Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003233

Physical Location & Seq

Genomic Coordinates Reverse (-)

13056352 .. 13060138

Gene Structure 3787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G012490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGTCAACTACCGTTAATCATTTTCTTTTTGCTGTTGTAATCATGATTAGAGATGAAACTGGTATTGTACAATGTATATATATGTTAGGTATCAATAGTATATCGTCTGTTGCAAGATTGAAGTTACAAGTAACAATGACTACCTGGAAGTTCATTACTTGTTTGTTGATATATATATATATATATATATATATATATATATATATACAGATCCTATCCAGAGCGAGGCATCGCTTTGAAATTTCAGAGCGAGAAGAGAGAGATATGAAACCAAAGACTTGTGCCAGCCTTGTCTCTCCTGTAATTGCTGGATTGGGAGATGATCAACACAAGCAATTCATGCGCACTATGGATTCAATTGGAACTAGCAAAGTAAGTTTGGAACTAGCGAAAATTTTTCATGTTGCTGGCTCTGGGTCAGAGCCCCTTTATGGTCCTGATACGGAGCAAGAGGACTTGTTTGAGCCCATATCTGAAGCATTGCTATCATCAGTAGATCGTGATTGTCTGAGTGAGTGGGGATGCCATTTCTATGTGTTAACACCAACTGAGGTAGAAAGGACTTGTAAGGCACAATGGACTGACCTTGCTGTATATGGCAAATTCCTCGAAATTTCTTCAAGTGGCTGCATTTTCCCCTCTCAAGTTTACTTGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005839 GO:0016020 GO:0019774 GO:0031090 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

219

Amino Acids

24.93

Weight (kDa)

5.38

Isoelectric Point (pI)

34.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21720 AT1G77440 AT1G77440
fragaria_vesca	FvH4_2g27460
malus_domestica	MD00G1028400.v1.1 MD15G1344700.v1.1
prunus_persica	Prupe.1G492900_v2.0.a1
pyrus_communis	pycom08g13680 pycom15g30930
rosa_chinensis	RchiOBHm_Chr2g0103031 RchiOBHm_Chr2g0140351 RchiOBHm_Chr4g0425031 RchiOBHm_Chr5g0069521 RchiOBHm_Chr6g0296301
rosa_laevigata	RLG00000003407 RLG00000011708 RLG00000019374
rosa_multiflora	Rmu_co8088830.1_g000001 Rmu_sc0000388.1_g000016 Rmu_sc0004708.1_g000006 Rmu_sc0022551.1_g000001
rosa_roxburghii	Rroxscaffold_2G00139980 Rroxscaffold_7G00171650 Rroxscaffold_7G00178420
rosa_rugosa	Rorug02G0111500 Rorug04G0057000 Rorug05G0263600 Rorug06G0260800
rosa_samantha	Rh1BG051400 Rh2CG166500 Rh6BG194900 Rh6BG380500 Rh6DG172500 Rh7DG016200
rosa_wichuraiana	Rw2G012490 Rw4G002730 Rw6G032480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	344
AclWI	GGATC	1 cut(s)	205
AcsI	RAATTY	4 cut(s)	240, 393, 602, 612
AcuI	CTGAAG	1 cut(s)	495
AfaI	GTAC	1 cut(s)	69
AfiI	CCNNNNNNNGG	2 cut(s)	225, 431
AgsI	TTSAA	4 cut(s)	121, 239, 357, 621
AjnI	CCWGG	1 cut(s)	143
Alw26I	GTCTC	1 cut(s)	298
AlwI	GGATC	1 cut(s)	205
ApeKI	GCWGC	1 cut(s)	627
ApoI	RAATTY	4 cut(s)	240, 393, 602, 612
AspLEI	GCGC	1 cut(s)	345
AspS9I	GGNCC	1 cut(s)	434
AvaII	GGWCC	1 cut(s)	434
BanII	GRGCYC	2 cut(s)	426, 468
BbvI	GCAGC	1 cut(s)	614
BcgI	CGANNNNNNTGC	2 cut(s)	589, 623
BciT130I	CCWGG	1 cut(s)	145
BclI	TGATCA	1 cut(s)	322
BcoDI	GTCTC	1 cut(s)	298
BfaI	CTAG	2 cut(s)	366, 386
BisI	GCNGC	1 cut(s)	628
BlsI	GCNGC	1 cut(s)	629
Bme1390I	CCNGG	1 cut(s)	145
Bme18I	GGWCC	1 cut(s)	434
BmgT120I	GGNCC	1 cut(s)	434
BmrFI	CCNGG	1 cut(s)	145
BmsI	GCATC	2 cut(s)	238, 512
BpuEI	CTTGAG	1 cut(s)	627
Bsc4I	CCNNNNNNNGG	2 cut(s)	225, 431
Bse1I	ACTGG	1 cut(s)	64
Bse3DI	GCAATG	1 cut(s)	479
BseBI	CCWGG	1 cut(s)	145
BseGI	GGATG	1 cut(s)	527
BseLI	CCNNNNNNNGG	2 cut(s)	225, 431
BseMI	GCAATG	1 cut(s)	479
BseMII	CTCAG	2 cut(s)	500, 540
BseNI	ACTGG	1 cut(s)	64
BseXI	GCAGC	1 cut(s)	614
BslI	CCNNNNNNNGG	2 cut(s)	225, 431
BsmAI	GTCTC	1 cut(s)	298
Bsp1286I	GDGCHC	2 cut(s)	426, 468
Bsp1407I	TGTACA	1 cut(s)	67
Bsp143I	GATC	3 cut(s)	210, 322, 496
BspCNI	CTCAG	2 cut(s)	501, 541
BspHI	TCATGA	1 cut(s)	42
BspPI	GGATC	1 cut(s)	205
BsrDI	GCAATG	1 cut(s)	479
BsrGI	TGTACA	1 cut(s)	67
BsrI	ACTGG	1 cut(s)	64
BssMI	GATC	3 cut(s)	210, 322, 496
Bst2UI	CCWGG	1 cut(s)	145
Bst4CI	ACNGT	1 cut(s)	13
Bst6I	CTCTTC	1 cut(s)	249
BstAPI	GCANNNNNTGC	1 cut(s)	340
BstAUI	TGTACA	1 cut(s)	67
BstC8I	GCNNGC	2 cut(s)	286, 409
BstDEI	CTNAG	2 cut(s)	509, 549
BstF5I	GGATG	1 cut(s)	527
BstHHI	GCGC	1 cut(s)	345
BstKTI	GATC	3 cut(s)	213, 325, 499
BstMAI	GTCTC	1 cut(s)	298
BstMBI	GATC	3 cut(s)	210, 322, 496
BstMWI	GCNNNNNNNGC	1 cut(s)	340
BstNI	CCWGG	1 cut(s)	145
BstSCI	CCNGG	1 cut(s)	143
BstV1I	GCAGC	1 cut(s)	614
BstX2I	RGATCY	1 cut(s)	210
BstYI	RGATCY	1 cut(s)	210
BtgZI	GCGATG	1 cut(s)	215
BtsCI	GGATG	1 cut(s)	527
Cac8I	GCNNGC	2 cut(s)	286, 409
CciI	TCATGA	1 cut(s)	42
CfoI	GCGC	1 cut(s)	345
Cfr13I	GGNCC	1 cut(s)	434
Csp6I	GTAC	1 cut(s)	68
CviAII	CATG	3 cut(s)	43, 340, 401
CviJI	RGCY	5 cut(s)	288, 411, 424, 466, 627
CviKI_1	RGCY	5 cut(s)	288, 411, 424, 466, 627
CviQI	GTAC	1 cut(s)	68
DdeI	CTNAG	2 cut(s)	509, 549
DpnI	GATC	3 cut(s)	212, 324, 498
DpnII	GATC	3 cut(s)	210, 322, 496
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
Eco24I	GRGCYC	2 cut(s)	426, 468
Eco47I	GGWCC	1 cut(s)	434
Eco57I	CTGAAG	1 cut(s)	495
EcoRII	CCWGG	1 cut(s)	143
EcoT38I	GRGCYC	2 cut(s)	426, 468
FaeI	CATG	3 cut(s)	46, 343, 404
FatI	CATG	3 cut(s)	42, 339, 400
FbaI	TGATCA	1 cut(s)	322
Fnu4HI	GCNGC	1 cut(s)	628
FokI	GGATG	1 cut(s)	534
FriOI	GRGCYC	2 cut(s)	426, 468
Fsp4HI	GCNGC	1 cut(s)	628
FspAI	RTGCGCAY	1 cut(s)	344
FspBI	CTAG	2 cut(s)	366, 386
FspI	TGCGCA	1 cut(s)	344
GlaI	GCGC	1 cut(s)	344
GluI	GCNGC	1 cut(s)	628
HhaI	GCGC	1 cut(s)	345
Hin1II	CATG	3 cut(s)	46, 343, 404
Hin6I	GCGC	1 cut(s)	343
HinP1I	GCGC	1 cut(s)	343
HincII	GTYRAC	2 cut(s)	6, 540
HindII	GTYRAC	2 cut(s)	6, 540
HinfI	GANTC	1 cut(s)	353
HpaI	GTTAAC	1 cut(s)	540
Hpy166II	GTNNAC	3 cut(s)	6, 540, 649
Hpy188I	TCNGA	4 cut(s)	247, 421, 475, 510
Hpy188III	TCNNGA	4 cut(s)	43, 219, 437, 500
Hpy8I	GTNNAC	3 cut(s)	6, 540, 649
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4V	TGCA	2 cut(s)	113, 630
HpyF10VI	GCNNNNNNNGC	1 cut(s)	340
HpyF3I	CTNAG	2 cut(s)	509, 549
Hsp92II	CATG	3 cut(s)	46, 343, 404
HspAI	GCGC	1 cut(s)	343
Ksp22I	TGATCA	1 cut(s)	322
KspAI	GTTAAC	1 cut(s)	540
Kzo9I	GATC	3 cut(s)	210, 322, 496
LmnI	GCTCC	1 cut(s)	445
Lsp1109I	GCAGC	1 cut(s)	614
LweI	GCATC	2 cut(s)	238, 512
MaeI	CTAG	2 cut(s)	366, 386
MaeIII	GTNAC	2 cut(s)	123, 130
MalI	GATC	3 cut(s)	212, 324, 498
MboI	GATC	3 cut(s)	210, 322, 496
MboII	GAAGA	2 cut(s)	266, 609
MfeI	CAATTG	1 cut(s)	357
MflI	RGATCY	1 cut(s)	210
MhlI	GDGCHC	2 cut(s)	426, 468
MluCI	AATT	7 cut(s)	240, 303, 335, 357, 393, 602, 612
MnlI	CCTC	5 cut(s)	219, 445, 544, 617, 649
MseI	TTAA	2 cut(s)	15, 539
MslI	CAYNNNNRTG	1 cut(s)	531
MspR9I	CCNGG	1 cut(s)	145
MunI	CAATTG	1 cut(s)	357
MvaI	CCWGG	1 cut(s)	145
MwoI	GCNNNNNNNGC	1 cut(s)	340
NdeII	GATC	3 cut(s)	210, 322, 496
NlaIII	CATG	3 cut(s)	46, 343, 404
NsbI	TGCGCA	1 cut(s)	344
PagI	TCATGA	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	353
PkrI	GCNGC	1 cut(s)	629
Psp6I	CCWGG	1 cut(s)	143
PspGI	CCWGG	1 cut(s)	143
PspPI	GGNCC	1 cut(s)	434
PsuI	RGATCY	1 cut(s)	210
RsaI	GTAC	1 cut(s)	69
RsaNI	GTAC	1 cut(s)	68
RseI	CAYNNNNRTG	1 cut(s)	531
SaqAI	TTAA	2 cut(s)	15, 539
SatI	GCNGC	1 cut(s)	628
Sau3AI	GATC	3 cut(s)	210, 322, 496
Sau96I	GGNCC	1 cut(s)	434
ScrFI	CCNGG	1 cut(s)	145
SduI	GDGCHC	2 cut(s)	426, 468
SetI	ASST	4 cut(s)	91, 146, 555, 588
SfaNI	GCATC	2 cut(s)	238, 512
SinI	GGWCC	1 cut(s)	434
SmiMI	CAYNNNNRTG	1 cut(s)	531
SmlI	CTYRAG	1 cut(s)	642
SmoI	CTYRAG	1 cut(s)	642
Sse9I	AATT	7 cut(s)	240, 303, 335, 357, 393, 602, 612
SspMI	CTAG	2 cut(s)	366, 386
StyD4I	CCNGG	1 cut(s)	143
TaaI	ACNGT	1 cut(s)	13
TaqI	TCGA	1 cut(s)	609
TasI	AATT	7 cut(s)	240, 303, 335, 357, 393, 602, 612
TatI	WGTACW	1 cut(s)	67
TfiI	GAWTC	1 cut(s)	353
Tru1I	TTAA	2 cut(s)	15, 539
Tru9I	TTAA	2 cut(s)	15, 539
TseI	GCWGC	1 cut(s)	627
TspDTI	ATGAA	5 cut(s)	69, 142, 281, 328, 389
TspGWI	ACGGA	1 cut(s)	458
VpaK11BI	GGWCC	1 cut(s)	434
XapI	RAATTY	4 cut(s)	240, 393, 602, 612
XspI	CTAG	2 cut(s)	366, 386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.