Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001027

Physical Location & Seq

Genomic Coordinates Reverse (-)

61229185 .. 61232729

Gene Structure 3545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0495100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2304 bp

ATGTTCAAGAATTATCCTATCCACCCTGTGTGTCTTCGCTTTCTGTTATTGATGTTTAGTGTATGCATGGCCATGGCACAGAAGAAAACAACACCAGTAAATGTGGGTGTGATTCTTGAGTCAGATACATGGTTTGGGAAAATGGGGCTCAGCTGCATCAACATGGCTCTCTCTGACTTCTATGCCGTTCATGCTTACTACAATACTAGGATGGTTCTACACACAAGAGACTCCCGGAAAGAAATTGTCGTTGCAGCTGGTGCAGCTCTAGATTTAATAAATAATGTTGAAGTGCAAGCCATCATTGGGCCGGAATCATCTATGAAAGCCAAATTTGTTACTGACCTTGGAGATAAAGCTCAGGTGCCTATAATCTCATTTTCAGCAACAAGCCCTTTCCTTCGGAGTTCATATTTTTTCCGAATTGCACAAAGTGACTCATCTCAAGTGAAAGCCATAAGTTCCATCATCCAAGCGTTTGGTTGGAATGAAGCAGTGCCGATCAGCGTGGATGATGAGTTTGGGGAGGGAATGATACCTTCCTTGACTACCGCTTTGCAAGCGGTTGGTGCTGGTATCCCTTACTGGAGTATCATTCCTCCAATGGCCACTAATGACCAAATTGGTGCTGAGCTTTACAAGTTGATGACAATGCAAACCAGGGTCTTCATATTCCACGTGGCTCCTTCTCTTGGCTCTCGGCTTTTTGCCAAGGCAAAAGAGCTTGGAATGATGAGTGAAGGCTATGTTTGGATAATGACAAATGGAATGACTAACTATTTCGGTTCCTTAAATTCTTCTGTCATAGAGACCATGCAAGGGGTTTTGGGCCTGAAGACTTATGTTCCAGTCACAGAAGAGCTTGAAAATTTTAGAGGTAGATGGCAAAGGAAATTCCAACAAGAAAATCCAAACCTTCTTGATGTTAAATTGGATGTCTTTGGACTGTGGGCTCATGATGCTGCTTGGGCACTGGCCATGGCAATTGAGAAGGTTGGGAGTGCAAACTTCAGCTTTCAAAACATGAACATTTCTGGTAGTTCCACGGATATAGAAAGACTTGGGGTTTCTCAAAGTGGTCCTGAACTTGTTGGAGAACTATCAGGTACAAAATTCAGAGGCCTTTCAGGAGATTTCAGTCTTATCAATGGCCAACTACAATCATCAATTTTTCAGGTAGTTAATGTGAATGATGGTGGGGAAAGAGGGATTGGATATTGGACACCTCAAAATGGACTAGTAAGGAACTTAGGTTCGAAAAACAAAAGCAGATACTCTGCTTCTAATGTCAGTCTTGGTCCTATTATATGGCCCGGAGAAACCACCTCTGCTCCCAAGGGTTGGCAGATTCCTATGAGGGGAAGAAAATTGAGAATTTTAGTTCCAGTGAAGCGCGGATTTAAAGAATTTGTAAATGTGACACATGATCCTACCACGAACAGAACCAATGTCACTGGATACTGCATAGATGTCTTTCATGCTGTAATTGAAGCATTACCATATGATGTTCCGCATGAATTTTTTGCCTTTGCAAAGCCTGAAAGTTACGATGATTTGGTCAATGAAGTGTTTCTTGGGAACTATGATGCTGCAGTGGGAGATATAACCATTAGAGCAAACAGATCCTTGTATGTCGATTTCACGTTGCCATACACAGAATCGGGGATATCAATGGTCGTGCCTATCAAAGACAACAACAATTCTAAAAATACTTGGGTGTTCTTAAAGCCTTTGACCTGGGACGTTTGGGCAGCATTCGGTTGTTTTTTCATATTCATTGGTTTTGTGGTATGGGTTCTTGAACATCGGATTAACAAAGATTTCCGGGGATCTCCAAATCAGCAAATCAGCACAAGCTTTTGGTTCGGCCTCTCAACAATGGTTTTTGCCCACCGGGAGCAAGTAGTGAGCAGCTTGGCTCGGTTTGTAGTAATTGTATGGTGCTTTGTTGTCCTCATAATGACACAGAGTTATGCTGCCAGTTTAGCAACATTTTTAACAGTTCAACAGCTCCAACCAACTGTTACAGATGTAAACCTGCTCATACAGAATGGGGACAGTGTTGGTTACCCAACAGGTTCTTCCCTTTATGGTACATTGAAGCAATTAGGATTCCAGCATGAAAACCTTAAGACCTACAATTCAGCAGAAGAATTGGATGAACTTTTCCAAAATGGAAATCATGGTATTTCTGCTGCTTTTGATGACGCCCCCTACATGAGACTTTTTGTTGCAACTTACTGCTCGAATTATACCATGATTGAGCCAAATTTTAAAGCCGATGGTTTTGCCTTTGTAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009505 GO:0009506 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030054 GO:0030163 GO:0030312 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0051603 GO:0055044 GO:0070008 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

767

Amino Acids

85.27

Weight (kDa)

5.91

Isoelectric Point (pI)

29.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	32 - 335	1.9e-17	Periplasmic binding protein
ANF_receptor	PF01094	52 - 398	1.7e-77	Receptor family ligand binding region
Lig_chan-Glu_bd	PF10613	474 - 561	6.4e-10	Ligated ion channel L-glutamate- and glycine-binding site
SBP_bac_3	PF00497	480 - 566	1e-06	Bacterial extracellular solute-binding proteins, family 3
Lig_chan	PF00060	579 - 684	3.8e-31	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28110 AT1G28110 AT2G33530
fragaria_vesca	FvH4_4g22840 FvH4_4g22840 FvH4_4g22840 FvH4_4g22840 FvH4_4g22840 FvH4_5g09210 FvH4_5g09210 FvH4_5g09210 FvH4_5g09210
malus_domestica	MD06G1132500.v1.1 MD08G1237600.v1.1 MD08G1237700.v1.1 MD08G1237800.v1.1 MD08G1238200.v1.1 MD08G1238400.v1.1 MD13G1129200.v1.1 MD14G1148900.v1.1 MD16G1129200.v1.1
prunus_persica	Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.5G143500_v2.0.a1 Prupe.7G030500_v2.0.a1 Prupe.7G030500_v2.0.a1
pyrus_communis	pycom06g12410 pycom08g20620 pycom08g20640 pycom08g20650 pycom08g20670 pycom13g11220 pycom14g12370 pycom16g10950
rosa_chinensis	RchiOBHm_Chr4g0429071 RchiOBHm_Chr7g0188951
rosa_laevigata	RLG00000004647 RLG00000007099
rosa_multiflora	Rmu_co8506825.1_g000001 Rmu_sc0001753.1_g000029 Rmu_sc0008629.1_g000021 Rmu_ssc0000113.1_g000005
rosa_roxburghii	Rroxscaffold_3G00265910 Rroxscaffold_5G00370710
rosa_rugosa	Rorug04G0232700 Rorug04G0232800 Rorug04G0232900 Rorug04G0232900 Rorug06G0495100
rosa_samantha	Rh4AG288500 Rh4BG294700 Rh4CG310200 Rh4DG291600 Rh7BG101900 Rh7CG103200
rosa_wichuraiana	Rw4G025010 Rw7G008600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2046
AccB1I	GGYRCC	1 cut(s)	364
AccB7I	CCANNNNNTGG	1 cut(s)	1341
AccII	CGCG	1 cut(s)	1395
AciI	CCGC	4 cut(s)	552, 563, 1395, 1511
AclWI	GGATC	3 cut(s)	1421, 1617, 1837
AcoI	YGGCCR	4 cut(s)	69, 606, 975, 1150
AcsI	RAATTY	9 cut(s)	332, 793, 868, 893, 1112, 1374, 1406, 1517, 2269
AcuI	CTGAAG	2 cut(s)	854, 994
AcvI	CACGTG	1 cut(s)	679
AcyI	GRCGYC	1 cut(s)	2208
AdeI	CACNNNGTG	2 cut(s)	28, 434
AfaI	GTAC	2 cut(s)	1108, 2095
AfiI	CCNNNNNNNGG	6 cut(s)	306, 692, 819, 1232, 1341, 1358
AflII	CTTAAG	1 cut(s)	2129
AgsI	TTSAA	8 cut(s)	7, 290, 866, 1019, 1490, 1802, 2006, 2101
AhlI	ACTAGT	1 cut(s)	1237
AjnI	CCWGG	2 cut(s)	659, 1736
AjuI	GAANNNNNNNTTGG	6 cut(s)	1194, 1226, 1557, 1589, 2065, 2097
AloI	GAACNNNNNNTCC	2 cut(s)	1237, 1269
Alw26I	GTCTC	3 cut(s)	222, 803, 2215
AlwI	GGATC	3 cut(s)	1421, 1617, 1837
AoxI	GGCC	9 cut(s)	69, 308, 606, 829, 975, 1120, 1150, 1310, 1867
ApeKI	GCWGC	9 cut(s)	153, 254, 263, 962, 1589, 1751, 1911, 1976, 2195
ApoI	RAATTY	9 cut(s)	332, 793, 868, 893, 1112, 1374, 1406, 1517, 2269
ArsI	GACNNNNNNTTYG	2 cut(s)	538, 570
Asp700I	GAANNNNTTC	1 cut(s)	1569
AspLEI	GCGC	1 cut(s)	1395
AspS9I	GGNCC	5 cut(s)	308, 829, 1079, 1298, 1311
AsuC2I	CCSGG	4 cut(s)	235, 1314, 1826, 1895
AsuII	TTCGAA	1 cut(s)	1256
AvaII	GGWCC	2 cut(s)	1079, 1298
BaeGI	GKGCMC	1 cut(s)	973
BaeI	ACNNNNGTAYC	2 cut(s)	574, 607
BalI	TGGCCA	4 cut(s)	71, 608, 977, 1152
BanI	GGYRCC	1 cut(s)	364
BanII	GRGCYC	2 cut(s)	150, 955
BbrPI	CACGTG	1 cut(s)	679
BbsI	GAAGAC	3 cut(s)	26, 658, 842
BbvI	GCAGC	9 cut(s)	140, 266, 275, 949, 1576, 1763, 1923, 1963, 2182
BccI	CCATC	6 cut(s)	205, 308, 473, 876, 1187, 2276
BceAI	ACGGC	1 cut(s)	170
BcgI	CGANNNNNNTGC	2 cut(s)	2270, 2304
BciT130I	CCWGG	2 cut(s)	661, 1738
BciVI	GTATCC	2 cut(s)	587, 1451
BcnI	CCSGG	4 cut(s)	235, 1314, 1826, 1895
BcoDI	GTCTC	3 cut(s)	222, 803, 2215
BcuI	ACTAGT	1 cut(s)	1237
BfaI	CTAG	3 cut(s)	207, 269, 1238
BfmI	CTRYAG	1 cut(s)	1590
BfrI	CTTAAG	1 cut(s)	2129
BfuAI	ACCTGC	1 cut(s)	2046
BfuI	GTATCC	2 cut(s)	587, 1451
BisI	GCNGC	9 cut(s)	154, 255, 264, 963, 1590, 1752, 1912, 1977, 2196
BlpI	GCTNAGC	2 cut(s)	149, 630
BlsI	GCNGC	9 cut(s)	155, 256, 265, 964, 1591, 1753, 1913, 1978, 2197
Bme1390I	CCNGG	6 cut(s)	235, 661, 1314, 1738, 1826, 1895
Bme18I	GGWCC	2 cut(s)	1079, 1298
BmgT120I	GGNCC	5 cut(s)	308, 829, 1079, 1298, 1311
BmiI	GGNNCC	3 cut(s)	366, 684, 787
BmrFI	CCNGG	6 cut(s)	235, 661, 1314, 1738, 1826, 1895
BmsI	GCATC	3 cut(s)	165, 949, 1576
BpiI	GAAGAC	3 cut(s)	26, 658, 842
BpmI	CTGGAG	1 cut(s)	607
Bpu10I	CCTNAGC	1 cut(s)	360
Bpu1102I	GCTNAGC	2 cut(s)	149, 630
Bpu14I	TTCGAA	1 cut(s)	1256
BpuEI	CTTGAG	2 cut(s)	137, 429
BpuMI	CCSGG	4 cut(s)	235, 1314, 1826, 1895
BsaAI	YACGTR	1 cut(s)	679
BsaHI	GRCGYC	1 cut(s)	2208
BsaI	GGTCTC	1 cut(s)	803
BsaJI	CCNNGG	9 cut(s)	72, 346, 660, 711, 978, 1044, 1335, 1737, 1825
BsaXI	ACNNNNNCTCC	2 cut(s)	1315, 1345
Bsc4I	CCNNNNNNNGG	6 cut(s)	306, 692, 819, 1232, 1341, 1358
Bse1I	ACTGG	7 cut(s)	95, 590, 848, 978, 1385, 1459, 1980
BseBI	CCWGG	2 cut(s)	661, 1738
BseDI	CCNNGG	9 cut(s)	72, 346, 660, 711, 978, 1044, 1335, 1737, 1825
BseGI	GGATG	5 cut(s)	216, 468, 517, 940, 2164
BseLI	CCNNNNNNNGG	6 cut(s)	306, 692, 819, 1232, 1341, 1358
BseMII	CTCAG	3 cut(s)	163, 374, 621
BseNI	ACTGG	7 cut(s)	95, 590, 848, 978, 1385, 1459, 1980
BseSI	GKGCMC	1 cut(s)	973
BseXI	GCAGC	9 cut(s)	140, 266, 275, 949, 1576, 1763, 1923, 1963, 2182
BsgI	GTGCAG	1 cut(s)	282
Bsh1236I	CGCG	1 cut(s)	1395
BshFI	GGCC	9 cut(s)	71, 310, 608, 831, 977, 1122, 1152, 1312, 1869
BshNI	GGYRCC	1 cut(s)	364
BsiSI	CCGG	5 cut(s)	235, 311, 1314, 1825, 1894
BslFI	GGGAC	2 cut(s)	1754, 2069
BslI	CCNNNNNNNGG	6 cut(s)	306, 692, 819, 1232, 1341, 1358
BsmAI	GTCTC	3 cut(s)	222, 803, 2215
BsmFI	GGGAC	2 cut(s)	1754, 2069
BsmI	GAATGC	1 cut(s)	1754
BsnI	GGCC	9 cut(s)	71, 310, 608, 831, 977, 1122, 1152, 1312, 1869
Bso31I	GGTCTC	1 cut(s)	803
Bsp119I	TTCGAA	1 cut(s)	1256
Bsp1286I	GDGCHC	3 cut(s)	150, 955, 973
Bsp143I	GATC	4 cut(s)	501, 1426, 1622, 1829
Bsp1720I	GCTNAGC	2 cut(s)	149, 630
Bsp19I	CCATGG	2 cut(s)	72, 978
BspACI	CCGC	4 cut(s)	552, 563, 1395, 1511
BspANI	GGCC	9 cut(s)	71, 310, 608, 831, 977, 1122, 1152, 1312, 1869
BspCNI	CTCAG	3 cut(s)	162, 373, 622
BspFNI	CGCG	1 cut(s)	1395
BspHI	TCATGA	1 cut(s)	955
BspLI	GGNNCC	3 cut(s)	366, 684, 787
BspMAI	CTGCAG	1 cut(s)	1594
BspMI	ACCTGC	1 cut(s)	2046
BspPI	GGATC	3 cut(s)	1421, 1617, 1837
BspQI	GCTCTTC	1 cut(s)	852
BspT104I	TTCGAA	1 cut(s)	1256
BspT107I	GGYRCC	1 cut(s)	364
BspTI	CTTAAG	1 cut(s)	2129
BspTNI	GGTCTC	1 cut(s)	803
BsrI	ACTGG	7 cut(s)	95, 590, 848, 978, 1385, 1459, 1980
BssECI	CCNNGG	9 cut(s)	72, 346, 660, 711, 978, 1044, 1335, 1737, 1825
BssMI	GATC	4 cut(s)	501, 1426, 1622, 1829
BssNI	GRCGYC	1 cut(s)	2208
BssT1I	CCWWGG	5 cut(s)	72, 346, 711, 978, 1335
Bst2UI	CCWGG	2 cut(s)	661, 1738
Bst4CI	ACNGT	4 cut(s)	948, 2002, 2023, 2060
Bst6I	CTCTTC	1 cut(s)	852
BstACI	GRCGYC	1 cut(s)	2208
BstAFI	CTTAAG	1 cut(s)	2129
BstAPI	GCANNNNNTGC	1 cut(s)	260
BstBAI	YACGTR	1 cut(s)	679
BstBI	TTCGAA	1 cut(s)	1256
BstC8I	GCNNGC	2 cut(s)	297, 561
BstDEI	CTNAG	4 cut(s)	149, 360, 630, 1249
BstDSI	CCRYGG	3 cut(s)	72, 978, 1044
BstEII	GGTNACC	1 cut(s)	2066
BstF5I	GGATG	5 cut(s)	216, 468, 517, 940, 2164
BstFNI	CGCG	1 cut(s)	1395
BstHHI	GCGC	1 cut(s)	1395
BstKTI	GATC	4 cut(s)	504, 1429, 1625, 1832
BstMAI	GTCTC	3 cut(s)	222, 803, 2215
BstMBI	GATC	4 cut(s)	501, 1426, 1622, 1829
BstMWI	GCNNNNNNNGC	8 cut(s)	191, 260, 263, 560, 569, 959, 968, 1985
BstNI	CCWGG	2 cut(s)	661, 1738
BstPI	GGTNACC	1 cut(s)	2066
BstSCI	CCNGG	6 cut(s)	233, 659, 1312, 1736, 1824, 1893
BstSFI	CTRYAG	1 cut(s)	1590
BstSLI	GKGCMC	1 cut(s)	973
BstUI	CGCG	1 cut(s)	1395
BstV1I	GCAGC	9 cut(s)	140, 266, 275, 949, 1576, 1763, 1923, 1963, 2182
BstV2I	GAAGAC	3 cut(s)	26, 658, 842
BstX2I	RGATCY	2 cut(s)	1622, 1829
BstXI	CCANNNNNNTGG	1 cut(s)	479
BstYI	RGATCY	2 cut(s)	1622, 1829
BsuI	GTATCC	2 cut(s)	587, 1451
BsuRI	GGCC	9 cut(s)	71, 310, 608, 831, 977, 1122, 1152, 1312, 1869
BtgI	CCRYGG	3 cut(s)	72, 978, 1044
BtsCI	GGATG	5 cut(s)	216, 468, 517, 940, 2164
BtsI	GCAGTG	2 cut(s)	501, 1599
BtsIMutI	CAGTG	6 cut(s)	501, 971, 1392, 1452, 1599, 2065
BveI	ACCTGC	1 cut(s)	2046
Cac8I	GCNNGC	2 cut(s)	297, 561
CciI	TCATGA	1 cut(s)	955
CfoI	GCGC	1 cut(s)	1395
Cfr13I	GGNCC	5 cut(s)	308, 829, 1079, 1298, 1311
CseI	GACGC	1 cut(s)	2216
Csp6I	GTAC	2 cut(s)	1107, 2094
CviQI	GTAC	2 cut(s)	1107, 2094
DdeI	CTNAG	4 cut(s)	149, 360, 630, 1249
DpnI	GATC	4 cut(s)	503, 1428, 1624, 1831
DpnII	GATC	4 cut(s)	501, 1426, 1622, 1829
DraI	TTTAAA	2 cut(s)	1402, 2275
DraIII	CACNNNGTG	2 cut(s)	28, 434
EaeI	YGGCCR	4 cut(s)	69, 606, 975, 1150
Eam1104I	CTCTTC	1 cut(s)	852
EarI	CTCTTC	1 cut(s)	852
Eco130I	CCWWGG	5 cut(s)	72, 346, 711, 978, 1335
Eco147I	AGGCCT	1 cut(s)	1122
Eco24I	GRGCYC	2 cut(s)	150, 955
Eco31I	GGTCTC	1 cut(s)	803
Eco32I	GATATC	1 cut(s)	1668
Eco47I	GGWCC	2 cut(s)	1079, 1298
Eco57I	CTGAAG	2 cut(s)	854, 994
Eco72I	CACGTG	1 cut(s)	679
Eco91I	GGTNACC	1 cut(s)	2066
EcoO65I	GGTNACC	1 cut(s)	2066
EcoRII	CCWGG	2 cut(s)	659, 1736
EcoRV	GATATC	1 cut(s)	1668
EcoT14I	CCWWGG	5 cut(s)	72, 346, 711, 978, 1335
EcoT22I	ATGCAT	1 cut(s)	68
EcoT38I	GRGCYC	2 cut(s)	150, 955
ErhI	CCWWGG	5 cut(s)	72, 346, 711, 978, 1335
FalI	AAGNNNNNCTT	2 cut(s)	1557, 1589
FaqI	GGGAC	2 cut(s)	1754, 2069
FauNDI	CATATG	1 cut(s)	1501
Fnu4HI	GCNGC	9 cut(s)	154, 255, 264, 963, 1590, 1752, 1912, 1977, 2196
FokI	GGATG	5 cut(s)	223, 455, 524, 947, 2171
FriOI	GRGCYC	2 cut(s)	150, 955
Fsp4HI	GCNGC	9 cut(s)	154, 255, 264, 963, 1590, 1752, 1912, 1977, 2196
FspBI	CTAG	3 cut(s)	207, 269, 1238
GlaI	GCGC	1 cut(s)	1394
GluI	GCNGC	9 cut(s)	154, 255, 264, 963, 1590, 1752, 1912, 1977, 2196
GsuI	CTGGAG	1 cut(s)	607
HaeIII	GGCC	9 cut(s)	71, 310, 608, 831, 977, 1122, 1152, 1312, 1869
HapII	CCGG	5 cut(s)	235, 311, 1314, 1825, 1894
HgaI	GACGC	1 cut(s)	2216
HhaI	GCGC	1 cut(s)	1395
Hin1I	GRCGYC	1 cut(s)	2208
Hin6I	GCGC	1 cut(s)	1393
HinP1I	GCGC	1 cut(s)	1393
HindIII	AAGCTT	1 cut(s)	1855
HinfI	GANTC	8 cut(s)	112, 119, 230, 314, 437, 1348, 1658, 2112
HpaII	CCGG	5 cut(s)	235, 311, 1314, 1825, 1894
Hpy166II	GTNNAC	1 cut(s)	2035
Hpy188I	TCNGA	6 cut(s)	124, 175, 405, 422, 1118, 1809
Hpy188III	TCNNGA	8 cut(s)	7, 116, 269, 920, 956, 1082, 1128, 1799
Hpy8I	GTNNAC	1 cut(s)	2035
HpyAV	CCTTC	6 cut(s)	410, 549, 696, 734, 926, 985
HpyCH4III	ACNGT	4 cut(s)	948, 2002, 2023, 2060
HpyCH4IV	ACGT	3 cut(s)	678, 1643, 1743
HpyF10VI	GCNNNNNNNGC	8 cut(s)	191, 260, 263, 560, 569, 959, 968, 1985
HpyF3I	CTNAG	4 cut(s)	149, 360, 630, 1249
HpySE526I	ACGT	3 cut(s)	678, 1643, 1743
Hsp92I	GRCGYC	1 cut(s)	2208
HspAI	GCGC	1 cut(s)	1393
Kzo9I	GATC	4 cut(s)	501, 1426, 1622, 1829
LguI	GCTCTTC	1 cut(s)	852
LmnI	GCTCC	4 cut(s)	688, 1336, 1897, 2016
Lsp1109I	GCAGC	9 cut(s)	140, 266, 275, 949, 1576, 1763, 1923, 1963, 2182
LweI	GCATC	3 cut(s)	165, 949, 1576
MaeI	CTAG	3 cut(s)	207, 269, 1238
MaeII	ACGT	3 cut(s)	678, 1643, 1743
MaeIII	GTNAC	8 cut(s)	337, 434, 850, 1417, 1450, 1544, 2023, 2066
MalI	GATC	4 cut(s)	503, 1428, 1624, 1831
MboI	GATC	4 cut(s)	501, 1426, 1622, 1829
MboII	GAAGA	9 cut(s)	26, 94, 658, 789, 847, 869, 1374, 2073, 2162
MfeI	CAATTG	1 cut(s)	984
MflI	RGATCY	2 cut(s)	1622, 1829
MhlI	GDGCHC	3 cut(s)	150, 955, 973
MlsI	TGGCCA	4 cut(s)	71, 608, 977, 1152
MluNI	TGGCCA	4 cut(s)	71, 608, 977, 1152
MlyI	GAGTC	3 cut(s)	128, 224, 431
MmeI	TCCRAC	4 cut(s)	464, 922, 1072, 2038
Mox20I	TGGCCA	4 cut(s)	71, 608, 977, 1152
Mph1103I	ATGCAT	1 cut(s)	68
MroXI	GAANNNNTTC	1 cut(s)	1569
MscI	TGGCCA	4 cut(s)	71, 608, 977, 1152
MslI	CAYNNNNRTG	2 cut(s)	71, 161
Msp20I	TGGCCA	4 cut(s)	71, 608, 977, 1152
MspA1I	CMGCKG	2 cut(s)	153, 257
MspCI	CTTAAG	1 cut(s)	2129
MspI	CCGG	5 cut(s)	235, 311, 1314, 1825, 1894
MspR9I	CCNGG	6 cut(s)	235, 661, 1314, 1738, 1826, 1895
MunI	CAATTG	1 cut(s)	984
Mva1269I	GAATGC	1 cut(s)	1754
MvaI	CCWGG	2 cut(s)	661, 1738
MvnI	CGCG	1 cut(s)	1395
MwoI	GCNNNNNNNGC	8 cut(s)	191, 260, 263, 560, 569, 959, 968, 1985
NciI	CCSGG	4 cut(s)	235, 1314, 1826, 1895
NcoI	CCATGG	2 cut(s)	72, 978
NdeI	CATATG	1 cut(s)	1501
NdeII	GATC	4 cut(s)	501, 1426, 1622, 1829
NlaIV	GGNNCC	3 cut(s)	366, 684, 787
NmeAIII	GCCGAG	1 cut(s)	679
NmuCI	GTSAC	4 cut(s)	434, 850, 1417, 1450
NsiI	ATGCAT	1 cut(s)	68
NspV	TTCGAA	1 cut(s)	1256
PagI	TCATGA	1 cut(s)	955
PceI	AGGCCT	1 cut(s)	1122
PciSI	GCTCTTC	1 cut(s)	852
PctI	GAATGC	1 cut(s)	1754
PdmI	GAANNNNTTC	1 cut(s)	1569
PfeI	GAWTC	5 cut(s)	112, 314, 1348, 1658, 2112
PflMI	CCANNNNNTGG	1 cut(s)	1341
PfoI	TCCNGGA	1 cut(s)	233
PkrI	GCNGC	9 cut(s)	155, 256, 265, 964, 1591, 1753, 1913, 1978, 2197
PleI	GAGTC	3 cut(s)	127, 224, 431
PmaCI	CACGTG	1 cut(s)	679
PmlI	CACGTG	1 cut(s)	679
PpsI	GAGTC	3 cut(s)	127, 224, 431
Ppu21I	YACGTR	1 cut(s)	679
Psp6I	CCWGG	2 cut(s)	659, 1736
PspCI	CACGTG	1 cut(s)	679
PspEI	GGTNACC	1 cut(s)	2066
PspGI	CCWGG	2 cut(s)	659, 1736
PspN4I	GGNNCC	3 cut(s)	366, 684, 787
PspPI	GGNCC	5 cut(s)	308, 829, 1079, 1298, 1311
PstI	CTGCAG	1 cut(s)	1594
PsuI	RGATCY	2 cut(s)	1622, 1829
PvuII	CAGCTG	2 cut(s)	153, 257
RsaI	GTAC	2 cut(s)	1108, 2095
RsaNI	GTAC	2 cut(s)	1107, 2094
RseI	CAYNNNNRTG	2 cut(s)	71, 161
SapI	GCTCTTC	1 cut(s)	852
SatI	GCNGC	9 cut(s)	154, 255, 264, 963, 1590, 1752, 1912, 1977, 2196
Sau3AI	GATC	4 cut(s)	501, 1426, 1622, 1829
Sau96I	GGNCC	5 cut(s)	308, 829, 1079, 1298, 1311
SchI	GAGTC	3 cut(s)	128, 224, 431
ScrFI	CCNGG	6 cut(s)	235, 661, 1314, 1738, 1826, 1895
SduI	GDGCHC	3 cut(s)	150, 955, 973
SfaNI	GCATC	3 cut(s)	165, 949, 1576
SfcI	CTRYAG	1 cut(s)	1590
SfuI	TTCGAA	1 cut(s)	1256
SinI	GGWCC	2 cut(s)	1079, 1298
SmiMI	CAYNNNNRTG	2 cut(s)	71, 161
SmlI	CTYRAG	3 cut(s)	116, 444, 2129
SmoI	CTYRAG	3 cut(s)	116, 444, 2129
SpeI	ACTAGT	1 cut(s)	1237
SseBI	AGGCCT	1 cut(s)	1122
SsiI	CCGC	4 cut(s)	552, 563, 1395, 1511
SspMI	CTAG	3 cut(s)	207, 269, 1238
StuI	AGGCCT	1 cut(s)	1122
StyD4I	CCNGG	6 cut(s)	233, 659, 1312, 1736, 1824, 1893
StyI	CCWWGG	5 cut(s)	72, 346, 711, 978, 1335
TaaI	ACNGT	4 cut(s)	948, 2002, 2023, 2060
TaiI	ACGT	3 cut(s)	681, 1646, 1746
TaqI	TCGA	3 cut(s)	1256, 1635, 2246
TfiI	GAWTC	5 cut(s)	112, 314, 1348, 1658, 2112
TscAI	CASTG	6 cut(s)	501, 978, 1392, 1459, 1599, 2065
TseFI	GTSAC	4 cut(s)	434, 850, 1417, 1450
TseI	GCWGC	9 cut(s)	153, 254, 263, 962, 1589, 1751, 1911, 1976, 2195
Tsp45I	GTSAC	4 cut(s)	434, 850, 1417, 1450
TspGWI	ACGGA	1 cut(s)	1061
TspRI	CASTG	6 cut(s)	501, 978, 1392, 1459, 1599, 2065
Van91I	CCANNNNNTGG	1 cut(s)	1341
Vha464I	CTTAAG	1 cut(s)	2129
VpaK11BI	GGWCC	2 cut(s)	1079, 1298
XapI	RAATTY	9 cut(s)	332, 793, 868, 893, 1112, 1374, 1406, 1517, 2269
XbaI	TCTAGA	1 cut(s)	268
XmnI	GAANNNNTTC	1 cut(s)	1569
XspI	CTAG	3 cut(s)	207, 269, 1238
Zsp2I	ATGCAT	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.