AT1G28110

Belongs to the peptidase S10 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
9803641 .. 9806899
3259 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G28110.2

Sequence Viewer

Length: 1386 bp
ATGTCTCCTCTCCAATGGCTCACAATCTCTTTTGCTCTAATTATCTTCCACTCTCTCACGGTCTCCTCTAGTGTTCTGTCCCACTCAGATCGAGTCACCCGTTTACCCGGTCAACCCCGGGTCGGATTTCAGCAATACTCCGGTTATGTCACTGTCGACGACAAGAAACAGAGAGCTCTGTTTTACTACTTCGCCGAGGCAGAAACCAATCCATCCTCTAAACCTCTCGTCCTCTGGCTCAATGGAGGACCTGGATGTTCATCTTTGGGCGTTGGGGCATTCTCAGAAAACGGACCATTTAGACCAAAAGGACCAATCTTGGTCAAGAATCAGCATAGCTGGAACCAAGAGGCTAATATGTTGTATCTAGAGACACCTGTTGGAGTTGGATTCTCTTATTCAACTCAAAGCTCCCATTATGAGGGTGTTAATGATAAGATCACTGCAAGAGACAACCTTGTGTTCTTGCAAAGATGGTTTCTCAAATTCCCTCATTACCTCAATCGAAGTCTCTTCATCACTGGTGAAAGTTATGCTGGCCATTATGTTCCTCAACTAGCTGAGCTTATGATTCAGTACAACAAGAAGCACCATTTGTTCAATCTGAGAGGAATTGCTATTGGCAATCCAGTTTTGGAGTTTGCGACAGATTTCAACTCGCGAGCTGAGTACTTCTGGTCTCATGGCTTGATATCGGATTCGACTTACAAAATGTTCACATCTTACTGTAATTACTCGCGCTATGTGAGTGAGTACTATAGAGGGTCAATGTCTAGTATGTGCTCTAAGGTGATGAGTCAAGTTAGCACTGAGACGAGTCGATTTGTTGATAAATATGATGTCACTCTCGATGTTTGCATTCCCTCTGTGCTATCTCAATCCAAAGTAGTAAGCCCCAATCAAGTGGGAGAATCTGTGGATGTTTGTGTCGAAGATGAGACGGTCAACTATCTAAACCGAAGAGATGTGCAGGAAGCTCTTCATGCTCGGCTCATAGGAGTACGTGAATGGACAGTTTGCAGCAATGTGCTTGATTACCAATTGCTTGATGTGGAAATACCAACGATTAATATCGTAGGGAGCCTTGTTAAAGCTGGAGTTCCAGTTCTTGTCTACAGTGGAGATCAAGATTCTGTGATCCCGTTGACAGGAAGTAGAACCTTAGTGAGTAGATTGGCCAAACAATTGGGACTGAGAACAAGTGTACCTTATCGAGTCTGGTTTGCAGGCCAACAGGTTGGAGGATGGACTCAAGTCTATGGAAATGTCTTGTCCTTTGCAACAGTGCGAGGAGCTTCACACGAGGTCCCATTCTCACAGCCTGAGAGATCACTTGTCCTGTTCAAGGCGTTCTTGGACGGCCATCCTCTTCCTGAAGAATTCTGA

Protein Analysis

461

Amino Acids

51.8

Weight (kDa)

6.86

Isoelectric Point (pI)

40.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 36 - 454 1.6e-127 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 156, 1113
AccII CGCG 2 cut(s) 661, 739
AclWI GGATC 1 cut(s) 1132
AcoI YGGCCR 3 cut(s) 538, 1176, 1360
AcsI RAATTY 2 cut(s) 485, 1379
AfaI GTAC 5 cut(s) 578, 671, 755, 1002, 1206
AfiI CCNNNNNNNGG 4 cut(s) 122, 421, 1148, 1345
AgsI TTSAA 4 cut(s) 402, 601, 655, 1345
AjnI CCWGG 1 cut(s) 250
AloI GAACNNNNNNTCC 2 cut(s) 1089, 1121
AluBI AGCT 9 cut(s) 176, 339, 411, 560, 565, 665, 977, 1094, 1295
AluI AGCT 9 cut(s) 176, 339, 411, 560, 565, 665, 977, 1094, 1295
Alw21I GWGCWC 2 cut(s) 178, 785
Alw26I GTCTC 8 cut(s) 9, 67, 365, 444, 515, 684, 806, 932
AlwI GGATC 1 cut(s) 1132
Ama87I CYCGRG 1 cut(s) 117
AoxI GGCC 4 cut(s) 538, 1176, 1228, 1360
ApeKI GCWGC 1 cut(s) 1020
ApoI RAATTY 2 cut(s) 485, 1379
AseI ATTAAT 1 cut(s) 1068
Asp700I GAANNNNTTC 1 cut(s) 978
AspLEI GCGC 1 cut(s) 741
AspS9I GGNCC 4 cut(s) 248, 293, 311, 1306
AsuC2I CCSGG 3 cut(s) 108, 118, 119
AsuHPI GGTGA 3 cut(s) 88, 536, 802
AvaI CYCGRG 1 cut(s) 117
AvaII GGWCC 4 cut(s) 248, 293, 311, 1306
BaeI ACNNNNGTAYC 2 cut(s) 1188, 1221
BalI TGGCCA 2 cut(s) 540, 1178
BanII GRGCYC 1 cut(s) 178
BauI CACGAG 1 cut(s) 1301
Bbv12I GWGCWC 2 cut(s) 178, 785
BbvI GCAGC 1 cut(s) 1032
BccI CCATC 4 cut(s) 220, 468, 1239, 1371
BceAI ACGGC 1 cut(s) 1375
BciT130I CCWGG 1 cut(s) 252
BcnI CCSGG 3 cut(s) 108, 118, 119
BcoDI GTCTC 8 cut(s) 9, 67, 365, 444, 515, 684, 806, 932
BfaI CTAG 4 cut(s) 69, 368, 557, 774
BfmI CTRYAG 2 cut(s) 757, 1114
BisI GCNGC 1 cut(s) 1021
BlpI GCTNAGC 1 cut(s) 561
BlsI GCNGC 1 cut(s) 1022
BmcAI AGTACT 2 cut(s) 671, 755
Bme1390I CCNGG 4 cut(s) 108, 118, 119, 252
Bme18I GGWCC 4 cut(s) 248, 293, 311, 1306
BmeT110I CYCGRG 1 cut(s) 117
BmgT120I GGNCC 4 cut(s) 248, 293, 311, 1306
BmiI GGNNCC 3 cut(s) 344, 1082, 1308
BmrFI CCNGG 4 cut(s) 108, 118, 119, 252
BoxI GACNNNNGTC 1 cut(s) 1253
BpmI CTGGAG 1 cut(s) 1116
Bpu1102I GCTNAGC 1 cut(s) 561
BpuEI CTTGAG 1 cut(s) 1236
BpuMI CCSGG 3 cut(s) 108, 118, 119
BsaAI YACGTR 1 cut(s) 1004
BsaBI GATNNNNATC 2 cut(s) 259, 1070
BsaI GGTCTC 2 cut(s) 67, 684
BsaJI CCNNGG 3 cut(s) 116, 117, 195
BsaWI WCCGGW 1 cut(s) 140
BsaXI ACNNNNNCTCC 4 cut(s) 900, 930, 1089, 1119
Bsc4I CCNNNNNNNGG 4 cut(s) 122, 421, 1148, 1345
Bse1I ACTGG 3 cut(s) 526, 629, 1103
Bse3DI GCAATG 1 cut(s) 1030
Bse8I GATNNNNATC 2 cut(s) 259, 1070
BseBI CCWGG 1 cut(s) 252
BseDI CCNNGG 3 cut(s) 116, 117, 195
BseGI GGATG 5 cut(s) 212, 260, 925, 1250, 1363
BseJI GATNNNNATC 2 cut(s) 259, 1070
BseLI CCNNNNNNNGG 4 cut(s) 122, 421, 1148, 1345
BseMI GCAATG 1 cut(s) 1030
BseMII CTCAG 8 cut(s) 99, 297, 552, 596, 657, 801, 1184, 1314
BseNI ACTGG 3 cut(s) 526, 629, 1103
BseRI GAGGAG 2 cut(s) 55, 1305
BseXI GCAGC 1 cut(s) 1032
BsgI GTGCAG 1 cut(s) 989
Bsh1236I CGCG 2 cut(s) 661, 739
BshFI GGCC 4 cut(s) 540, 1178, 1230, 1362
BsiHKAI GWGCWC 2 cut(s) 178, 785
BsiHKCI CYCGRG 1 cut(s) 117
BsiSI CCGG 3 cut(s) 108, 118, 141
BslFI GGGAC 3 cut(s) 64, 1203, 1292
BslI CCNNNNNNNGG 4 cut(s) 122, 421, 1148, 1345
BsmAI GTCTC 8 cut(s) 9, 67, 365, 444, 515, 684, 806, 932
BsmBI CGTCTC 2 cut(s) 806, 932
BsmFI GGGAC 3 cut(s) 64, 1203, 1292
BsmI GAATGC 2 cut(s) 278, 858
BsnI GGCC 4 cut(s) 540, 1178, 1230, 1362
Bso31I GGTCTC 2 cut(s) 67, 684
BsoBI CYCGRG 1 cut(s) 117
Bsp1286I GDGCHC 2 cut(s) 178, 785
Bsp143I GATC 5 cut(s) 88, 438, 1123, 1137, 1328
Bsp1720I GCTNAGC 1 cut(s) 561
Bsp68I TCGCGA 1 cut(s) 661
BspANI GGCC 4 cut(s) 540, 1178, 1230, 1362
BspCNI CTCAG 8 cut(s) 98, 296, 553, 597, 658, 802, 1185, 1315
BspFNI CGCG 2 cut(s) 661, 739
BspLI GGNNCC 3 cut(s) 344, 1082, 1308
BspPI GGATC 1 cut(s) 1132
BspQI GCTCTTC 1 cut(s) 984
BspTNI GGTCTC 2 cut(s) 67, 684
BsrDI GCAATG 1 cut(s) 1030
BsrI ACTGG 3 cut(s) 526, 629, 1103
BssECI CCNNGG 3 cut(s) 116, 117, 195
BssMI GATC 5 cut(s) 88, 438, 1123, 1137, 1328
BssSI CACGAG 1 cut(s) 1301
Bst2BI CACGAG 1 cut(s) 1301
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 7 cut(s) 61, 154, 728, 943, 1015, 1118, 1285
Bst6I CTCTTC 4 cut(s) 518, 955, 984, 1374
BstBAI YACGTR 1 cut(s) 1004
BstC8I GCNNGC 3 cut(s) 538, 663, 1228
BstENI CCTNNNNNAGG 1 cut(s) 1343
BstF5I GGATG 5 cut(s) 212, 260, 925, 1250, 1363
BstFNI CGCG 2 cut(s) 661, 739
BstHHI GCGC 1 cut(s) 741
BstKTI GATC 5 cut(s) 91, 441, 1126, 1140, 1331
BstMAI GTCTC 8 cut(s) 9, 67, 365, 444, 515, 684, 806, 932
BstMBI GATC 5 cut(s) 88, 438, 1123, 1137, 1328
BstMWI GCNNNNNNNGC 1 cut(s) 983
BstNI CCWGG 1 cut(s) 252
BstPAI GACNNNNGTC 1 cut(s) 1253
BstSCI CCNGG 4 cut(s) 106, 116, 117, 250
BstSFI CTRYAG 2 cut(s) 757, 1114
BstUI CGCG 2 cut(s) 661, 739
BstV1I GCAGC 1 cut(s) 1032
BstXI CCANNNNNNTGG 3 cut(s) 904, 1186, 1238
BsuRI GGCC 4 cut(s) 540, 1178, 1230, 1362
BtsCI GGATG 5 cut(s) 212, 260, 925, 1250, 1363
BtsI GCAGTG 1 cut(s) 441
BtsIMutI CAGTG 6 cut(s) 150, 441, 519, 807, 1123, 1290
BtuMI TCGCGA 1 cut(s) 661
Cac8I GCNNGC 3 cut(s) 538, 663, 1228
CfoI GCGC 1 cut(s) 741
Cfr13I GGNCC 4 cut(s) 248, 293, 311, 1306
Cfr9I CCCGGG 1 cut(s) 117
Csp6I GTAC 5 cut(s) 577, 670, 754, 1001, 1205
CviAII CATG 2 cut(s) 683, 983
CviQI GTAC 5 cut(s) 577, 670, 754, 1001, 1205
DpnI GATC 5 cut(s) 90, 440, 1125, 1139, 1330
DpnII GATC 5 cut(s) 88, 438, 1123, 1137, 1328
EaeI YGGCCR 3 cut(s) 538, 1176, 1360
Eam1104I CTCTTC 4 cut(s) 518, 955, 984, 1374
EarI CTCTTC 4 cut(s) 518, 955, 984, 1374
Ecl136II GAGCTC 1 cut(s) 176
Eco24I GRGCYC 1 cut(s) 178
Eco31I GGTCTC 2 cut(s) 67, 684
Eco32I GATATC 1 cut(s) 693
Eco47I GGWCC 4 cut(s) 248, 293, 311, 1306
Eco53kI GAGCTC 1 cut(s) 176
Eco88I CYCGRG 1 cut(s) 117
EcoICRI GAGCTC 1 cut(s) 176
EcoNI CCTNNNNNAGG 1 cut(s) 1343
EcoO109I RGGNCCY 2 cut(s) 248, 1306
EcoRI GAATTC 1 cut(s) 1379
EcoRII CCWGG 1 cut(s) 250
EcoRV GATATC 1 cut(s) 693
EcoT38I GRGCYC 1 cut(s) 178
Esp3I CGTCTC 2 cut(s) 806, 932
FaeI CATG 2 cut(s) 686, 986
FalI AAGNNNNNCTT 4 cut(s) 1192, 1224, 1337, 1369
FaqI GGGAC 3 cut(s) 64, 1203, 1292
FatI CATG 2 cut(s) 682, 982
FblI GTMKAC 2 cut(s) 156, 1113
Fnu4HI GCNGC 1 cut(s) 1021
FokI GGATG 5 cut(s) 199, 267, 932, 1257, 1350
FriOI GRGCYC 1 cut(s) 178
Fsp4HI GCNGC 1 cut(s) 1021
FspBI CTAG 4 cut(s) 69, 368, 557, 774
GlaI GCGC 1 cut(s) 740
GluI GCNGC 1 cut(s) 1021
GsuI CTGGAG 1 cut(s) 1116
HaeIII GGCC 4 cut(s) 540, 1178, 1230, 1362
HapII CCGG 3 cut(s) 108, 118, 141
HhaI GCGC 1 cut(s) 741
Hin1II CATG 2 cut(s) 686, 986
Hin6I GCGC 1 cut(s) 739
HinP1I GCGC 1 cut(s) 739
HincII GTYRAC 4 cut(s) 113, 157, 946, 1146
HindII GTYRAC 4 cut(s) 113, 157, 946, 1146
HpaII CCGG 3 cut(s) 108, 118, 141
HphI GGTGA 3 cut(s) 88, 536, 802
Hpy166II GTNNAC 8 cut(s) 104, 113, 157, 717, 946, 1114, 1146, 1205
Hpy188I TCNGA 6 cut(s) 88, 125, 286, 606, 697, 1385
Hpy188III TCNNGA 6 cut(s) 325, 368, 660, 848, 1127, 1373
Hpy8I GTNNAC 8 cut(s) 104, 113, 157, 717, 946, 1114, 1146, 1205
Hpy99I CGWCG 1 cut(s) 161
HpyCH4III ACNGT 7 cut(s) 61, 154, 728, 943, 1015, 1118, 1285
HpyCH4IV ACGT 1 cut(s) 1003
HpyCH4V TGCA 7 cut(s) 446, 469, 858, 970, 1020, 1226, 1280
HpyF10VI GCNNNNNNNGC 1 cut(s) 983
HpySE526I ACGT 1 cut(s) 1003
Hsp92II CATG 2 cut(s) 686, 986
HspAI GCGC 1 cut(s) 739
Kzo9I GATC 5 cut(s) 88, 438, 1123, 1137, 1328
LguI GCTCTTC 1 cut(s) 984
LmnI GCTCC 3 cut(s) 416, 1080, 1292
Lsp1109I GCAGC 1 cut(s) 1032
MaeI CTAG 4 cut(s) 69, 368, 557, 774
MaeII ACGT 1 cut(s) 1003
MaeIII GTNAC 3 cut(s) 94, 148, 841
MalI GATC 5 cut(s) 90, 440, 1125, 1139, 1330
MboI GATC 5 cut(s) 88, 438, 1123, 1137, 1328
MboII GAAGA 6 cut(s) 37, 505, 944, 971, 972, 1361
MfeI CAATTG 2 cut(s) 1040, 1184
MhlI GDGCHC 2 cut(s) 178, 785
MlsI TGGCCA 2 cut(s) 540, 1178
MluCI AATT 7 cut(s) 39, 485, 612, 730, 1040, 1184, 1379
MluNI TGGCCA 2 cut(s) 540, 1178
MlyI GAGTC 5 cut(s) 102, 805, 826, 1224, 1243
MmeI TCCRAC 4 cut(s) 103, 361, 367, 1219
Mox20I TGGCCA 2 cut(s) 540, 1178
MroXI GAANNNNTTC 1 cut(s) 978
MscI TGGCCA 2 cut(s) 540, 1178
MseI TTAA 3 cut(s) 429, 1068, 1089
Msp20I TGGCCA 2 cut(s) 540, 1178
MspI CCGG 3 cut(s) 108, 118, 141
MspR9I CCNGG 4 cut(s) 108, 118, 119, 252
MunI CAATTG 2 cut(s) 1040, 1184
Mva1269I GAATGC 2 cut(s) 278, 858
MvaI CCWGG 1 cut(s) 252
MvnI CGCG 2 cut(s) 661, 739
MwoI GCNNNNNNNGC 1 cut(s) 983
NciI CCSGG 3 cut(s) 108, 118, 119
NdeII GATC 5 cut(s) 88, 438, 1123, 1137, 1328
NlaIII CATG 2 cut(s) 686, 986
NlaIV GGNNCC 3 cut(s) 344, 1082, 1308
NmeAIII GCCGAG 2 cut(s) 220, 967
NmuCI GTSAC 3 cut(s) 94, 148, 841
NruI TCGCGA 1 cut(s) 661
PciSI GCTCTTC 1 cut(s) 984
PcsI WCGNNNNNNNCGW 1 cut(s) 97
PctI GAATGC 2 cut(s) 278, 858
PdmI GAANNNNTTC 1 cut(s) 978
PfeI GAWTC 6 cut(s) 328, 390, 571, 698, 911, 1130
PkrI GCNGC 1 cut(s) 1022
PleI GAGTC 5 cut(s) 101, 804, 825, 1223, 1243
PpsI GAGTC 5 cut(s) 101, 804, 825, 1223, 1243
Ppu21I YACGTR 1 cut(s) 1004
PpuMI RGGWCCY 2 cut(s) 248, 1306
PshAI GACNNNNGTC 1 cut(s) 1253
PshBI ATTAAT 1 cut(s) 1068
Psp124BI GAGCTC 1 cut(s) 178
Psp5II RGGWCCY 2 cut(s) 248, 1306
Psp6I CCWGG 1 cut(s) 250
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 3 cut(s) 344, 1082, 1308
PspPI GGNCC 4 cut(s) 248, 293, 311, 1306
PspPPI RGGWCCY 2 cut(s) 248, 1306
RruI TCGCGA 1 cut(s) 661
RsaI GTAC 5 cut(s) 578, 671, 755, 1002, 1206
RsaNI GTAC 5 cut(s) 577, 670, 754, 1001, 1205
SacI GAGCTC 1 cut(s) 178
SalI GTCGAC 1 cut(s) 155
SapI GCTCTTC 1 cut(s) 984
SaqAI TTAA 3 cut(s) 429, 1068, 1089
SatI GCNGC 1 cut(s) 1021
Sau3AI GATC 5 cut(s) 88, 438, 1123, 1137, 1328
Sau96I GGNCC 4 cut(s) 248, 293, 311, 1306
ScaI AGTACT 2 cut(s) 671, 755
SchI GAGTC 5 cut(s) 102, 805, 826, 1224, 1243
ScrFI CCNGG 4 cut(s) 108, 118, 119, 252
SduI GDGCHC 2 cut(s) 178, 785
SfcI CTRYAG 2 cut(s) 757, 1114
SinI GGWCC 4 cut(s) 248, 293, 311, 1306
SmaI CCCGGG 1 cut(s) 119
SmlI CTYRAG 1 cut(s) 1251
SmoI CTYRAG 1 cut(s) 1251
Sse9I AATT 7 cut(s) 39, 485, 612, 730, 1040, 1184, 1379
SspMI CTAG 4 cut(s) 69, 368, 557, 774
SstI GAGCTC 1 cut(s) 178
StyD4I CCNGG 4 cut(s) 106, 116, 117, 250
TaaI ACNGT 7 cut(s) 61, 154, 728, 943, 1015, 1118, 1285
TaiI ACGT 1 cut(s) 1006
TaqI TCGA 8 cut(s) 91, 156, 505, 701, 820, 849, 930, 1213
TasI AATT 7 cut(s) 39, 485, 612, 730, 1040, 1184, 1379
TatI WGTACW 3 cut(s) 576, 669, 753
TfiI GAWTC 6 cut(s) 328, 390, 571, 698, 911, 1130
Tru1I TTAA 3 cut(s) 429, 1068, 1089
Tru9I TTAA 3 cut(s) 429, 1068, 1089
TscAI CASTG 6 cut(s) 157, 448, 526, 814, 1123, 1290
TseFI GTSAC 3 cut(s) 94, 148, 841
TseI GCWGC 1 cut(s) 1020
Tsp45I GTSAC 3 cut(s) 94, 148, 841
TspDTI ATGAA 3 cut(s) 249, 505, 971
TspGWI ACGGA 1 cut(s) 306
TspMI CCCGGG 1 cut(s) 117
TspRI CASTG 6 cut(s) 157, 448, 526, 814, 1123, 1290
VpaK11BI GGWCC 4 cut(s) 248, 293, 311, 1306
VspI ATTAAT 1 cut(s) 1068
XagI CCTNNNNNAGG 1 cut(s) 1343
XapI RAATTY 2 cut(s) 485, 1379
XbaI TCTAGA 1 cut(s) 367
XmaI CCCGGG 1 cut(s) 117
XmiI GTMKAC 2 cut(s) 156, 1113
XmnI GAANNNNTTC 1 cut(s) 978
XspI CTAG 4 cut(s) 69, 368, 557, 774
ZrmI AGTACT 2 cut(s) 671, 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.