Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003233

Physical Location & Seq

Genomic Coordinates Reverse (-)

14928034 .. 14930632

Gene Structure 2599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG166500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGAACACAAGCAATTCCTGTGCACTATGGATTCAATTGGAGCTAGCAAAGGAACTAGCGAAAATTTTTCATGTTGCTGGCTCTGGGTCAGAGCCCCTTTATGGTGCTTGTGAGGCGATGTTCAAGCCTGATATGGAGCAAGAGGACTTGTTTGAGCCCATATCTGAAGCATTGCTATCATCAGTAGATCGTGATTGTCTGAATGAGTGGGGATGCCATTTCTATGTGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005839 GO:0016020 GO:0019774 GO:0031090 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

77

Amino Acids

8.64

Weight (kDa)

4.28

Isoelectric Point (pI)

37.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome	PF00227	23 - 76	1.8e-09	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21720 AT1G77440 AT1G77440
fragaria_vesca	FvH4_2g27460
malus_domestica	MD00G1028400.v1.1 MD15G1344700.v1.1
prunus_persica	Prupe.1G492900_v2.0.a1
pyrus_communis	pycom08g13680 pycom15g30930
rosa_chinensis	RchiOBHm_Chr2g0103031 RchiOBHm_Chr2g0140351 RchiOBHm_Chr4g0425031 RchiOBHm_Chr5g0069521 RchiOBHm_Chr6g0296301
rosa_laevigata	RLG00000003407 RLG00000011708 RLG00000019374
rosa_multiflora	Rmu_co8088830.1_g000001 Rmu_sc0000388.1_g000016 Rmu_sc0004708.1_g000006 Rmu_sc0022551.1_g000001
rosa_roxburghii	Rroxscaffold_2G00139980 Rroxscaffold_7G00171650 Rroxscaffold_7G00178420
rosa_rugosa	Rorug02G0111500 Rorug04G0057000 Rorug05G0263600 Rorug06G0260800
rosa_samantha	Rh1BG051400 Rh2CG166500 Rh6BG194900 Rh6BG380500 Rh6DG172500 Rh7DG016200
rosa_wichuraiana	Rw2G012490 Rw4G002730 Rw6G032480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	63
AcuI	CTGAAG	1 cut(s)	186
AfiI	CCNNNNNNNGG	1 cut(s)	101
AgsI	TTSAA	2 cut(s)	35, 124
AluBI	AGCT	1 cut(s)	43
AluI	AGCT	1 cut(s)	43
Alw21I	GWGCWC	1 cut(s)	25
Alw44I	GTGCAC	1 cut(s)	21
ApaLI	GTGCAC	1 cut(s)	21
ApoI	RAATTY	1 cut(s)	63
AsuNHI	GCTAGC	1 cut(s)	43
BaeGI	GKGCMC	1 cut(s)	25
BanII	GRGCYC	2 cut(s)	96, 159
Bbv12I	GWGCWC	1 cut(s)	25
BfaI	CTAG	2 cut(s)	44, 56
BmsI	GCATC	1 cut(s)	203
BmtI	GCTAGC	1 cut(s)	47
Bsc4I	CCNNNNNNNGG	1 cut(s)	101
Bse3DI	GCAATG	1 cut(s)	170
BseGI	GGATG	1 cut(s)	218
BseLI	CCNNNNNNNGG	1 cut(s)	101
BseMI	GCAATG	1 cut(s)	170
BseSI	GKGCMC	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	25
BslI	CCNNNNNNNGG	1 cut(s)	101
Bsp1286I	GDGCHC	3 cut(s)	25, 96, 159
Bsp143I	GATC	1 cut(s)	187
BspOI	GCTAGC	1 cut(s)	47
BsrDI	GCAATG	1 cut(s)	170
BssMI	GATC	1 cut(s)	187
BstC8I	GCNNGC	2 cut(s)	45, 79
BstF5I	GGATG	1 cut(s)	218
BstKTI	GATC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstSLI	GKGCMC	1 cut(s)	25
BtgZI	GCGATG	1 cut(s)	131
BtsCI	GGATG	1 cut(s)	218
Cac8I	GCNNGC	2 cut(s)	45, 79
CviAII	CATG	1 cut(s)	71
CviJI	RGCY	5 cut(s)	43, 81, 94, 127, 157
CviKI_1	RGCY	5 cut(s)	43, 81, 94, 127, 157
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
Eco24I	GRGCYC	2 cut(s)	96, 159
Eco57I	CTGAAG	1 cut(s)	186
EcoT38I	GRGCYC	2 cut(s)	96, 159
FaeI	CATG	1 cut(s)	74
FaiI	YATR	6 cut(s)	28, 72, 102, 134, 161, 225
FatI	CATG	1 cut(s)	70
FokI	GGATG	1 cut(s)	225
FriOI	GRGCYC	2 cut(s)	96, 159
FspBI	CTAG	2 cut(s)	44, 56
Hin1II	CATG	1 cut(s)	74
HinfI	GANTC	1 cut(s)	31
Hpy166II	GTNNAC	1 cut(s)	23
Hpy188I	TCNGA	3 cut(s)	91, 166, 201
Hpy188III	TCNNGA	1 cut(s)	191
Hpy8I	GTNNAC	1 cut(s)	23
HpyCH4V	TGCA	1 cut(s)	23
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
Hsp92II	CATG	1 cut(s)	74
Kzo9I	GATC	1 cut(s)	187
LmnI	GCTCC	2 cut(s)	40, 136
LpnPI	CCDG	4 cut(s)	31, 63, 69, 141
LweI	GCATC	1 cut(s)	203
MaeI	CTAG	2 cut(s)	44, 56
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MfeI	CAATTG	1 cut(s)	35
MhlI	GDGCHC	3 cut(s)	25, 96, 159
MluCI	AATT	3 cut(s)	13, 35, 63
MnlI	CCTC	2 cut(s)	106, 136
MslI	CAYNNNNRTG	1 cut(s)	222
MunI	CAATTG	1 cut(s)	35
MwoI	GCNNNNNNNGC	1 cut(s)	113
NdeII	GATC	1 cut(s)	187
NheI	GCTAGC	1 cut(s)	43
NlaIII	CATG	1 cut(s)	74
PfeI	GAWTC	1 cut(s)	31
RseI	CAYNNNNRTG	1 cut(s)	222
Sau3AI	GATC	1 cut(s)	187
SduI	GDGCHC	3 cut(s)	25, 96, 159
SetI	ASST	1 cut(s)	45
SfaNI	GCATC	1 cut(s)	203
SmiMI	CAYNNNNRTG	1 cut(s)	222
Sse9I	AATT	3 cut(s)	13, 35, 63
SspMI	CTAG	2 cut(s)	44, 56
TasI	AATT	3 cut(s)	13, 35, 63
TfiI	GAWTC	1 cut(s)	31
TspDTI	ATGAA	2 cut(s)	17, 59
VneI	GTGCAC	1 cut(s)	21
XapI	RAATTY	1 cut(s)	63
XspI	CTAG	2 cut(s)	44, 56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.