Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003233

Physical Location & Seq

Genomic Coordinates Forward (+)

28946647 .. 28949084

Gene Structure 2438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g30930.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGTCGATCACCGAGTACAATGGGAGTGCACTGGTCGCAATGGTGGGGAAGAACTGCTTCGCCATCGCCAGCGATCGCCGCCTCGGTGTTCAGCTCCAGACCGTCGCCACCGACTTCAAGAGGATTAGCCAAGTCCATGATAGGCTCTTCATCGGCCTCTCCGGCCTCGCCACGGACGCTCAGACTCTGTATCAGAGGCTCATGTTTCGGCACAAGCTGTACCAGCTTCGTGAGGAGAGGGATATGAAACCCGAGACTTTTGCGAGCCTCGTTTCGGCTATTCTGTATGAGAAAAGGTTTGGTCCCTACTTCACTCAGCCTGTAATTGCTGGGTTAGGTGATGAAGACAAACCATTCATCTGTACTATGGATTCAATTGGAGCCAAGGAACTAGCAAAAGACTTTGTTGTTGCTGGTACTGCATCCGAGTCCCTTTATGGTGCTTGTGAGGCAATGTTCAAGCCTGATATGGAACCAGAGGAATTGTTTGAGACTGTCTCTCAAGCATTGCTTTCATCAGTAGATCGAGACTGTCTAAGTGGTTGGGGAGGCCACGTCTTTGTCGTAACACCAACTGAAGTGCAGGAGAAGATCTTGAAGGGAAGAATGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005839 GO:0016020 GO:0019774 GO:0031090 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

205

Amino Acids

22.71

Weight (kDa)

5.18

Isoelectric Point (pI)

36.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21720 AT1G77440 AT1G77440
fragaria_vesca	FvH4_2g27460
malus_domestica	MD00G1028400.v1.1 MD15G1344700.v1.1
prunus_persica	Prupe.1G492900_v2.0.a1
pyrus_communis	pycom08g13680 pycom15g30930
rosa_chinensis	RchiOBHm_Chr2g0103031 RchiOBHm_Chr2g0140351 RchiOBHm_Chr4g0425031 RchiOBHm_Chr5g0069521 RchiOBHm_Chr6g0296301
rosa_laevigata	RLG00000003407 RLG00000011708 RLG00000019374
rosa_multiflora	Rmu_co8088830.1_g000001 Rmu_sc0000388.1_g000016 Rmu_sc0004708.1_g000006 Rmu_sc0022551.1_g000001
rosa_roxburghii	Rroxscaffold_2G00139980 Rroxscaffold_7G00171650 Rroxscaffold_7G00178420
rosa_rugosa	Rorug02G0111500 Rorug04G0057000 Rorug05G0263600 Rorug06G0260800
rosa_samantha	Rh1BG051400 Rh2CG166500 Rh6BG194900 Rh6BG380500 Rh6DG172500 Rh7DG016200
rosa_wichuraiana	Rw2G012490 Rw4G002730 Rw6G032480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	79
AcuI	CTGAAG	1 cut(s)	597
AfaI	GTAC	4 cut(s)	17, 221, 364, 418
AfiI	CCNNNNNNNGG	2 cut(s)	172, 274
AgsI	TTSAA	4 cut(s)	118, 375, 460, 598
AjiI	CACGTC	1 cut(s)	556
AluBI	AGCT	3 cut(s)	94, 217, 226
AluI	AGCT	3 cut(s)	94, 217, 226
Alw21I	GWGCWC	1 cut(s)	31
Alw26I	GTCTC	4 cut(s)	248, 485, 502, 522
Alw44I	GTGCAC	1 cut(s)	27
AlwNI	CAGNNNCTG	1 cut(s)	187
Ama87I	CYCGRG	1 cut(s)	251
AoxI	GGCC	3 cut(s)	154, 163, 550
ApaLI	GTGCAC	1 cut(s)	27
AsiSI	GCGATCGC	1 cut(s)	76
Asp700I	GAANNNNTTC	1 cut(s)	56
AspS9I	GGNCC	1 cut(s)	302
AsuHPI	GGTGA	1 cut(s)	350
AvaI	CYCGRG	1 cut(s)	251
AvaII	GGWCC	1 cut(s)	302
BaeGI	GKGCMC	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	351
Bbv12I	GWGCWC	1 cut(s)	31
BccI	CCATC	1 cut(s)	71
BcgI	CGANNNNNNTGC	2 cut(s)	242, 276
BcoDI	GTCTC	4 cut(s)	248, 485, 502, 522
BfaI	CTAG	1 cut(s)	392
BglI	GCCNNNNNGGC	1 cut(s)	162
BglII	AGATCT	1 cut(s)	591
BisI	GCNGC	1 cut(s)	79
BlsI	GCNGC	1 cut(s)	80
Bme18I	GGWCC	1 cut(s)	302
BmeT110I	CYCGRG	1 cut(s)	251
BmgBI	CACGTC	1 cut(s)	556
BmgT120I	GGNCC	1 cut(s)	302
BmiI	GGNNCC	3 cut(s)	304, 382, 474
BmsI	GCATC	1 cut(s)	431
BpiI	GAAGAC	1 cut(s)	351
BplI	GAGNNNNNCTC	2 cut(s)	482, 514
BpmI	CTGGAG	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	486
BsaJI	CCNNGG	3 cut(s)	82, 171, 384
BsaXI	ACNNNNNCTCC	2 cut(s)	540, 570
Bsc4I	CCNNNNNNNGG	2 cut(s)	172, 274
Bse1I	ACTGG	1 cut(s)	36
Bse3DI	GCAATG	3 cut(s)	45, 459, 506
BseDI	CCNNGG	3 cut(s)	82, 171, 384
BseGI	GGATG	1 cut(s)	422
BseLI	CCNNNNNNNGG	2 cut(s)	172, 274
BseMI	GCAATG	3 cut(s)	45, 459, 506
BseMII	CTCAG	2 cut(s)	194, 329
BseNI	ACTGG	1 cut(s)	36
BseRI	GAGGAG	1 cut(s)	248
BseSI	GKGCMC	1 cut(s)	31
BseYI	CCCAGC	1 cut(s)	329
BsgI	GTGCAG	1 cut(s)	602
Bsh1285I	CGRYCG	1 cut(s)	76
BshFI	GGCC	3 cut(s)	156, 165, 552
BsiEI	CGRYCG	1 cut(s)	76
BsiHKAI	GWGCWC	1 cut(s)	31
BsiHKCI	CYCGRG	1 cut(s)	251
BsiSI	CCGG	1 cut(s)	162
BslFI	GGGAC	2 cut(s)	288, 415
BslI	CCNNNNNNNGG	2 cut(s)	172, 274
BsmAI	GTCTC	4 cut(s)	248, 485, 502, 522
BsmFI	GGGAC	2 cut(s)	288, 415
BsnI	GGCC	3 cut(s)	156, 165, 552
BsoBI	CYCGRG	1 cut(s)	251
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	4 cut(s)	6, 73, 523, 591
BspACI	CCGC	1 cut(s)	79
BspANI	GGCC	3 cut(s)	156, 165, 552
BspCNI	CTCAG	2 cut(s)	193, 328
BspLI	GGNNCC	3 cut(s)	304, 382, 474
BspQI	GCTCTTC	1 cut(s)	152
BsrDI	GCAATG	3 cut(s)	45, 459, 506
BsrI	ACTGG	1 cut(s)	36
BssECI	CCNNGG	3 cut(s)	82, 171, 384
BssMI	GATC	4 cut(s)	6, 73, 523, 591
BssT1I	CCWWGG	1 cut(s)	384
Bst4CI	ACNGT	3 cut(s)	103, 496, 533
Bst6I	CTCTTC	1 cut(s)	152
BstC8I	GCNNGC	2 cut(s)	70, 265
BstDEI	CTNAG	3 cut(s)	180, 315, 536
BstDSI	CCRYGG	1 cut(s)	171
BstF5I	GGATG	1 cut(s)	422
BstKTI	GATC	4 cut(s)	9, 76, 526, 594
BstMAI	GTCTC	4 cut(s)	248, 485, 502, 522
BstMBI	GATC	4 cut(s)	6, 73, 523, 591
BstMCI	CGRYCG	1 cut(s)	76
BstMWI	GCNNNNNNNGC	7 cut(s)	35, 78, 162, 176, 223, 419, 449
BstSLI	GKGCMC	1 cut(s)	31
BstV2I	GAAGAC	1 cut(s)	351
BstX2I	RGATCY	1 cut(s)	591
BstYI	RGATCY	1 cut(s)	591
BsuRI	GGCC	3 cut(s)	156, 165, 552
BtgI	CCRYGG	1 cut(s)	171
BtgZI	GCGATG	1 cut(s)	49
BtrI	CACGTC	1 cut(s)	556
BtsCI	GGATG	1 cut(s)	422
BtsIMutI	CAGTG	1 cut(s)	29
Cac8I	GCNNGC	2 cut(s)	70, 265
CaiI	CAGNNNCTG	1 cut(s)	187
Cfr13I	GGNCC	1 cut(s)	302
CseI	GACGC	1 cut(s)	185
Csp6I	GTAC	4 cut(s)	16, 220, 363, 417
CviAII	CATG	2 cut(s)	137, 202
CviQI	GTAC	4 cut(s)	16, 220, 363, 417
DdeI	CTNAG	3 cut(s)	180, 315, 536
DpnI	GATC	4 cut(s)	8, 75, 525, 593
DpnII	GATC	4 cut(s)	6, 73, 523, 591
Eam1104I	CTCTTC	1 cut(s)	152
EarI	CTCTTC	1 cut(s)	152
Eco130I	CCWWGG	1 cut(s)	384
Eco47I	GGWCC	1 cut(s)	302
Eco57I	CTGAAG	1 cut(s)	597
Eco88I	CYCGRG	1 cut(s)	251
EcoT14I	CCWWGG	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	384
FaeI	CATG	2 cut(s)	140, 205
FaiI	YATR	7 cut(s)	138, 203, 245, 288, 368, 438, 470
FalI	AAGNNNNNCTT	4 cut(s)	41, 73, 495, 527
FaqI	GGGAC	2 cut(s)	288, 415
FatI	CATG	2 cut(s)	136, 201
Fnu4HI	GCNGC	1 cut(s)	79
FokI	GGATG	1 cut(s)	409
Fsp4HI	GCNGC	1 cut(s)	79
FspBI	CTAG	1 cut(s)	392
GluI	GCNGC	1 cut(s)	79
GsaI	CCCAGC	1 cut(s)	333
GsuI	CTGGAG	1 cut(s)	80
HaeIII	GGCC	3 cut(s)	156, 165, 552
HapII	CCGG	1 cut(s)	162
HgaI	GACGC	1 cut(s)	185
Hin1II	CATG	2 cut(s)	140, 205
HinfI	GANTC	3 cut(s)	184, 371, 428
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	1 cut(s)	350
Hpy166II	GTNNAC	1 cut(s)	29
Hpy188I	TCNGA	3 cut(s)	183, 195, 427
Hpy188III	TCNNGA	5 cut(s)	97, 118, 230, 527, 595
Hpy8I	GTNNAC	1 cut(s)	29
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	1 cut(s)	592
HpyCH4III	ACNGT	3 cut(s)	103, 496, 533
HpyCH4IV	ACGT	1 cut(s)	555
HpyCH4V	TGCA	3 cut(s)	29, 422, 583
HpyF10VI	GCNNNNNNNGC	7 cut(s)	35, 78, 162, 176, 223, 419, 449
HpyF3I	CTNAG	3 cut(s)	180, 315, 536
HpySE526I	ACGT	1 cut(s)	555
Hsp92II	CATG	2 cut(s)	140, 205
Kzo9I	GATC	4 cut(s)	6, 73, 523, 591
LguI	GCTCTTC	1 cut(s)	152
LmnI	GCTCC	2 cut(s)	99, 380
LweI	GCATC	1 cut(s)	431
MaeI	CTAG	1 cut(s)	392
MaeII	ACGT	1 cut(s)	555
MaeIII	GTNAC	1 cut(s)	565
MalI	GATC	4 cut(s)	8, 75, 525, 593
MboI	GATC	4 cut(s)	6, 73, 523, 591
MboII	GAAGA	5 cut(s)	61, 139, 356, 601, 615
MfeI	CAATTG	1 cut(s)	375
MflI	RGATCY	1 cut(s)	591
MhlI	GDGCHC	1 cut(s)	31
MluCI	AATT	3 cut(s)	324, 375, 482
MlyI	GAGTC	2 cut(s)	178, 437
MroXI	GAANNNNTTC	1 cut(s)	56
MspI	CCGG	1 cut(s)	162
MunI	CAATTG	1 cut(s)	375
MwoI	GCNNNNNNNGC	7 cut(s)	35, 78, 162, 176, 223, 419, 449
NdeII	GATC	4 cut(s)	6, 73, 523, 591
NlaIII	CATG	2 cut(s)	140, 205
NlaIV	GGNNCC	3 cut(s)	304, 382, 474
PciSI	GCTCTTC	1 cut(s)	152
PcsI	WCGNNNNNNNCGW	1 cut(s)	561
PdmI	GAANNNNTTC	1 cut(s)	56
PfeI	GAWTC	1 cut(s)	371
PkrI	GCNGC	1 cut(s)	80
Ple19I	CGATCG	1 cut(s)	76
PleI	GAGTC	2 cut(s)	178, 436
PpsI	GAGTC	2 cut(s)	178, 436
PspFI	CCCAGC	1 cut(s)	329
PspN4I	GGNNCC	3 cut(s)	304, 382, 474
PspPI	GGNCC	1 cut(s)	302
PstNI	CAGNNNCTG	1 cut(s)	187
PsuI	RGATCY	1 cut(s)	591
PvuI	CGATCG	1 cut(s)	76
RgaI	GCGATCGC	1 cut(s)	76
RsaI	GTAC	4 cut(s)	17, 221, 364, 418
RsaNI	GTAC	4 cut(s)	16, 220, 363, 417
SapI	GCTCTTC	1 cut(s)	152
SatI	GCNGC	1 cut(s)	79
Sau3AI	GATC	4 cut(s)	6, 73, 523, 591
Sau96I	GGNCC	1 cut(s)	302
SchI	GAGTC	2 cut(s)	178, 437
SduI	GDGCHC	1 cut(s)	31
SetI	ASST	6 cut(s)	96, 219, 228, 299, 340, 558
SfaAI	GCGATCGC	1 cut(s)	76
SfaNI	GCATC	1 cut(s)	431
SfiI	GGCCNNNNNGGCC	1 cut(s)	162
SgfI	GCGATCGC	1 cut(s)	76
SinI	GGWCC	1 cut(s)	302
SmlI	CTYRAG	1 cut(s)	501
SmoI	CTYRAG	1 cut(s)	501
Sse9I	AATT	3 cut(s)	324, 375, 482
SsiI	CCGC	1 cut(s)	79
SspMI	CTAG	1 cut(s)	392
StyI	CCWWGG	1 cut(s)	384
TaaI	ACNGT	3 cut(s)	103, 496, 533
TaiI	ACGT	1 cut(s)	558
TaqI	TCGA	2 cut(s)	5, 526
TasI	AATT	3 cut(s)	324, 375, 482
TatI	WGTACW	2 cut(s)	15, 362
TauI	GCSGC	1 cut(s)	81
TfiI	GAWTC	1 cut(s)	371
TscAI	CASTG	1 cut(s)	36
TspDTI	ATGAA	5 cut(s)	139, 260, 346, 357, 504
TspGWI	ACGGA	1 cut(s)	188
TspRI	CASTG	1 cut(s)	36
VneI	GTGCAC	1 cut(s)	27
VpaK11BI	GGWCC	1 cut(s)	302
XmnI	GAANNNNTTC	1 cut(s)	56
XspI	CTAG	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.