Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003233

Physical Location & Seq

Genomic Coordinates Reverse (-)

1320328 .. 1323726

Gene Structure 3399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG016200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGTCGGCGATGAAGATCAATAGTTCAAATTCGTGCCCTTCAACTCCTTGTTGGATCTCCGAGAGGTTGTTCCTCACTGACCGCTTCCATCAGGTTCCTCCTTCTCATCTTCTCTTTACTCTTTACTTTAACCTCCTCCTCCTTTACTTTCCATTTGAAATTTCCGGCAGAAAACCAAATGGACGTCGCGTTTCGCCACCAATACCAAGGATTCCCATACGTAAGTTTAATATCATTTCTCCATATATCACTTTTGTCTTTTCTTCATATCTTCTTCTTCTTCTTGTTTGTCACCTCTTCCTTTTGGAATTTGCAGTGTGGGATTCCAAGATTCCATTGGCTGTTACAATGCTGCTGTTCAGGAACTGGTGGAGGTTTCAGAGGCTTATGTTTAAGCACAAGTTGTACCAGCTAAGGGAAGAGAGGGATATGAAGCCTGAGACTTTTGCTAGCCTCGTCTCAGCTATTATCTATTATCTACGAGAAAAGGCTAAGGCCATGGCTGGTGATACTGCTGTAAGATCATTGCCAGAAAAGATGGCTGAATGTGCTAGCAATGCGTACCTGTGTATATTAGAGAGGTGGGTATATGAAGGAGTCATTGATGATCCTTACGGTGATTTTTTCATTGCTGAGAACAAATATCTTCAAAAGGAAAGCCTCAAGATTATGAAGCCAAGTATTGGAGGCAACGTTACAGCCTTAAGGATGGAAGTCCTAGCTTTCTTGCAAATATTGCTGGGACAATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000278 GO:0000280 GO:0000923 GO:0000930 GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0007051 GO:0007052 GO:0007098 GO:0008092 GO:0008150 GO:0008275 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0031023 GO:0031109 GO:0031122 GO:0031974 GO:0031981 GO:0032153 GO:0032155 GO:0032991 GO:0034622 GO:0043015 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0046785 GO:0048285 GO:0051225 GO:0051258 GO:0051298 GO:0051321 GO:0051415 GO:0051418 GO:0065003 GO:0070013 GO:0070925 GO:0071840 GO:0090307 GO:0097435 GO:0140014 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spc97_Spc98

Protein Analysis

250

Amino Acids

29.21

Weight (kDa)

9.34

Isoelectric Point (pI)

47.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCP_N_terminal	PF17681	155 - 221	7e-14	Gamma tubulin complex component N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21720 AT1G77440 AT1G77440
fragaria_vesca	FvH4_2g27460
malus_domestica	MD00G1028400.v1.1 MD15G1344700.v1.1
prunus_persica	Prupe.1G492900_v2.0.a1
pyrus_communis	pycom08g13680 pycom15g30930
rosa_chinensis	RchiOBHm_Chr2g0103031 RchiOBHm_Chr2g0140351 RchiOBHm_Chr4g0425031 RchiOBHm_Chr5g0069521 RchiOBHm_Chr6g0296301
rosa_laevigata	RLG00000003407 RLG00000011708 RLG00000019374
rosa_multiflora	Rmu_co8088830.1_g000001 Rmu_sc0000388.1_g000016 Rmu_sc0004708.1_g000006 Rmu_sc0022551.1_g000001
rosa_roxburghii	Rroxscaffold_2G00139980 Rroxscaffold_7G00171650 Rroxscaffold_7G00178420
rosa_rugosa	Rorug02G0111500 Rorug04G0057000 Rorug05G0263600 Rorug06G0260800
rosa_samantha	Rh1BG051400 Rh2CG166500 Rh6BG194900 Rh6BG380500 Rh6DG172500 Rh7DG016200
rosa_wichuraiana	Rw2G012490 Rw4G002730 Rw6G032480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	187
AccB7I	CCANNNNNTGG	1 cut(s)	683
AccII	CGCG	1 cut(s)	189
AciI	CCGC	1 cut(s)	82
AclI	AACGTT	1 cut(s)	693
AclWI	GGATC	2 cut(s)	62, 602
AcsI	RAATTY	3 cut(s)	28, 159, 308
AcyI	GRCGYC	1 cut(s)	184
AfaI	GTAC	2 cut(s)	407, 563
AfiI	CCNNNNNNNGG	2 cut(s)	415, 683
AflII	CTTAAG	1 cut(s)	703
AgsI	TTSAA	4 cut(s)	27, 42, 158, 650
AluBI	AGCT	3 cut(s)	412, 464, 722
AluI	AGCT	3 cut(s)	412, 464, 722
Alw26I	GTCTC	2 cut(s)	434, 463
AlwI	GGATC	2 cut(s)	62, 602
AlwNI	CAGNNNCTG	1 cut(s)	366
AoxI	GGCC	1 cut(s)	495
ApeKI	GCWGC	1 cut(s)	352
ApoI	RAATTY	3 cut(s)	28, 159, 308
AsuHPI	GGTGA	3 cut(s)	284, 518, 629
AsuNHI	GCTAGC	2 cut(s)	449, 551
BaeGI	GKGCMC	1 cut(s)	38
BaeI	ACNNNNGTAYC	2 cut(s)	501, 534
BbvI	GCAGC	1 cut(s)	339
BccI	CCATC	3 cut(s)	96, 532, 703
BcoDI	GTCTC	2 cut(s)	434, 463
BfaI	CTAG	3 cut(s)	450, 552, 719
BfrI	CTTAAG	1 cut(s)	703
BisI	GCNGC	1 cut(s)	353
BlsI	GCNGC	1 cut(s)	354
BmiI	GGNNCC	1 cut(s)	96
BmtI	GCTAGC	2 cut(s)	453, 555
Bpu10I	CCTNAGC	2 cut(s)	413, 492
BpuEI	CTTGAG	1 cut(s)	647
BsaAI	YACGTR	1 cut(s)	221
BsaBI	GATNNNNATC	1 cut(s)	14
BsaHI	GRCGYC	1 cut(s)	184
BsaJI	CCNNGG	2 cut(s)	206, 498
BsaXI	ACNNNNNCTCC	2 cut(s)	678, 708
Bsc4I	CCNNNNNNNGG	2 cut(s)	415, 683
Bse1I	ACTGG	1 cut(s)	371
Bse3DI	GCAATG	3 cut(s)	524, 562, 627
Bse8I	GATNNNNATC	1 cut(s)	14
BseDI	CCNNGG	2 cut(s)	206, 498
BseGI	GGATG	1 cut(s)	714
BseJI	GATNNNNATC	1 cut(s)	14
BseLI	CCNNNNNNNGG	2 cut(s)	415, 683
BseMI	GCAATG	3 cut(s)	524, 562, 627
BseMII	CTCAG	3 cut(s)	429, 474, 624
BseNI	ACTGG	1 cut(s)	371
BseRI	GAGGAG	2 cut(s)	125, 128
BseSI	GKGCMC	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	339
BseYI	CCCAGC	1 cut(s)	739
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	1 cut(s)	497
BsiSI	CCGG	1 cut(s)	165
BslI	CCNNNNNNNGG	2 cut(s)	415, 683
BsmAI	GTCTC	2 cut(s)	434, 463
BsmBI	CGTCTC	1 cut(s)	463
BsnI	GGCC	1 cut(s)	497
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	4 cut(s)	15, 54, 521, 607
Bsp19I	CCATGG	1 cut(s)	498
BspACI	CCGC	1 cut(s)	82
BspANI	GGCC	1 cut(s)	497
BspCNI	CTCAG	3 cut(s)	430, 473, 625
BspFNI	CGCG	1 cut(s)	189
BspLI	GGNNCC	1 cut(s)	96
BspOI	GCTAGC	2 cut(s)	453, 555
BspPI	GGATC	2 cut(s)	62, 602
BspTI	CTTAAG	1 cut(s)	703
BsrDI	GCAATG	3 cut(s)	524, 562, 627
BsrI	ACTGG	1 cut(s)	371
BssECI	CCNNGG	2 cut(s)	206, 498
BssMI	GATC	4 cut(s)	15, 54, 521, 607
BssNI	GRCGYC	1 cut(s)	184
BssT1I	CCWWGG	2 cut(s)	206, 498
Bst4CI	ACNGT	1 cut(s)	617
Bst6I	CTCTTC	2 cut(s)	302, 414
BstACI	GRCGYC	1 cut(s)	184
BstAFI	CTTAAG	1 cut(s)	703
BstAPI	GCANNNNNTGC	1 cut(s)	736
BstBAI	YACGTR	1 cut(s)	221
BstC8I	GCNNGC	2 cut(s)	451, 553
BstDEI	CTNAG	5 cut(s)	413, 438, 460, 492, 633
BstDSI	CCRYGG	1 cut(s)	498
BstF5I	GGATG	1 cut(s)	714
BstFNI	CGCG	1 cut(s)	189
BstKTI	GATC	4 cut(s)	18, 57, 524, 610
BstMAI	GTCTC	2 cut(s)	434, 463
BstMBI	GATC	4 cut(s)	15, 54, 521, 607
BstMWI	GCNNNNNNNGC	3 cut(s)	548, 557, 736
BstSLI	GKGCMC	1 cut(s)	38
BstSNI	TACGTA	1 cut(s)	221
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	1 cut(s)	339
BstX2I	RGATCY	1 cut(s)	54
BstYI	RGATCY	1 cut(s)	54
BsuRI	GGCC	1 cut(s)	497
BtgI	CCRYGG	1 cut(s)	498
BtgZI	GCGATG	1 cut(s)	23
BtsCI	GGATG	1 cut(s)	714
BtsI	GCAGTG	1 cut(s)	321
BtsIMutI	CAGTG	2 cut(s)	75, 321
Cac8I	GCNNGC	2 cut(s)	451, 553
CaiI	CAGNNNCTG	1 cut(s)	366
Csp6I	GTAC	2 cut(s)	406, 562
CviAII	CATG	1 cut(s)	499
CviQI	GTAC	2 cut(s)	406, 562
DdeI	CTNAG	5 cut(s)	413, 438, 460, 492, 633
DpnI	GATC	4 cut(s)	17, 56, 523, 609
DpnII	GATC	4 cut(s)	15, 54, 521, 607
Eam1104I	CTCTTC	2 cut(s)	302, 414
EarI	CTCTTC	2 cut(s)	302, 414
Eco105I	TACGTA	1 cut(s)	221
Eco130I	CCWWGG	2 cut(s)	206, 498
EcoT14I	CCWWGG	2 cut(s)	206, 498
ErhI	CCWWGG	2 cut(s)	206, 498
Esp3I	CGTCTC	1 cut(s)	463
FaeI	CATG	1 cut(s)	502
FatI	CATG	1 cut(s)	498
Fnu4HI	GCNGC	1 cut(s)	353
FokI	GGATG	1 cut(s)	721
Fsp4HI	GCNGC	1 cut(s)	353
FspBI	CTAG	3 cut(s)	450, 552, 719
GluI	GCNGC	1 cut(s)	353
GsaI	CCCAGC	1 cut(s)	743
HaeIII	GGCC	1 cut(s)	497
HapII	CCGG	1 cut(s)	165
Hin1I	GRCGYC	1 cut(s)	184
Hin1II	CATG	1 cut(s)	502
HinfI	GANTC	4 cut(s)	211, 323, 331, 597
HpaII	CCGG	1 cut(s)	165
HphI	GGTGA	3 cut(s)	284, 518, 629
Hpy188I	TCNGA	2 cut(s)	61, 381
Hpy188III	TCNNGA	2 cut(s)	361, 664
Hpy99I	CGWCG	1 cut(s)	189
HpyAV	CCTTC	3 cut(s)	48, 111, 587
HpyCH4III	ACNGT	1 cut(s)	617
HpyCH4IV	ACGT	3 cut(s)	184, 220, 693
HpyCH4V	TGCA	2 cut(s)	314, 730
HpyF10VI	GCNNNNNNNGC	3 cut(s)	548, 557, 736
HpyF3I	CTNAG	5 cut(s)	413, 438, 460, 492, 633
HpySE526I	ACGT	3 cut(s)	184, 220, 693
Hsp92I	GRCGYC	1 cut(s)	184
Hsp92II	CATG	1 cut(s)	502
Kzo9I	GATC	4 cut(s)	15, 54, 521, 607
Lsp1109I	GCAGC	1 cut(s)	339
MaeI	CTAG	3 cut(s)	450, 552, 719
MaeII	ACGT	3 cut(s)	184, 220, 693
MaeIII	GTNAC	3 cut(s)	290, 343, 694
MalI	GATC	4 cut(s)	17, 56, 523, 609
MboI	GATC	4 cut(s)	15, 54, 521, 607
MflI	RGATCY	1 cut(s)	54
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	4 cut(s)	28, 159, 308, 746
MlyI	GAGTC	1 cut(s)	606
MmeI	TCCRAC	1 cut(s)	32
MseI	TTAA	5 cut(s)	129, 228, 393, 704, 751
MspCI	CTTAAG	1 cut(s)	703
MspI	CCGG	1 cut(s)	165
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	3 cut(s)	548, 557, 736
NcoI	CCATGG	1 cut(s)	498
NdeII	GATC	4 cut(s)	15, 54, 521, 607
NheI	GCTAGC	2 cut(s)	449, 551
NlaIII	CATG	1 cut(s)	502
NlaIV	GGNNCC	1 cut(s)	96
NmuCI	GTSAC	1 cut(s)	290
PfeI	GAWTC	3 cut(s)	211, 323, 331
PflMI	CCANNNNNTGG	1 cut(s)	683
PkrI	GCNGC	1 cut(s)	354
PleI	GAGTC	1 cut(s)	605
PpsI	GAGTC	1 cut(s)	605
Ppu21I	YACGTR	1 cut(s)	221
Psp1406I	AACGTT	1 cut(s)	693
PspFI	CCCAGC	1 cut(s)	739
PspN4I	GGNNCC	1 cut(s)	96
PstNI	CAGNNNCTG	1 cut(s)	366
PsuI	RGATCY	1 cut(s)	54
RsaI	GTAC	2 cut(s)	407, 563
RsaNI	GTAC	2 cut(s)	406, 562
SaqAI	TTAA	5 cut(s)	129, 228, 393, 704, 751
SatI	GCNGC	1 cut(s)	353
Sau3AI	GATC	4 cut(s)	15, 54, 521, 607
SchI	GAGTC	1 cut(s)	606
SduI	GDGCHC	1 cut(s)	38
SmlI	CTYRAG	2 cut(s)	662, 703
SmoI	CTYRAG	2 cut(s)	662, 703
SnaBI	TACGTA	1 cut(s)	221
Sse9I	AATT	4 cut(s)	28, 159, 308, 746
SsiI	CCGC	1 cut(s)	82
SspI	AATATT	1 cut(s)	735
SspMI	CTAG	3 cut(s)	450, 552, 719
StyI	CCWWGG	2 cut(s)	206, 498
TaaI	ACNGT	1 cut(s)	617
TaiI	ACGT	3 cut(s)	187, 223, 696
TasI	AATT	4 cut(s)	28, 159, 308, 746
TfiI	GAWTC	3 cut(s)	211, 323, 331
Tru1I	TTAA	5 cut(s)	129, 228, 393, 704, 751
Tru9I	TTAA	5 cut(s)	129, 228, 393, 704, 751
TscAI	CASTG	2 cut(s)	82, 321
TseFI	GTSAC	1 cut(s)	290
TseI	GCWGC	1 cut(s)	352
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	6 cut(s)	26, 255, 446, 606, 616, 686
TspRI	CASTG	2 cut(s)	82, 321
Van91I	CCANNNNNTGG	1 cut(s)	683
Vha464I	CTTAAG	1 cut(s)	703
XapI	RAATTY	3 cut(s)	28, 159, 308
XcmI	CCANNNNNNNNNTGG	1 cut(s)	334
XspI	CTAG	3 cut(s)	450, 552, 719
ZraI	GACGTC	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.