Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003233

Physical Location & Seq

Genomic Coordinates Forward (+)

50691888 .. 50695882

Gene Structure 3995 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39427

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGCTGCTGTTCAGGAACTGGTGGAGGTTTCAGAGGCTTATGTTTAAGCACAAGTTGTACCAGCTAAGGGAAGAGAGGGATATGAAGCCTGAGACTTTTGCTAGCCTCGTCTCAGCTATTATCTATTATCTAGGAGAAAAGGCTAAGGCCATGGCTGGTGATACTGCTGTAAGGTCATTGCTAGAAAAGATGGCTGAATGTGCTAGCAATGCGTACCTGGGTATATTAGAGAGGTGGGTATATGAAGGAGTCATTGATGATCCTTACGGTGAATTTTTCATTGCTGAGAACAAATCTCTTCAAAAGCCTCAAGATTATGAAGCCAAGTATTGGAGGCAACGTTACAGCCTTAAGGATGGAAGTCCTAGCTTTCTTGCAAATATTGCTGGGACAATTTTAATCACTGGAAAATATCTAAATGTCATGAGAGAATGCGGGCAACATGTTCAAGTTCCACTATGTATGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000278 GO:0000280 GO:0000923 GO:0000930 GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0007051 GO:0007052 GO:0007098 GO:0008092 GO:0008150 GO:0008275 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0031023 GO:0031109 GO:0031122 GO:0031974 GO:0031981 GO:0032153 GO:0032155 GO:0032991 GO:0034622 GO:0043015 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0046785 GO:0048285 GO:0051225 GO:0051258 GO:0051298 GO:0051321 GO:0051415 GO:0051418 GO:0065003 GO:0070013 GO:0070925 GO:0071840 GO:0090307 GO:0097435 GO:0140014 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spc97_Spc98

Protein Analysis

156

Amino Acids

18.27

Weight (kDa)

8.7

Isoelectric Point (pI)

41.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCP_N_terminal	PF17681	39 - 149	7.1e-32	Gamma tubulin complex component N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21720 AT1G77440 AT1G77440
fragaria_vesca	FvH4_2g27460
malus_domestica	MD00G1028400.v1.1 MD15G1344700.v1.1
prunus_persica	Prupe.1G492900_v2.0.a1
pyrus_communis	pycom08g13680 pycom15g30930
rosa_chinensis	RchiOBHm_Chr2g0103031 RchiOBHm_Chr2g0140351 RchiOBHm_Chr4g0425031 RchiOBHm_Chr5g0069521 RchiOBHm_Chr6g0296301
rosa_laevigata	RLG00000003407 RLG00000011708 RLG00000019374
rosa_multiflora	Rmu_co8088830.1_g000001 Rmu_sc0000388.1_g000016 Rmu_sc0004708.1_g000006 Rmu_sc0022551.1_g000001
rosa_roxburghii	Rroxscaffold_2G00139980 Rroxscaffold_7G00171650 Rroxscaffold_7G00178420
rosa_rugosa	Rorug02G0111500 Rorug04G0057000 Rorug05G0263600 Rorug06G0260800
rosa_samantha	Rh1BG051400 Rh2CG166500 Rh6BG194900 Rh6BG380500 Rh6DG172500 Rh7DG016200
rosa_wichuraiana	Rw2G012490 Rw4G002730 Rw6G032480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	330
AciI	CCGC	1 cut(s)	435
AclI	AACGTT	1 cut(s)	340
AclWI	GGATC	1 cut(s)	254
AcsI	RAATTY	1 cut(s)	272
AfaI	GTAC	2 cut(s)	59, 215
AfiI	CCNNNNNNNGG	2 cut(s)	67, 330
AflII	CTTAAG	1 cut(s)	350
AflIII	ACRYGT	1 cut(s)	442
AgsI	TTSAA	2 cut(s)	302, 449
AjnI	CCWGG	1 cut(s)	216
AluBI	AGCT	3 cut(s)	64, 116, 369
AluI	AGCT	3 cut(s)	64, 116, 369
Alw26I	GTCTC	2 cut(s)	86, 115
AlwI	GGATC	1 cut(s)	254
AlwNI	CAGNNNCTG	1 cut(s)	18
AoxI	GGCC	1 cut(s)	147
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	1 cut(s)	272
AsuHPI	GGTGA	2 cut(s)	170, 281
AsuNHI	GCTAGC	2 cut(s)	101, 203
BaeI	ACNNNNGTAYC	2 cut(s)	153, 186
BccI	CCATC	2 cut(s)	184, 350
BciT130I	CCWGG	1 cut(s)	218
BcoDI	GTCTC	2 cut(s)	86, 115
BfaI	CTAG	5 cut(s)	102, 131, 182, 204, 366
BfrI	CTTAAG	1 cut(s)	350
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	1 cut(s)	218
BmrFI	CCNGG	1 cut(s)	218
BmtI	GCTAGC	2 cut(s)	105, 207
Bpu10I	CCTNAGC	2 cut(s)	65, 144
BpuEI	CTTGAG	1 cut(s)	294
BsaJI	CCNNGG	2 cut(s)	150, 217
BsaXI	ACNNNNNCTCC	2 cut(s)	325, 355
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 330
Bse1I	ACTGG	2 cut(s)	23, 409
Bse3DI	GCAATG	3 cut(s)	176, 214, 279
BseBI	CCWGG	1 cut(s)	218
BseDI	CCNNGG	2 cut(s)	150, 217
BseGI	GGATG	1 cut(s)	361
BseLI	CCNNNNNNNGG	2 cut(s)	67, 330
BseMI	GCAATG	3 cut(s)	176, 214, 279
BseMII	CTCAG	3 cut(s)	81, 126, 276
BseNI	ACTGG	2 cut(s)	23, 409
BseYI	CCCAGC	1 cut(s)	386
BshFI	GGCC	1 cut(s)	149
BslFI	GGGAC	1 cut(s)	403
BslI	CCNNNNNNNGG	2 cut(s)	67, 330
BsmAI	GTCTC	2 cut(s)	86, 115
BsmBI	CGTCTC	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	403
BsmI	GAATGC	1 cut(s)	437
BsnI	GGCC	1 cut(s)	149
Bsp143I	GATC	2 cut(s)	259, 465
Bsp19I	CCATGG	1 cut(s)	150
BspACI	CCGC	1 cut(s)	435
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	3 cut(s)	82, 125, 277
BspHI	TCATGA	1 cut(s)	423
BspOI	GCTAGC	2 cut(s)	105, 207
BspPI	GGATC	1 cut(s)	254
BspTI	CTTAAG	1 cut(s)	350
BsrDI	GCAATG	3 cut(s)	176, 214, 279
BsrI	ACTGG	2 cut(s)	23, 409
BssECI	CCNNGG	2 cut(s)	150, 217
BssMI	GATC	2 cut(s)	259, 465
BssT1I	CCWWGG	1 cut(s)	150
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	1 cut(s)	269
Bst6I	CTCTTC	2 cut(s)	66, 303
BstAFI	CTTAAG	1 cut(s)	350
BstAPI	GCANNNNNTGC	1 cut(s)	383
BstC8I	GCNNGC	3 cut(s)	103, 205, 437
BstDEI	CTNAG	5 cut(s)	65, 90, 112, 144, 285
BstDSI	CCRYGG	1 cut(s)	150
BstF5I	GGATG	1 cut(s)	361
BstKTI	GATC	2 cut(s)	262, 468
BstMAI	GTCTC	2 cut(s)	86, 115
BstMBI	GATC	2 cut(s)	259, 465
BstMWI	GCNNNNNNNGC	3 cut(s)	200, 209, 383
BstNI	CCWGG	1 cut(s)	218
BstNSI	RCATGY	1 cut(s)	446
BstSCI	CCNGG	1 cut(s)	216
BsuRI	GGCC	1 cut(s)	149
BtgI	CCRYGG	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	361
BtsIMutI	CAGTG	1 cut(s)	402
Cac8I	GCNNGC	3 cut(s)	103, 205, 437
CaiI	CAGNNNCTG	1 cut(s)	18
CciI	TCATGA	1 cut(s)	423
Csp6I	GTAC	2 cut(s)	58, 214
CviAII	CATG	3 cut(s)	151, 424, 443
CviQI	GTAC	2 cut(s)	58, 214
DdeI	CTNAG	5 cut(s)	65, 90, 112, 144, 285
DpnI	GATC	2 cut(s)	261, 467
DpnII	GATC	2 cut(s)	259, 465
Eam1104I	CTCTTC	2 cut(s)	66, 303
EarI	CTCTTC	2 cut(s)	66, 303
Eco130I	CCWWGG	1 cut(s)	150
EcoRII	CCWGG	1 cut(s)	216
EcoT14I	CCWWGG	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	150
Esp3I	CGTCTC	1 cut(s)	115
FaeI	CATG	3 cut(s)	154, 427, 446
FaqI	GGGAC	1 cut(s)	403
FatI	CATG	3 cut(s)	150, 423, 442
FauI	CCCGC	1 cut(s)	428
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	1 cut(s)	368
Fsp4HI	GCNGC	1 cut(s)	5
FspBI	CTAG	5 cut(s)	102, 131, 182, 204, 366
GluI	GCNGC	1 cut(s)	5
GsaI	CCCAGC	1 cut(s)	390
HaeIII	GGCC	1 cut(s)	149
Hin1II	CATG	3 cut(s)	154, 427, 446
HinfI	GANTC	1 cut(s)	249
HphI	GGTGA	2 cut(s)	170, 281
Hpy188I	TCNGA	2 cut(s)	33, 470
Hpy188III	TCNNGA	3 cut(s)	13, 311, 424
HpyAV	CCTTC	1 cut(s)	239
HpyCH4III	ACNGT	1 cut(s)	269
HpyCH4IV	ACGT	1 cut(s)	340
HpyCH4V	TGCA	1 cut(s)	377
HpyF10VI	GCNNNNNNNGC	3 cut(s)	200, 209, 383
HpyF3I	CTNAG	5 cut(s)	65, 90, 112, 144, 285
HpySE526I	ACGT	1 cut(s)	340
Hsp92II	CATG	3 cut(s)	154, 427, 446
Kzo9I	GATC	2 cut(s)	259, 465
LpnPI	CCDG	8 cut(s)	4, 74, 102, 141, 203, 230, 372, 390
MaeI	CTAG	5 cut(s)	102, 131, 182, 204, 366
MaeII	ACGT	1 cut(s)	340
MaeIII	GTNAC	1 cut(s)	341
MalI	GATC	2 cut(s)	261, 467
MboI	GATC	2 cut(s)	259, 465
MboII	GAAGA	2 cut(s)	83, 290
MluCI	AATT	2 cut(s)	272, 393
MlyI	GAGTC	1 cut(s)	258
MnlI	CCTC	7 cut(s)	18, 27, 69, 116, 225, 318, 327
MseI	TTAA	3 cut(s)	45, 351, 398
MspCI	CTTAAG	1 cut(s)	350
MspR9I	CCNGG	1 cut(s)	218
Mva1269I	GAATGC	1 cut(s)	437
MvaI	CCWGG	1 cut(s)	218
MwoI	GCNNNNNNNGC	3 cut(s)	200, 209, 383
NcoI	CCATGG	1 cut(s)	150
NdeII	GATC	2 cut(s)	259, 465
NheI	GCTAGC	2 cut(s)	101, 203
NlaIII	CATG	3 cut(s)	154, 427, 446
NspI	RCATGY	1 cut(s)	446
PagI	TCATGA	1 cut(s)	423
PciI	ACATGT	1 cut(s)	442
PctI	GAATGC	1 cut(s)	437
PflMI	CCANNNNNTGG	1 cut(s)	330
PkrI	GCNGC	1 cut(s)	6
PleI	GAGTC	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	257
PscI	ACATGT	1 cut(s)	442
Psp1406I	AACGTT	1 cut(s)	340
Psp6I	CCWGG	1 cut(s)	216
PspFI	CCCAGC	1 cut(s)	386
PspGI	CCWGG	1 cut(s)	216
PstNI	CAGNNNCTG	1 cut(s)	18
RsaI	GTAC	2 cut(s)	59, 215
RsaNI	GTAC	2 cut(s)	58, 214
SaqAI	TTAA	3 cut(s)	45, 351, 398
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	2 cut(s)	259, 465
SchI	GAGTC	1 cut(s)	258
ScrFI	CCNGG	1 cut(s)	218
SetI	ASST	8 cut(s)	29, 66, 118, 176, 219, 236, 343, 371
SmlI	CTYRAG	2 cut(s)	309, 350
SmoI	CTYRAG	2 cut(s)	309, 350
Sse9I	AATT	2 cut(s)	272, 393
SsiI	CCGC	1 cut(s)	435
SspI	AATATT	1 cut(s)	382
SspMI	CTAG	5 cut(s)	102, 131, 182, 204, 366
StyD4I	CCNGG	1 cut(s)	216
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	1 cut(s)	269
TaiI	ACGT	1 cut(s)	343
TasI	AATT	2 cut(s)	272, 393
Tru1I	TTAA	3 cut(s)	45, 351, 398
Tru9I	TTAA	3 cut(s)	45, 351, 398
TscAI	CASTG	1 cut(s)	409
TseI	GCWGC	1 cut(s)	4
TspDTI	ATGAA	4 cut(s)	98, 258, 268, 333
TspRI	CASTG	1 cut(s)	409
Van91I	CCANNNNNTGG	1 cut(s)	330
Vha464I	CTTAAG	1 cut(s)	350
XapI	RAATTY	1 cut(s)	272
XceI	RCATGY	1 cut(s)	446
XspI	CTAG	5 cut(s)	102, 131, 182, 204, 366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.