Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000113.1

Orthogroup ID

OG0001027

Physical Location & Seq

Genomic Coordinates Forward (+)

17681 .. 19425

Gene Structure 1745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000113.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

atgaagacaatggcaatggctctactacttgtgcttcagctgtgcttcatttccatggagtttgttgagtcctcatctcatcactatgatcacaagatagttaggcttccaggacaacccagtgtggactttcaacacttttcaggttatatttctgtgagcgatcatcagaaaaaccacaaagctctattttactactttgctgaagcagaaaaaaacccagcttcaaagcctttggtcctctggttaaatggaggtcctggttgttcttctgttggagtaggggctttctctgaaaatggaccttttagaccagatggtcaagtcctggttagaaatgagtacagctggaatatagaggctaatatgttgtatttagagacaccagttggtgtgggattctcttattctagacatagctccaacgatgtggcagtggatgatgaagcaacagccagggacaatcttgtattcttacaacgctggttcaacaagttccctcaatataagcacagagatttgtttctaactggagaaagttatgcaggtcactacatccctcaacttgcaaagcttatggttgaagctaacagcaaagagaagttgttcaatctaaaaggactagctttaggtaaccctgtcctagaattcgccaccgacttaaattcaagagctgagtatttctggtctcatggactaatatcagactcaacatacagaatgttcacttctgtttgcaactattcgcgctacgtgagtgagtactatagagactcggtttcacctgtttgttcaagagttatgaaccaagtgagcatagaaaccagtaaatttgtggataagtatgatgtcactcttgacgtctgcatttcatctgtgctctcacagtcaaaggctataagccccaaccaaatgacacagaggattgatgtgtgtgtagaagacaagattgtaagttacttgaaccgaaaagatgtgcagaaggctctccatgccaagcttgtaggggttcgaagatgggatgtttgcagcgagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009505 GO:0009506 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030054 GO:0030163 GO:0030312 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0051603 GO:0055044 GO:0070008 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

345

Amino Acids

39.21

Weight (kDa)

6.6

Isoelectric Point (pI)

41.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28110 AT1G28110 AT2G33530
fragaria_vesca	FvH4_4g22840 FvH4_4g22840 FvH4_4g22840 FvH4_4g22840 FvH4_4g22840 FvH4_5g09210 FvH4_5g09210 FvH4_5g09210 FvH4_5g09210
malus_domestica	MD06G1132500.v1.1 MD08G1237600.v1.1 MD08G1237700.v1.1 MD08G1237800.v1.1 MD08G1238200.v1.1 MD08G1238400.v1.1 MD13G1129200.v1.1 MD14G1148900.v1.1 MD16G1129200.v1.1
prunus_persica	Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.5G143500_v2.0.a1 Prupe.7G030500_v2.0.a1 Prupe.7G030500_v2.0.a1
pyrus_communis	pycom06g12410 pycom08g20620 pycom08g20640 pycom08g20650 pycom08g20670 pycom13g11220 pycom14g12370 pycom16g10950
rosa_chinensis	RchiOBHm_Chr4g0429071 RchiOBHm_Chr7g0188951
rosa_laevigata	RLG00000004647 RLG00000007099
rosa_multiflora	Rmu_co8506825.1_g000001 Rmu_sc0001753.1_g000029 Rmu_sc0008629.1_g000021 Rmu_ssc0000113.1_g000005
rosa_roxburghii	Rroxscaffold_3G00265910 Rroxscaffold_5G00370710
rosa_rugosa	Rorug04G0232700 Rorug04G0232800 Rorug04G0232900 Rorug04G0232900 Rorug06G0495100
rosa_samantha	Rh4AG288500 Rh4BG294700 Rh4CG310200 Rh4DG291600 Rh7BG101900 Rh7CG103200
rosa_wichuraiana	Rw4G025010 Rw7G008600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	318
AatII	GACGTC	1 cut(s)	864
Acc36I	ACCTGC	1 cut(s)	536
AccII	CGCG	1 cut(s)	748
AcsI	RAATTY	3 cut(s)	647, 664, 830
AcuI	CTGAAG	2 cut(s)	20, 225
AcyI	GRCGYC	1 cut(s)	861
AfaI	GTAC	2 cut(s)	344, 764
AgsI	TTSAA	8 cut(s)	134, 228, 490, 584, 610, 669, 795, 964
AjnI	CCWGG	4 cut(s)	109, 259, 327, 455
Alw21I	GWGCWC	1 cut(s)	882
Alw26I	GTCTC	3 cut(s)	374, 693, 765
ApeKI	GCWGC	1 cut(s)	1029
ApoI	RAATTY	3 cut(s)	647, 664, 830
Asp700I	GAANNNNTTC	1 cut(s)	605
AspLEI	GCGC	1 cut(s)	750
AspS9I	GGNCC	3 cut(s)	238, 257, 302
AsuHPI	GGTGA	1 cut(s)	774
AsuII	TTCGAA	1 cut(s)	1012
AvaII	GGWCC	3 cut(s)	238, 257, 302
BbsI	GAAGAC	2 cut(s)	11, 948
Bbv12I	GWGCWC	1 cut(s)	882
BccI	CCATC	2 cut(s)	311, 1011
BciT130I	CCWGG	4 cut(s)	111, 261, 329, 457
BclI	TGATCA	1 cut(s)	88
BcoDI	GTCTC	3 cut(s)	374, 693, 765
BfaI	CTAG	3 cut(s)	411, 623, 644
BfmI	CTRYAG	1 cut(s)	766
BfuAI	ACCTGC	1 cut(s)	536
BisI	GCNGC	1 cut(s)	1030
BlsI	GCNGC	1 cut(s)	1031
BmcAI	AGTACT	1 cut(s)	764
Bme1390I	CCNGG	4 cut(s)	111, 261, 329, 457
Bme18I	GGWCC	3 cut(s)	238, 257, 302
BmgT120I	GGNCC	3 cut(s)	238, 257, 302
BmrFI	CCNGG	4 cut(s)	111, 261, 329, 457
BmrI	ACTGGG	1 cut(s)	114
BmuI	ACTGGG	1 cut(s)	114
BpiI	GAAGAC	2 cut(s)	11, 948
BpmI	CTGGAG	1 cut(s)	552
Bpu14I	TTCGAA	1 cut(s)	1012
BsaAI	YACGTR	1 cut(s)	754
BsaHI	GRCGYC	1 cut(s)	861
BsaI	GGTCTC	1 cut(s)	693
BsaJI	CCNNGG	2 cut(s)	54, 456
Bse1I	ACTGG	4 cut(s)	120, 386, 535, 825
Bse3DI	GCAATG	1 cut(s)	21
BseBI	CCWGG	4 cut(s)	111, 261, 329, 457
BseDI	CCNNGG	2 cut(s)	54, 456
BseGI	GGATG	3 cut(s)	445, 555, 1027
BseMI	GCAATG	1 cut(s)	21
BseMII	CTCAG	1 cut(s)	666
BseNI	ACTGG	4 cut(s)	120, 386, 535, 825
BseYI	CCCAGC	1 cut(s)	220
BsgI	GTGCAG	1 cut(s)	998
Bsh1236I	CGCG	1 cut(s)	748
BsiHKAI	GWGCWC	1 cut(s)	882
BslFI	GGGAC	1 cut(s)	473
BsmAI	GTCTC	3 cut(s)	374, 693, 765
BsmFI	GGGAC	1 cut(s)	473
Bso31I	GGTCTC	1 cut(s)	693
Bsp119I	TTCGAA	1 cut(s)	1012
Bsp1286I	GDGCHC	1 cut(s)	882
Bsp143I	GATC	2 cut(s)	88, 163
Bsp19I	CCATGG	1 cut(s)	54
BspCNI	CTCAG	1 cut(s)	667
BspFNI	CGCG	1 cut(s)	748
BspMI	ACCTGC	1 cut(s)	536
BspT104I	TTCGAA	1 cut(s)	1012
BspTNI	GGTCTC	1 cut(s)	693
BsrDI	GCAATG	1 cut(s)	21
BsrI	ACTGG	4 cut(s)	120, 386, 535, 825
BssECI	CCNNGG	2 cut(s)	54, 456
BssMI	GATC	2 cut(s)	88, 163
BssNI	GRCGYC	1 cut(s)	861
BssT1I	CCWWGG	1 cut(s)	54
Bst2UI	CCWGG	4 cut(s)	111, 261, 329, 457
Bst4CI	ACNGT	1 cut(s)	888
BstACI	GRCGYC	1 cut(s)	861
BstBAI	YACGTR	1 cut(s)	754
BstBI	TTCGAA	1 cut(s)	1012
BstDEI	CTNAG	1 cut(s)	675
BstDSI	CCRYGG	1 cut(s)	54
BstEII	GGTNACC	1 cut(s)	632
BstF5I	GGATG	3 cut(s)	445, 555, 1027
BstFNI	CGCG	1 cut(s)	748
BstHHI	GCGC	1 cut(s)	750
BstKTI	GATC	2 cut(s)	91, 166
BstMAI	GTCTC	3 cut(s)	374, 693, 765
BstMBI	GATC	2 cut(s)	88, 163
BstMWI	GCNNNNNNNGC	1 cut(s)	992
BstNI	CCWGG	4 cut(s)	111, 261, 329, 457
BstPI	GGTNACC	1 cut(s)	632
BstSCI	CCNGG	4 cut(s)	109, 259, 327, 455
BstSFI	CTRYAG	1 cut(s)	766
BstUI	CGCG	1 cut(s)	748
BstV2I	GAAGAC	2 cut(s)	11, 948
BstXI	CCANNNNNNTGG	1 cut(s)	430
BtgI	CCRYGG	1 cut(s)	54
BtsCI	GGATG	3 cut(s)	445, 555, 1027
BtsI	GCAGTG	1 cut(s)	441
BtsIMutI	CAGTG	2 cut(s)	127, 441
BveI	ACCTGC	1 cut(s)	536
CfoI	GCGC	1 cut(s)	750
Cfr13I	GGNCC	3 cut(s)	238, 257, 302
Csp6I	GTAC	2 cut(s)	343, 763
CviAII	CATG	3 cut(s)	55, 692, 992
CviQI	GTAC	2 cut(s)	343, 763
DdeI	CTNAG	1 cut(s)	675
DpnI	GATC	2 cut(s)	90, 165
DpnII	GATC	2 cut(s)	88, 163
DrdI	GACNNNNNNGTC	1 cut(s)	318
DseDI	GACNNNNNNGTC	1 cut(s)	318
Eco130I	CCWWGG	1 cut(s)	54
Eco31I	GGTCTC	1 cut(s)	693
Eco47I	GGWCC	3 cut(s)	238, 257, 302
Eco57I	CTGAAG	2 cut(s)	20, 225
Eco91I	GGTNACC	1 cut(s)	632
EcoO109I	RGGNCCY	1 cut(s)	257
EcoO65I	GGTNACC	1 cut(s)	632
EcoRI	GAATTC	1 cut(s)	647
EcoRII	CCWGG	4 cut(s)	109, 259, 327, 455
EcoT14I	CCWWGG	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	3 cut(s)	58, 695, 995
FaqI	GGGAC	1 cut(s)	473
FatI	CATG	3 cut(s)	54, 691, 991
FbaI	TGATCA	1 cut(s)	88
Fnu4HI	GCNGC	1 cut(s)	1030
FokI	GGATG	3 cut(s)	452, 542, 1034
Fsp4HI	GCNGC	1 cut(s)	1030
FspBI	CTAG	3 cut(s)	411, 623, 644
GlaI	GCGC	1 cut(s)	749
GluI	GCNGC	1 cut(s)	1030
GsaI	CCCAGC	1 cut(s)	224
GsuI	CTGGAG	1 cut(s)	552
HhaI	GCGC	1 cut(s)	750
Hin1I	GRCGYC	1 cut(s)	861
Hin1II	CATG	3 cut(s)	58, 695, 995
Hin6I	GCGC	1 cut(s)	748
HinP1I	GCGC	1 cut(s)	748
HindIII	AAGCTT	2 cut(s)	572, 998
HinfI	GANTC	4 cut(s)	68, 399, 707, 773
HphI	GGTGA	1 cut(s)	774
Hpy166II	GTNNAC	2 cut(s)	127, 726
Hpy188I	TCNGA	3 cut(s)	171, 295, 706
Hpy188III	TCNNGA	4 cut(s)	411, 669, 795, 857
Hpy8I	GTNNAC	2 cut(s)	127, 726
HpyAV	CCTTC	1 cut(s)	976
HpyCH4III	ACNGT	1 cut(s)	888
HpyCH4IV	ACGT	2 cut(s)	753, 861
HpyCH4V	TGCA	6 cut(s)	545, 569, 738, 867, 979, 1029
HpyF10VI	GCNNNNNNNGC	1 cut(s)	992
HpyF3I	CTNAG	1 cut(s)	675
HpySE526I	ACGT	2 cut(s)	753, 861
Hsp92I	GRCGYC	1 cut(s)	861
Hsp92II	CATG	3 cut(s)	58, 695, 995
HspAI	GCGC	1 cut(s)	748
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	2 cut(s)	88, 163
LmnI	GCTCC	1 cut(s)	425
MaeI	CTAG	3 cut(s)	411, 623, 644
MaeII	ACGT	2 cut(s)	753, 861
MaeIII	GTNAC	4 cut(s)	548, 632, 850, 956
MalI	GATC	2 cut(s)	90, 165
MboI	GATC	2 cut(s)	88, 163
MboII	GAAGA	4 cut(s)	16, 261, 953, 1026
MhlI	GDGCHC	1 cut(s)	882
MluCI	AATT	3 cut(s)	647, 664, 830
MlyI	GAGTC	3 cut(s)	77, 701, 767
MmeI	TCCRAC	2 cut(s)	256, 447
MnlI	CCTC	7 cut(s)	82, 248, 251, 352, 510, 570, 915
MroXI	GAANNNNTTC	1 cut(s)	605
MseI	TTAA	2 cut(s)	248, 662
MslI	CAYNNNNRTG	2 cut(s)	53, 84
MspA1I	CMGCKG	2 cut(s)	40, 348
MspR9I	CCNGG	4 cut(s)	111, 261, 329, 457
MvaI	CCWGG	4 cut(s)	111, 261, 329, 457
MvnI	CGCG	1 cut(s)	748
MwoI	GCNNNNNNNGC	1 cut(s)	992
NcoI	CCATGG	1 cut(s)	54
NdeII	GATC	2 cut(s)	88, 163
NlaIII	CATG	3 cut(s)	58, 695, 995
NmuCI	GTSAC	2 cut(s)	548, 850
NspV	TTCGAA	1 cut(s)	1012
PdmI	GAANNNNTTC	1 cut(s)	605
PfeI	GAWTC	1 cut(s)	399
PfoI	TCCNGGA	1 cut(s)	109
PkrI	GCNGC	1 cut(s)	1031
PleI	GAGTC	3 cut(s)	76, 701, 767
PpsI	GAGTC	3 cut(s)	76, 701, 767
Ppu21I	YACGTR	1 cut(s)	754
PpuMI	RGGWCCY	1 cut(s)	257
Psp5II	RGGWCCY	1 cut(s)	257
Psp6I	CCWGG	4 cut(s)	109, 259, 327, 455
PspEI	GGTNACC	1 cut(s)	632
PspFI	CCCAGC	1 cut(s)	220
PspGI	CCWGG	4 cut(s)	109, 259, 327, 455
PspPI	GGNCC	3 cut(s)	238, 257, 302
PspPPI	RGGWCCY	1 cut(s)	257
PvuII	CAGCTG	2 cut(s)	40, 348
RsaI	GTAC	2 cut(s)	344, 764
RsaNI	GTAC	2 cut(s)	343, 763
RseI	CAYNNNNRTG	2 cut(s)	53, 84
SaqAI	TTAA	2 cut(s)	248, 662
SatI	GCNGC	1 cut(s)	1030
Sau3AI	GATC	2 cut(s)	88, 163
Sau96I	GGNCC	3 cut(s)	238, 257, 302
ScaI	AGTACT	1 cut(s)	764
SchI	GAGTC	3 cut(s)	77, 701, 767
ScrFI	CCNGG	4 cut(s)	111, 261, 329, 457
SduI	GDGCHC	1 cut(s)	882
SfcI	CTRYAG	1 cut(s)	766
SfuI	TTCGAA	1 cut(s)	1012
SinI	GGWCC	3 cut(s)	238, 257, 302
SmiMI	CAYNNNNRTG	2 cut(s)	53, 84
Sse9I	AATT	3 cut(s)	647, 664, 830
SspMI	CTAG	3 cut(s)	411, 623, 644
StyD4I	CCNGG	4 cut(s)	109, 259, 327, 455
StyI	CCWWGG	1 cut(s)	54
TaaI	ACNGT	1 cut(s)	888
TaiI	ACGT	2 cut(s)	756, 864
TaqI	TCGA	1 cut(s)	1012
TasI	AATT	3 cut(s)	647, 664, 830
TatI	WGTACW	2 cut(s)	342, 762
TfiI	GAWTC	1 cut(s)	399
Tru1I	TTAA	2 cut(s)	248, 662
Tru9I	TTAA	2 cut(s)	248, 662
TscAI	CASTG	2 cut(s)	127, 441
TseFI	GTSAC	2 cut(s)	548, 850
TseI	GCWGC	1 cut(s)	1029
Tsp45I	GTSAC	2 cut(s)	548, 850
TspDTI	ATGAA	5 cut(s)	17, 37, 459, 818, 861
TspRI	CASTG	2 cut(s)	127, 441
VpaK11BI	GGWCC	3 cut(s)	238, 257, 302
XapI	RAATTY	3 cut(s)	647, 664, 830
XbaI	TCTAGA	1 cut(s)	410
XcmI	CCANNNNNNNNNTGG	1 cut(s)	832
XmnI	GAANNNNTTC	1 cut(s)	605
XspI	CTAG	3 cut(s)	411, 623, 644
ZraI	GACGTC	1 cut(s)	862
ZrmI	AGTACT	1 cut(s)	764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.