The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G21720 AT1G77440 AT1G77440 |
| fragaria_vesca | FvH4_2g27460 |
| malus_domestica | MD00G1028400.v1.1 MD15G1344700.v1.1 |
| prunus_persica | Prupe.1G492900_v2.0.a1 |
| pyrus_communis | pycom08g13680 pycom15g30930 |
| rosa_chinensis | RchiOBHm_Chr2g0103031 RchiOBHm_Chr2g0140351 RchiOBHm_Chr4g0425031 RchiOBHm_Chr5g0069521 RchiOBHm_Chr6g0296301 |
| rosa_laevigata | RLG00000003407 RLG00000011708 RLG00000019374 |
| rosa_multiflora | Rmu_co8088830.1_g000001 Rmu_sc0000388.1_g000016 Rmu_sc0004708.1_g000006 Rmu_sc0022551.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00139980 Rroxscaffold_7G00171650 Rroxscaffold_7G00178420 |
| rosa_rugosa | Rorug02G0111500 Rorug04G0057000 Rorug05G0263600 Rorug06G0260800 |
| rosa_samantha | Rh1BG051400 Rh2CG166500 Rh6BG194900 Rh6BG380500 Rh6DG172500 Rh7DG016200 |
| rosa_wichuraiana | Rw2G012490 Rw4G002730 Rw6G032480 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 2 cut(s) | 176, 186 |
| AgsI | TTSAA | 2 cut(s) | 7, 195 |
| ApeKI | GCWGC | 1 cut(s) | 201 |
| ApoI | RAATTY | 2 cut(s) | 176, 186 |
| BanII | GRGCYC | 1 cut(s) | 42 |
| BbvI | GCAGC | 1 cut(s) | 188 |
| BccI | CCATC | 1 cut(s) | 70 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 163, 197 |
| BisI | GCNGC | 1 cut(s) | 202 |
| BlsI | GCNGC | 1 cut(s) | 203 |
| BmsI | GCATC | 1 cut(s) | 86 |
| BpuEI | CTTGAG | 2 cut(s) | 33, 201 |
| Bse3DI | GCAATG | 1 cut(s) | 53 |
| BseGI | GGATG | 1 cut(s) | 101 |
| BseMI | GCAATG | 1 cut(s) | 53 |
| BseMII | CTCAG | 2 cut(s) | 74, 114 |
| BseXI | GCAGC | 1 cut(s) | 188 |
| Bsp1286I | GDGCHC | 1 cut(s) | 42 |
| Bsp143I | GATC | 1 cut(s) | 70 |
| BspCNI | CTCAG | 2 cut(s) | 75, 115 |
| BsrDI | GCAATG | 1 cut(s) | 53 |
| BssMI | GATC | 1 cut(s) | 70 |
| Bst4CI | ACNGT | 1 cut(s) | 166 |
| BstDEI | CTNAG | 2 cut(s) | 83, 123 |
| BstF5I | GGATG | 1 cut(s) | 101 |
| BstKTI | GATC | 1 cut(s) | 73 |
| BstMBI | GATC | 1 cut(s) | 70 |
| BstV1I | GCAGC | 1 cut(s) | 188 |
| BtsCI | GGATG | 1 cut(s) | 101 |
| CviJI | RGCY | 3 cut(s) | 10, 40, 201 |
| CviKI_1 | RGCY | 3 cut(s) | 10, 40, 201 |
| DdeI | CTNAG | 2 cut(s) | 83, 123 |
| DpnI | GATC | 1 cut(s) | 72 |
| DpnII | GATC | 1 cut(s) | 70 |
| Eco24I | GRGCYC | 1 cut(s) | 42 |
| EcoT38I | GRGCYC | 1 cut(s) | 42 |
| FaiI | YATR | 5 cut(s) | 44, 108, 110, 169, 171 |
| Fnu4HI | GCNGC | 1 cut(s) | 202 |
| FokI | GGATG | 1 cut(s) | 108 |
| FriOI | GRGCYC | 1 cut(s) | 42 |
| Fsp4HI | GCNGC | 1 cut(s) | 202 |
| GluI | GCNGC | 1 cut(s) | 202 |
| HincII | GTYRAC | 1 cut(s) | 114 |
| HindII | GTYRAC | 1 cut(s) | 114 |
| HpaI | GTTAAC | 1 cut(s) | 114 |
| Hpy166II | GTNNAC | 2 cut(s) | 114, 223 |
| Hpy188I | TCNGA | 1 cut(s) | 84 |
| Hpy188III | TCNNGA | 1 cut(s) | 74 |
| Hpy8I | GTNNAC | 2 cut(s) | 114, 223 |
| HpyCH4III | ACNGT | 1 cut(s) | 166 |
| HpyCH4V | TGCA | 1 cut(s) | 204 |
| HpyF3I | CTNAG | 2 cut(s) | 83, 123 |
| KspAI | GTTAAC | 1 cut(s) | 114 |
| Kzo9I | GATC | 1 cut(s) | 70 |
| LmnI | GCTCC | 1 cut(s) | 19 |
| LpnPI | CCDG | 1 cut(s) | 24 |
| Lsp1109I | GCAGC | 1 cut(s) | 188 |
| LweI | GCATC | 1 cut(s) | 86 |
| MalI | GATC | 1 cut(s) | 72 |
| MboI | GATC | 1 cut(s) | 70 |
| MboII | GAAGA | 1 cut(s) | 183 |
| MhlI | GDGCHC | 1 cut(s) | 42 |
| MluCI | AATT | 2 cut(s) | 176, 186 |
| MnlI | CCTC | 4 cut(s) | 19, 118, 191, 223 |
| MseI | TTAA | 1 cut(s) | 113 |
| NdeII | GATC | 1 cut(s) | 70 |
| PkrI | GCNGC | 1 cut(s) | 203 |
| SaqAI | TTAA | 1 cut(s) | 113 |
| SatI | GCNGC | 1 cut(s) | 202 |
| Sau3AI | GATC | 1 cut(s) | 70 |
| SduI | GDGCHC | 1 cut(s) | 42 |
| SetI | ASST | 2 cut(s) | 129, 162 |
| SfaNI | GCATC | 1 cut(s) | 86 |
| SmlI | CTYRAG | 2 cut(s) | 48, 216 |
| SmoI | CTYRAG | 2 cut(s) | 48, 216 |
| Sse9I | AATT | 2 cut(s) | 176, 186 |
| TaaI | ACNGT | 1 cut(s) | 166 |
| TaqI | TCGA | 2 cut(s) | 73, 183 |
| TasI | AATT | 2 cut(s) | 176, 186 |
| Tru1I | TTAA | 1 cut(s) | 113 |
| Tru9I | TTAA | 1 cut(s) | 113 |
| TseI | GCWGC | 1 cut(s) | 201 |
| XapI | RAATTY | 2 cut(s) | 176, 186 |