Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003233

Physical Location & Seq

Genomic Coordinates Forward (+)

48135784 .. 48137871

Gene Structure 2088 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003407

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGTCGGCGATGGAGATCAATAGTTCAATTTCGTGCCCTTCAACTCCTTGTTGGATCTCCGAGAGGCCTTTCCTCACTGACCGCTTCCATCAGTTTGTGCAGAAAACCAAATGGACGTCACGTGTCGCCACCGATACCAAGGATTCCCATACTGTGGGATTCCAAGATTCCATTGGCTGTTACAATGCTGCTGTTCAGAGGCTTATGTTTAAGCACAAGTTGTACCAGCTAAGGGAAGAGAGGGATATGAAGCCTGAGACTTTTGCTAGCCTCGTCTCAGCTATTATCTATTATCTACGAGAAAAGGCTAAGGCCATGGCTGGTGATACTGCTGTAAGGTCATTGCTAGAAAAGATGGCTGAATGTGCTAGCAATGCGTGCGTGGGTATATTAGAGAGGTGGGTATATGAAGGACTCATTGATGATCCTTACGGTGAATTTTTCATTGCTGAGAACAAATCTCTTCAAAAGGAAAGCCTCAAGATTATGAAGCCAAGTATTGGAGGCAACGTTACAGCCTTAAGGATGGAAGTCCTAGCTTTCTTGCAAATATTGCCGGGACAATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000278 GO:0000280 GO:0000923 GO:0000930 GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0007051 GO:0007052 GO:0007098 GO:0008092 GO:0008150 GO:0008275 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0031023 GO:0031109 GO:0031122 GO:0031974 GO:0031981 GO:0032153 GO:0032155 GO:0032991 GO:0034622 GO:0043015 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0046785 GO:0048285 GO:0051225 GO:0051258 GO:0051298 GO:0051321 GO:0051415 GO:0051418 GO:0065003 GO:0070013 GO:0070925 GO:0071840 GO:0090307 GO:0097435 GO:0140014 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spc97_Spc98

Protein Analysis

190

Amino Acids

21.45

Weight (kDa)

7.61

Isoelectric Point (pI)

46.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCP_N_terminal	PF17681	94 - 160	5.5e-14	Gamma tubulin complex component N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21720 AT1G77440 AT1G77440
fragaria_vesca	FvH4_2g27460
malus_domestica	MD00G1028400.v1.1 MD15G1344700.v1.1
prunus_persica	Prupe.1G492900_v2.0.a1
pyrus_communis	pycom08g13680 pycom15g30930
rosa_chinensis	RchiOBHm_Chr2g0103031 RchiOBHm_Chr2g0140351 RchiOBHm_Chr4g0425031 RchiOBHm_Chr5g0069521 RchiOBHm_Chr6g0296301
rosa_laevigata	RLG00000003407 RLG00000011708 RLG00000019374
rosa_multiflora	Rmu_co8088830.1_g000001 Rmu_sc0000388.1_g000016 Rmu_sc0004708.1_g000006 Rmu_sc0022551.1_g000001
rosa_roxburghii	Rroxscaffold_2G00139980 Rroxscaffold_7G00171650 Rroxscaffold_7G00178420
rosa_rugosa	Rorug02G0111500 Rorug04G0057000 Rorug05G0263600 Rorug06G0260800
rosa_samantha	Rh1BG051400 Rh2CG166500 Rh6BG194900 Rh6BG380500 Rh6DG172500 Rh7DG016200
rosa_wichuraiana	Rw2G012490 Rw4G002730 Rw6G032480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	119
AccB7I	CCANNNNNTGG	2 cut(s)	154, 500
AciI	CCGC	1 cut(s)	82
AclI	AACGTT	1 cut(s)	510
AclWI	GGATC	2 cut(s)	62, 419
AcsI	RAATTY	1 cut(s)	437
AcvI	CACGTG	1 cut(s)	122
AcyI	GRCGYC	1 cut(s)	116
AfaI	GTAC	1 cut(s)	224
AfiI	CCNNNNNNNGG	3 cut(s)	154, 232, 500
AflII	CTTAAG	1 cut(s)	520
AflIII	ACRYGT	1 cut(s)	121
AgsI	TTSAA	3 cut(s)	27, 42, 467
AluBI	AGCT	3 cut(s)	229, 281, 539
AluI	AGCT	3 cut(s)	229, 281, 539
Alw26I	GTCTC	2 cut(s)	251, 280
AlwI	GGATC	2 cut(s)	62, 419
AoxI	GGCC	2 cut(s)	65, 312
ApeKI	GCWGC	1 cut(s)	188
ApoI	RAATTY	1 cut(s)	437
AsuC2I	CCSGG	1 cut(s)	558
AsuHPI	GGTGA	2 cut(s)	335, 446
AsuNHI	GCTAGC	2 cut(s)	266, 368
BaeGI	GKGCMC	1 cut(s)	38
BaeI	ACNNNNGTAYC	2 cut(s)	318, 351
BbrPI	CACGTG	1 cut(s)	122
BbvI	GCAGC	1 cut(s)	175
BccI	CCATC	4 cut(s)	4, 96, 349, 520
BcnI	CCSGG	1 cut(s)	558
BcoDI	GTCTC	2 cut(s)	251, 280
BfaI	CTAG	4 cut(s)	267, 347, 369, 536
BfrI	CTTAAG	1 cut(s)	520
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
Bme1390I	CCNGG	1 cut(s)	558
BmrFI	CCNGG	1 cut(s)	558
BmtI	GCTAGC	2 cut(s)	270, 372
Bpu10I	CCTNAGC	2 cut(s)	230, 309
BpuEI	CTTGAG	1 cut(s)	464
BpuMI	CCSGG	1 cut(s)	558
BsaAI	YACGTR	1 cut(s)	122
BsaBI	GATNNNNATC	1 cut(s)	14
BsaHI	GRCGYC	1 cut(s)	116
BsaJI	CCNNGG	2 cut(s)	138, 315
BsaXI	ACNNNNNCTCC	2 cut(s)	495, 525
Bsc4I	CCNNNNNNNGG	3 cut(s)	154, 232, 500
Bse3DI	GCAATG	3 cut(s)	341, 379, 444
Bse8I	GATNNNNATC	1 cut(s)	14
BseDI	CCNNGG	2 cut(s)	138, 315
BseGI	GGATG	1 cut(s)	531
BseJI	GATNNNNATC	1 cut(s)	14
BseLI	CCNNNNNNNGG	3 cut(s)	154, 232, 500
BseMI	GCAATG	3 cut(s)	341, 379, 444
BseMII	CTCAG	3 cut(s)	246, 291, 441
BseSI	GKGCMC	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	175
BsgI	GTGCAG	1 cut(s)	119
BshFI	GGCC	2 cut(s)	67, 314
BsiSI	CCGG	1 cut(s)	557
BslI	CCNNNNNNNGG	3 cut(s)	154, 232, 500
BsmAI	GTCTC	2 cut(s)	251, 280
BsmBI	CGTCTC	1 cut(s)	280
BsnI	GGCC	2 cut(s)	67, 314
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	3 cut(s)	15, 54, 424
Bsp19I	CCATGG	1 cut(s)	315
BspACI	CCGC	1 cut(s)	82
BspANI	GGCC	2 cut(s)	67, 314
BspCNI	CTCAG	3 cut(s)	247, 290, 442
BspOI	GCTAGC	2 cut(s)	270, 372
BspPI	GGATC	2 cut(s)	62, 419
BspTI	CTTAAG	1 cut(s)	520
BsrDI	GCAATG	3 cut(s)	341, 379, 444
BssECI	CCNNGG	2 cut(s)	138, 315
BssMI	GATC	3 cut(s)	15, 54, 424
BssNI	GRCGYC	1 cut(s)	116
BssT1I	CCWWGG	2 cut(s)	138, 315
Bst4CI	ACNGT	2 cut(s)	154, 434
Bst6I	CTCTTC	2 cut(s)	231, 468
BstACI	GRCGYC	1 cut(s)	116
BstAFI	CTTAAG	1 cut(s)	520
BstAPI	GCANNNNNTGC	2 cut(s)	378, 553
BstBAI	YACGTR	1 cut(s)	122
BstC8I	GCNNGC	3 cut(s)	268, 370, 379
BstDEI	CTNAG	5 cut(s)	230, 255, 277, 309, 450
BstDSI	CCRYGG	1 cut(s)	315
BstF5I	GGATG	1 cut(s)	531
BstKTI	GATC	3 cut(s)	18, 57, 427
BstMAI	GTCTC	2 cut(s)	251, 280
BstMBI	GATC	3 cut(s)	15, 54, 424
BstMWI	GCNNNNNNNGC	4 cut(s)	365, 374, 378, 553
BstSCI	CCNGG	1 cut(s)	556
BstSLI	GKGCMC	1 cut(s)	38
BstV1I	GCAGC	1 cut(s)	175
BstX2I	RGATCY	1 cut(s)	54
BstYI	RGATCY	1 cut(s)	54
BsuRI	GGCC	2 cut(s)	67, 314
BtgI	CCRYGG	1 cut(s)	315
BtgZI	GCGATG	1 cut(s)	23
BtsCI	GGATG	1 cut(s)	531
BtsIMutI	CAGTG	1 cut(s)	75
Cac8I	GCNNGC	3 cut(s)	268, 370, 379
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	1 cut(s)	316
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	5 cut(s)	230, 255, 277, 309, 450
DpnI	GATC	3 cut(s)	17, 56, 426
DpnII	GATC	3 cut(s)	15, 54, 424
Eam1104I	CTCTTC	2 cut(s)	231, 468
EarI	CTCTTC	2 cut(s)	231, 468
Eco130I	CCWWGG	2 cut(s)	138, 315
Eco147I	AGGCCT	1 cut(s)	67
Eco72I	CACGTG	1 cut(s)	122
EcoT14I	CCWWGG	2 cut(s)	138, 315
ErhI	CCWWGG	2 cut(s)	138, 315
Esp3I	CGTCTC	1 cut(s)	280
FaeI	CATG	1 cut(s)	319
FaiI	YATR	8 cut(s)	150, 206, 248, 317, 389, 406, 408, 488
FatI	CATG	1 cut(s)	315
Fnu4HI	GCNGC	1 cut(s)	189
FokI	GGATG	1 cut(s)	538
Fsp4HI	GCNGC	1 cut(s)	189
FspBI	CTAG	4 cut(s)	267, 347, 369, 536
GluI	GCNGC	1 cut(s)	189
HaeIII	GGCC	2 cut(s)	67, 314
HapII	CCGG	1 cut(s)	557
Hin1I	GRCGYC	1 cut(s)	116
Hin1II	CATG	1 cut(s)	319
HinfI	GANTC	4 cut(s)	143, 159, 167, 414
HpaII	CCGG	1 cut(s)	557
HphI	GGTGA	2 cut(s)	335, 446
Hpy188I	TCNGA	2 cut(s)	61, 198
Hpy188III	TCNNGA	1 cut(s)	481
HpyAV	CCTTC	2 cut(s)	48, 404
HpyCH4III	ACNGT	2 cut(s)	154, 434
HpyCH4IV	ACGT	3 cut(s)	116, 121, 510
HpyCH4V	TGCA	2 cut(s)	100, 547
HpyF10VI	GCNNNNNNNGC	4 cut(s)	365, 374, 378, 553
HpyF3I	CTNAG	5 cut(s)	230, 255, 277, 309, 450
HpySE526I	ACGT	3 cut(s)	116, 121, 510
Hsp92I	GRCGYC	1 cut(s)	116
Hsp92II	CATG	1 cut(s)	319
Kzo9I	GATC	3 cut(s)	15, 54, 424
LpnPI	CCDG	3 cut(s)	239, 267, 306
Lsp1109I	GCAGC	1 cut(s)	175
MaeI	CTAG	4 cut(s)	267, 347, 369, 536
MaeII	ACGT	3 cut(s)	116, 121, 510
MaeIII	GTNAC	3 cut(s)	117, 179, 511
MalI	GATC	3 cut(s)	17, 56, 426
MboI	GATC	3 cut(s)	15, 54, 424
MboII	GAAGA	2 cut(s)	248, 455
MflI	RGATCY	1 cut(s)	54
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	3 cut(s)	27, 437, 563
MlyI	GAGTC	1 cut(s)	408
MmeI	TCCRAC	1 cut(s)	32
MnlI	CCTC	8 cut(s)	57, 83, 192, 234, 281, 390, 488, 497
MseI	TTAA	3 cut(s)	210, 521, 568
MspCI	CTTAAG	1 cut(s)	520
MspI	CCGG	1 cut(s)	557
MspR9I	CCNGG	1 cut(s)	558
MwoI	GCNNNNNNNGC	4 cut(s)	365, 374, 378, 553
NciI	CCSGG	1 cut(s)	558
NcoI	CCATGG	1 cut(s)	315
NdeII	GATC	3 cut(s)	15, 54, 424
NheI	GCTAGC	2 cut(s)	266, 368
NlaIII	CATG	1 cut(s)	319
NmuCI	GTSAC	1 cut(s)	117
PceI	AGGCCT	1 cut(s)	67
PfeI	GAWTC	3 cut(s)	143, 159, 167
PflMI	CCANNNNNTGG	2 cut(s)	154, 500
PkrI	GCNGC	1 cut(s)	190
PleI	GAGTC	1 cut(s)	408
PmaCI	CACGTG	1 cut(s)	122
PmlI	CACGTG	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	408
Ppu21I	YACGTR	1 cut(s)	122
Psp1406I	AACGTT	1 cut(s)	510
PspCI	CACGTG	1 cut(s)	122
PsuI	RGATCY	1 cut(s)	54
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
SaqAI	TTAA	3 cut(s)	210, 521, 568
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	3 cut(s)	15, 54, 424
SchI	GAGTC	1 cut(s)	408
ScrFI	CCNGG	1 cut(s)	558
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	8 cut(s)	119, 124, 231, 283, 341, 401, 513, 541
SmlI	CTYRAG	2 cut(s)	479, 520
SmoI	CTYRAG	2 cut(s)	479, 520
Sse9I	AATT	3 cut(s)	27, 437, 563
SseBI	AGGCCT	1 cut(s)	67
SsiI	CCGC	1 cut(s)	82
SspI	AATATT	1 cut(s)	552
SspMI	CTAG	4 cut(s)	267, 347, 369, 536
StuI	AGGCCT	1 cut(s)	67
StyD4I	CCNGG	1 cut(s)	556
StyI	CCWWGG	2 cut(s)	138, 315
TaaI	ACNGT	2 cut(s)	154, 434
TaiI	ACGT	3 cut(s)	119, 124, 513
TasI	AATT	3 cut(s)	27, 437, 563
TfiI	GAWTC	3 cut(s)	143, 159, 167
Tru1I	TTAA	3 cut(s)	210, 521, 568
Tru9I	TTAA	3 cut(s)	210, 521, 568
TscAI	CASTG	1 cut(s)	82
TseFI	GTSAC	1 cut(s)	117
TseI	GCWGC	1 cut(s)	188
Tsp45I	GTSAC	1 cut(s)	117
TspDTI	ATGAA	4 cut(s)	263, 423, 433, 503
TspRI	CASTG	1 cut(s)	82
Van91I	CCANNNNNTGG	2 cut(s)	154, 500
Vha464I	CTTAAG	1 cut(s)	520
XapI	RAATTY	1 cut(s)	437
XcmI	CCANNNNNNNNNTGG	1 cut(s)	170
XspI	CTAG	4 cut(s)	267, 347, 369, 536
ZraI	GACGTC	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.