Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003233

Physical Location & Seq

Genomic Coordinates Forward (+)

11965873 .. 11968501

Gene Structure 2629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00171650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGTCGATCTTCGAGTATAATGGAGGTGCTATAATCGCAATGGTGGGGAAGAACTGCTTCGCCATCGCCTCCGATCGCCGCCTCGGCGTTCAGCTCCAGACAATCGCCACCGACTTCAAGAAGATTTACAGGGTCAGCGATAGGCTCTTCCTCGGTCTCTCCGGCCTCGCCACCGATGCTCAGACTCTGTTTCAGAGGCTTATGTTTAAGCACAAGCTGTACCAGCTGAGGGAAGAGAGGGATATGAAGCCTGAGACTTTTGCTAGTCTTGTATCGGCTATTCTCTACGAGAAAAGGTTTGGTCCATACTTCATTCAGCCTGTGATTGCTGGATTGGGAGATGAAGACAAGCCGTTCATCTGTACTATGGATTCAATCGGAGCCAAGGAACTGGCGAAGGATTTTGTTGTTGCTGGCACTGCATCAGAGTCCCTTTATGGTGCTTGTGAGGCGATGTTCAAGCCTGACATGCAACCTGAGGAATTATTTGAGACTGTATCTCAAGCACTTCTATCATCAGTGGATCGAGACTGTTTGAGTGGATGGGGTGGCCATATCTATGTTGTGAAGATTGTTCGCTTAATATCTTTAGTGCTATGTAAGAAGCGGTATGGTTCTGTATCCTTGGGGCATACTGTTGCAATGCCTATTGTGACAGAGCCGACACCAACCGAGGTGAAGGAGAGGATCTTGAAGGGACGGATGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005839 GO:0016020 GO:0019774 GO:0031090 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

236

Amino Acids

26.3

Weight (kDa)

7.6

Isoelectric Point (pI)

31.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome	PF00227	7 - 189	1.1e-46	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21720 AT1G77440 AT1G77440
fragaria_vesca	FvH4_2g27460
malus_domestica	MD00G1028400.v1.1 MD15G1344700.v1.1
prunus_persica	Prupe.1G492900_v2.0.a1
pyrus_communis	pycom08g13680 pycom15g30930
rosa_chinensis	RchiOBHm_Chr2g0103031 RchiOBHm_Chr2g0140351 RchiOBHm_Chr4g0425031 RchiOBHm_Chr5g0069521 RchiOBHm_Chr6g0296301
rosa_laevigata	RLG00000003407 RLG00000011708 RLG00000019374
rosa_multiflora	Rmu_co8088830.1_g000001 Rmu_sc0000388.1_g000016 Rmu_sc0004708.1_g000006 Rmu_sc0022551.1_g000001
rosa_roxburghii	Rroxscaffold_2G00139980 Rroxscaffold_7G00171650 Rroxscaffold_7G00178420
rosa_rugosa	Rorug02G0111500 Rorug04G0057000 Rorug05G0263600 Rorug06G0260800
rosa_samantha	Rh1BG051400 Rh2CG166500 Rh6BG194900 Rh6BG380500 Rh6DG172500 Rh7DG016200
rosa_wichuraiana	Rw2G012490 Rw4G002730 Rw6G032480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	79, 607
AclWI	GGATC	2 cut(s)	531, 695
AcoI	YGGCCR	1 cut(s)	550
AfaI	GTAC	2 cut(s)	221, 364
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	4 cut(s)	118, 375, 460, 694
AluBI	AGCT	3 cut(s)	94, 217, 226
AluI	AGCT	3 cut(s)	94, 217, 226
Alw26I	GTCTC	4 cut(s)	161, 248, 485, 522
AlwI	GGATC	2 cut(s)	531, 695
AlwNI	CAGNNNCTG	1 cut(s)	187
AoxI	GGCC	2 cut(s)	163, 550
Asp700I	GAANNNNTTC	1 cut(s)	56
AspS9I	GGNCC	1 cut(s)	302
AsuHPI	GGTGA	1 cut(s)	688
AvaII	GGWCC	1 cut(s)	302
AxyI	CCTNAGG	1 cut(s)	477
BalI	TGGCCA	1 cut(s)	552
BbsI	GAAGAC	1 cut(s)	351
BbvCI	CCTCAGC	1 cut(s)	227
BccI	CCATC	3 cut(s)	71, 537, 697
BceAI	ACGGC	1 cut(s)	337
BciVI	GTATCC	1 cut(s)	631
BcoDI	GTCTC	4 cut(s)	161, 248, 485, 522
BfaI	CTAG	1 cut(s)	264
BfuI	GTATCC	1 cut(s)	631
BglI	GCCNNNNNGGC	1 cut(s)	84
BisI	GCNGC	1 cut(s)	79
BlsI	GCNGC	1 cut(s)	80
Bme18I	GGWCC	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	302
BmiI	GGNNCC	1 cut(s)	382
BmsI	GCATC	2 cut(s)	166, 431
BpiI	GAAGAC	1 cut(s)	351
BpmI	CTGGAG	1 cut(s)	80
Bpu10I	CCTNAGC	1 cut(s)	227
BpuEI	CTTGAG	1 cut(s)	486
BsaI	GGTCTC	1 cut(s)	161
BsaJI	CCNNGG	5 cut(s)	82, 151, 384, 624, 672
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse1I	ACTGG	1 cut(s)	396
Bse21I	CCTNAGG	1 cut(s)	477
Bse3DI	GCAATG	2 cut(s)	45, 648
BseDI	CCNNGG	5 cut(s)	82, 151, 384, 624, 672
BseGI	GGATG	2 cut(s)	548, 708
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMI	GCAATG	2 cut(s)	45, 648
BseMII	CTCAG	4 cut(s)	194, 218, 243, 468
BseNI	ACTGG	1 cut(s)	396
Bsh1285I	CGRYCG	1 cut(s)	76
BshFI	GGCC	2 cut(s)	165, 552
BsiEI	CGRYCG	1 cut(s)	76
BsiSI	CCGG	1 cut(s)	162
BslFI	GGGAC	1 cut(s)	415
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	4 cut(s)	161, 248, 485, 522
BsmFI	GGGAC	1 cut(s)	415
BsnI	GGCC	2 cut(s)	165, 552
Bso31I	GGTCTC	1 cut(s)	161
Bsp143I	GATC	4 cut(s)	6, 73, 523, 687
BspACI	CCGC	2 cut(s)	79, 607
BspANI	GGCC	2 cut(s)	165, 552
BspCNI	CTCAG	4 cut(s)	193, 219, 244, 469
BspLI	GGNNCC	1 cut(s)	382
BspPI	GGATC	2 cut(s)	531, 695
BspQI	GCTCTTC	1 cut(s)	152
BspTNI	GGTCTC	1 cut(s)	161
BsrDI	GCAATG	2 cut(s)	45, 648
BsrI	ACTGG	1 cut(s)	396
BssECI	CCNNGG	5 cut(s)	82, 151, 384, 624, 672
BssMI	GATC	4 cut(s)	6, 73, 523, 687
BssT1I	CCWWGG	2 cut(s)	384, 624
Bst4CI	ACNGT	3 cut(s)	496, 533, 637
Bst6I	CTCTTC	2 cut(s)	152, 228
BstC8I	GCNNGC	1 cut(s)	415
BstDEI	CTNAG	4 cut(s)	180, 227, 252, 477
BstF5I	GGATG	2 cut(s)	548, 708
BstKTI	GATC	4 cut(s)	9, 76, 526, 690
BstMAI	GTCTC	4 cut(s)	161, 248, 485, 522
BstMBI	GATC	4 cut(s)	6, 73, 523, 687
BstMCI	CGRYCG	1 cut(s)	76
BstMWI	GCNNNNNNNGC	7 cut(s)	35, 84, 176, 223, 419, 449, 469
BstNSI	RCATGY	1 cut(s)	472
BstV2I	GAAGAC	1 cut(s)	351
BstX2I	RGATCY	1 cut(s)	687
BstXI	CCANNNNNNTGG	1 cut(s)	391
BstYI	RGATCY	1 cut(s)	687
Bsu36I	CCTNAGG	1 cut(s)	477
BsuI	GTATCC	1 cut(s)	631
BsuRI	GGCC	2 cut(s)	165, 552
BtgZI	GCGATG	2 cut(s)	49, 467
BtsCI	GGATG	2 cut(s)	548, 708
BtsI	GCAGTG	1 cut(s)	417
BtsIMutI	CAGTG	2 cut(s)	417, 525
Cac8I	GCNNGC	1 cut(s)	415
CaiI	CAGNNNCTG	1 cut(s)	187
Cfr13I	GGNCC	1 cut(s)	302
Csp6I	GTAC	2 cut(s)	220, 363
CviAII	CATG	1 cut(s)	469
CviQI	GTAC	2 cut(s)	220, 363
DdeI	CTNAG	4 cut(s)	180, 227, 252, 477
DpnI	GATC	4 cut(s)	8, 75, 525, 689
DpnII	GATC	4 cut(s)	6, 73, 523, 687
EaeI	YGGCCR	1 cut(s)	550
Eam1104I	CTCTTC	2 cut(s)	152, 228
EarI	CTCTTC	2 cut(s)	152, 228
Eco130I	CCWWGG	2 cut(s)	384, 624
Eco31I	GGTCTC	1 cut(s)	161
Eco47I	GGWCC	1 cut(s)	302
Eco81I	CCTNAGG	1 cut(s)	477
EcoT14I	CCWWGG	2 cut(s)	384, 624
ErhI	CCWWGG	2 cut(s)	384, 624
FaeI	CATG	1 cut(s)	472
FalI	AAGNNNNNCTT	2 cut(s)	41, 73
FaqI	GGGAC	1 cut(s)	415
FatI	CATG	1 cut(s)	468
Fnu4HI	GCNGC	1 cut(s)	79
FokI	GGATG	1 cut(s)	555
Fsp4HI	GCNGC	1 cut(s)	79
FspBI	CTAG	1 cut(s)	264
GluI	GCNGC	1 cut(s)	79
GsuI	CTGGAG	1 cut(s)	80
HaeIII	GGCC	2 cut(s)	165, 552
HapII	CCGG	1 cut(s)	162
Hin1II	CATG	1 cut(s)	472
HinfI	GANTC	3 cut(s)	184, 371, 428
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	1 cut(s)	688
Hpy188I	TCNGA	5 cut(s)	73, 183, 195, 380, 427
Hpy188III	TCNNGA	4 cut(s)	97, 118, 527, 691
HpyAV	CCTTC	3 cut(s)	391, 673, 688
HpyCH4III	ACNGT	3 cut(s)	496, 533, 637
HpyCH4V	TGCA	3 cut(s)	422, 472, 641
HpyF10VI	GCNNNNNNNGC	7 cut(s)	35, 84, 176, 223, 419, 449, 469
HpyF3I	CTNAG	4 cut(s)	180, 227, 252, 477
Hsp92II	CATG	1 cut(s)	472
Kzo9I	GATC	4 cut(s)	6, 73, 523, 687
LguI	GCTCTTC	1 cut(s)	152
LmnI	GCTCC	2 cut(s)	99, 380
LweI	GCATC	2 cut(s)	166, 431
MaeI	CTAG	1 cut(s)	264
MaeIII	GTNAC	1 cut(s)	652
MalI	GATC	4 cut(s)	8, 75, 525, 689
MboI	GATC	4 cut(s)	6, 73, 523, 687
MboII	GAAGA	6 cut(s)	61, 133, 139, 245, 356, 580
MflI	RGATCY	1 cut(s)	687
MlsI	TGGCCA	1 cut(s)	552
MluCI	AATT	1 cut(s)	482
MluNI	TGGCCA	1 cut(s)	552
MlyI	GAGTC	2 cut(s)	178, 437
Mox20I	TGGCCA	1 cut(s)	552
MroXI	GAANNNNTTC	1 cut(s)	56
MscI	TGGCCA	1 cut(s)	552
MseI	TTAA	2 cut(s)	207, 581
MslI	CAYNNNNRTG	1 cut(s)	558
Msp20I	TGGCCA	1 cut(s)	552
MspA1I	CMGCKG	1 cut(s)	226
MspI	CCGG	1 cut(s)	162
MwoI	GCNNNNNNNGC	7 cut(s)	35, 84, 176, 223, 419, 449, 469
NdeII	GATC	4 cut(s)	6, 73, 523, 687
NlaIII	CATG	1 cut(s)	472
NlaIV	GGNNCC	1 cut(s)	382
NmeAIII	GCCGAG	1 cut(s)	63
NmuCI	GTSAC	1 cut(s)	652
NspI	RCATGY	1 cut(s)	472
PciSI	GCTCTTC	1 cut(s)	152
PdmI	GAANNNNTTC	1 cut(s)	56
PfeI	GAWTC	1 cut(s)	371
PkrI	GCNGC	1 cut(s)	80
Ple19I	CGATCG	1 cut(s)	76
PleI	GAGTC	2 cut(s)	178, 436
PpsI	GAGTC	2 cut(s)	178, 436
PspN4I	GGNNCC	1 cut(s)	382
PspPI	GGNCC	1 cut(s)	302
PstNI	CAGNNNCTG	1 cut(s)	187
PsuI	RGATCY	1 cut(s)	687
PvuI	CGATCG	1 cut(s)	76
PvuII	CAGCTG	1 cut(s)	226
RsaI	GTAC	2 cut(s)	221, 364
RsaNI	GTAC	2 cut(s)	220, 363
RseI	CAYNNNNRTG	1 cut(s)	558
SapI	GCTCTTC	1 cut(s)	152
SaqAI	TTAA	2 cut(s)	207, 581
SatI	GCNGC	1 cut(s)	79
Sau3AI	GATC	4 cut(s)	6, 73, 523, 687
Sau96I	GGNCC	1 cut(s)	302
SchI	GAGTC	2 cut(s)	178, 437
SetI	ASST	7 cut(s)	28, 96, 219, 228, 299, 478, 678
SfaNI	GCATC	2 cut(s)	166, 431
SinI	GGWCC	1 cut(s)	302
SmiMI	CAYNNNNRTG	1 cut(s)	558
SmlI	CTYRAG	1 cut(s)	501
SmoI	CTYRAG	1 cut(s)	501
Sse9I	AATT	1 cut(s)	482
SsiI	CCGC	2 cut(s)	79, 607
SspMI	CTAG	1 cut(s)	264
StyI	CCWWGG	2 cut(s)	384, 624
TaaI	ACNGT	3 cut(s)	496, 533, 637
TaqI	TCGA	3 cut(s)	5, 12, 526
TaqII	GACCGA	1 cut(s)	143
TasI	AATT	1 cut(s)	482
TatI	WGTACW	1 cut(s)	362
TauI	GCSGC	1 cut(s)	81
TfiI	GAWTC	1 cut(s)	371
Tru1I	TTAA	2 cut(s)	207, 581
Tru9I	TTAA	2 cut(s)	207, 581
TscAI	CASTG	2 cut(s)	424, 525
TseFI	GTSAC	1 cut(s)	652
Tsp45I	GTSAC	1 cut(s)	652
TspDTI	ATGAA	4 cut(s)	260, 301, 346, 357
TspRI	CASTG	2 cut(s)	424, 525
VpaK11BI	GGWCC	1 cut(s)	302
XceI	RCATGY	1 cut(s)	472
XmnI	GAANNNNTTC	1 cut(s)	56
XspI	CTAG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.