
BseLI	CCNNNNNNNGG	2 cut(s)	42, 160
BseSI	GKGCMC	1 cut(s)	153
BseXI	GCAGC	1 cut(s)	264
BshNI	GGYRCC	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	117
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	2 cut(s)	42, 160
BsmFI	GGGAC	1 cut(s)	149
BsmI	GAATGC	1 cut(s)	149
Bsp1286I	GDGCHC	2 cut(s)	153, 261
Bsp143I	GATC	2 cut(s)	111, 200
BspACI	CCGC	1 cut(s)	147
BspHI	TCATGA	1 cut(s)	135
BspLI	GGNNCC	2 cut(s)	152, 165
BspPI	GGATC	1 cut(s)	208
BspT107I	GGYRCC	1 cut(s)	150
BspTI	CTTAAG	1 cut(s)	62
BssMI	GATC	2 cut(s)	111, 200
BstAFI	CTTAAG	1 cut(s)	62
BstAPI	GCANNNNNTGC	1 cut(s)	95
BstC8I	GCNNGC	3 cut(s)	149, 250, 257
BstF5I	GGATG	1 cut(s)	73
BstKTI	GATC	2 cut(s)	114, 203
BstMBI	GATC	2 cut(s)	111, 200
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstSLI	GKGCMC	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	264
BtsCI	GGATG	1 cut(s)	73
Cac8I	GCNNGC	3 cut(s)	149, 250, 257
CciI	TCATGA	1 cut(s)	135
Cfr13I	GGNCC	1 cut(s)	163
CviAII	CATG	2 cut(s)	136, 155
CviJI	RGCY	5 cut(s)	15, 60, 81, 195, 259
CviKI_1	RGCY	5 cut(s)	15, 60, 81, 195, 259
DpnI	GATC	2 cut(s)	113, 202
DpnII	GATC	2 cut(s)	111, 200
Ecl136II	GAGCTC	1 cut(s)	259
Eco24I	GRGCYC	1 cut(s)	261
Eco47I	GGWCC	1 cut(s)	163
Eco53kI	GAGCTC	1 cut(s)	259
EcoICRI	GAGCTC	1 cut(s)	259
EcoO109I	RGGNCCY	1 cut(s)	163
EcoRI	GAATTC	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	261
FaeI	CATG	2 cut(s)	139, 158
FaiI	YATR	6 cut(s)	30, 137, 156, 216, 227, 240
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	2 cut(s)	135, 154
FauI	CCCGC	1 cut(s)	140
FbaI	TGATCA	1 cut(s)	111
Fnu4HI	GCNGC	1 cut(s)	253
FokI	GGATG	1 cut(s)	80
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	1 cut(s)	253
FspBI	CTAG	1 cut(s)	78
GluI	GCNGC	1 cut(s)	253
HapII	CCGG	1 cut(s)	117
Hin1II	CATG	2 cut(s)	139, 158
HpaII	CCGG	1 cut(s)	117
HphI	GGTGA	1 cut(s)	106
Hpy188I	TCNGA	1 cut(s)	175
Hpy188III	TCNNGA	2 cut(s)	23, 136
HpyCH4IV	ACGT	1 cut(s)	52
HpyCH4V	TGCA	3 cut(s)	4, 89, 248
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpySE526I	ACGT	1 cut(s)	52
Hsp92II	CATG	2 cut(s)	139, 158
Ksp22I	TGATCA	1 cut(s)	111
Kzo9I	GATC	2 cut(s)	111, 200
LpnPI	CCDG	4 cut(s)	84, 130, 146, 180
Lsp1109I	GCAGC	1 cut(s)	264
LweI	GCATC	1 cut(s)	22
MaeI	CTAG	1 cut(s)	78
MaeII	ACGT	1 cut(s)	52
MaeIII	GTNAC	1 cut(s)	53
MalI	GATC	2 cut(s)	113, 202
MboI	GATC	2 cut(s)	111, 200
MhlI	GDGCHC	2 cut(s)	153, 261
MluCI	AATT	4 cut(s)	72, 105, 178, 185
MnlI	CCTC	2 cut(s)	26, 39
MseI	TTAA	2 cut(s)	63, 263
MspCI	CTTAAG	1 cut(s)	62
MspI	CCGG	1 cut(s)	117
Mva1269I	GAATGC	1 cut(s)	149
MwoI	GCNNNNNNNGC	1 cut(s)	95
NdeII	GATC	2 cut(s)	111, 200
NlaIII	CATG	2 cut(s)	139, 158
NlaIV	GGNNCC	2 cut(s)	152, 165
PagI	TCATGA	1 cut(s)	135
PctI	GAATGC	1 cut(s)	149
PflMI	CCANNNNNTGG	1 cut(s)	42
PkrI	GCNGC	1 cut(s)	254
PpuMI	RGGWCCY	1 cut(s)	163
Psp124BI	GAGCTC	1 cut(s)	261
Psp1406I	AACGTT	1 cut(s)	52
Psp5II	RGGWCCY	1 cut(s)	163
PspN4I	GGNNCC	2 cut(s)	152, 165
PspPI	GGNCC	1 cut(s)	163
PspPPI	RGGWCCY	1 cut(s)	163
SacI	GAGCTC	1 cut(s)	261
SaqAI	TTAA	2 cut(s)	63, 263
SatI	GCNGC	1 cut(s)	253
Sau3AI	GATC	2 cut(s)	111, 200
Sau96I	GGNCC	1 cut(s)	163
SduI	GDGCHC	2 cut(s)	153, 261
SetI	ASST	5 cut(s)	55, 83, 165, 197, 261
SfaNI	GCATC	1 cut(s)	22
SinI	GGWCC	1 cut(s)	163
SmlI	CTYRAG	2 cut(s)	21, 62
SmoI	CTYRAG	2 cut(s)	21, 62
Sse9I	AATT	4 cut(s)	72, 105, 178, 185
SsiI	CCGC	1 cut(s)	147
SspI	AATATT	1 cut(s)	94
SspMI	CTAG	1 cut(s)	78
SstI	GAGCTC	1 cut(s)	261
TaiI	ACGT	1 cut(s)	55
TaqI	TCGA	1 cut(s)	219
TasI	AATT	4 cut(s)	72, 105, 178, 185
Tru1I	TTAA	2 cut(s)	63, 263
Tru9I	TTAA	2 cut(s)	63, 263
TseI	GCWGC	1 cut(s)	252
Van91I	CCANNNNNTGG	1 cut(s)	42
Vha464I	CTTAAG	1 cut(s)	62
VpaK11BI	GGWCC	1 cut(s)	163
XapI	RAATTY	2 cut(s)	72, 178
XspI	CTAG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.