Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0001027

Physical Location & Seq

Genomic Coordinates Forward (+)

30491889 .. 30494013

Gene Structure 2125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1237700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGTCACGCTTGAGCTTTTTTTGCTTGCAGATTGGCAATCCTCTTTTAGAATTCAATTCTGATAAAAACGCACAAGCAGAGTACTGGTGGTCTCATGGATTAATATTGGATGCGACCTTCGAAAATTTGACTTCAGTCTGTAACTTTTCTGAAATTGTTAGACAGATAGACATTCGTGGTGGTCCACTTAGCCCTGCTTGTGATGCAGTAGCGAACCAATTTGAAAGTGAAGTCCCTGACCATTTGATCAACCAATATGACGTTACTCGCAATGTCTGTTTATCATCGGTCGAGGCTCAATCTTTCCAACTGCGAAAAACAGAGAAGATAGATGTCTGTATCGGAGATGAAACAGTTACATACTTAAACCGACCAGATGTACAGGAGGTGCTTCATGCCCGAGTCACAAATTGGACAACTTGCAGCAAAGTTGTCATCCAGTATGACATGAAAAACCTGGAAACACCGATGCTTCCAGTTTTAGGTGACCTTGTCAAGTCTGGAATTCGGGTTTTAATTTACAGTGGAGATCAAGATTCTGCTATTCCACTAACGAGTACACGGACACTGGTGAACGGATTGGCAAAGGACTTGGGGCTACAAACGAACGTGCCTTACAGTGTCTGGGTTCAAGAAAAACAGGTTGCTGGATGGACACAAGTATACAGTGACGCTTTATCTTACGCTACCATAAGAGGAGCAGGCCATGAAGCTCCAATTTCGCAGCCAGAGAGATCACTACTTATGTTTGCCTCATTTCTGAGAGGAAAGCCACTGCCAAAAGCCATCACTAAGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

267

Amino Acids

29.71

Weight (kDa)

5.28

Isoelectric Point (pI)

33.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	8 - 256	2.4e-46	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28110 AT1G28110 AT2G33530
fragaria_vesca	FvH4_4g22840 FvH4_4g22840 FvH4_4g22840 FvH4_4g22840 FvH4_4g22840 FvH4_5g09210 FvH4_5g09210 FvH4_5g09210 FvH4_5g09210
malus_domestica	MD06G1132500.v1.1 MD08G1237600.v1.1 MD08G1237700.v1.1 MD08G1237800.v1.1 MD08G1238200.v1.1 MD08G1238400.v1.1 MD13G1129200.v1.1 MD14G1148900.v1.1 MD16G1129200.v1.1
prunus_persica	Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.5G143500_v2.0.a1 Prupe.7G030500_v2.0.a1 Prupe.7G030500_v2.0.a1
pyrus_communis	pycom06g12410 pycom08g20620 pycom08g20640 pycom08g20650 pycom08g20670 pycom13g11220 pycom14g12370 pycom16g10950
rosa_chinensis	RchiOBHm_Chr4g0429071 RchiOBHm_Chr7g0188951
rosa_laevigata	RLG00000004647 RLG00000007099
rosa_multiflora	Rmu_co8506825.1_g000001 Rmu_sc0001753.1_g000029 Rmu_sc0008629.1_g000021 Rmu_ssc0000113.1_g000005
rosa_roxburghii	Rroxscaffold_3G00265910 Rroxscaffold_5G00370710
rosa_rugosa	Rorug04G0232700 Rorug04G0232800 Rorug04G0232900 Rorug04G0232900 Rorug06G0495100
rosa_samantha	Rh4AG288500 Rh4BG294700 Rh4CG310200 Rh4DG291600 Rh7BG101900 Rh7CG103200
rosa_wichuraiana	Rw4G025010 Rw7G008600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	663
AcsI	RAATTY	3 cut(s)	50, 124, 504
AcuI	CTGAAG	1 cut(s)	117
AfaI	GTAC	4 cut(s)	83, 381, 559, 797
AfiI	CCNNNNNNNGG	1 cut(s)	482
AgsI	TTSAA	3 cut(s)	55, 224, 632
AjnI	CCWGG	1 cut(s)	456
AluBI	AGCT	2 cut(s)	15, 713
AluI	AGCT	2 cut(s)	15, 713
Alw26I	GTCTC	1 cut(s)	96
AlwNI	CAGNNNCTG	1 cut(s)	624
Ama87I	CYCGRG	1 cut(s)	399
AoxI	GGCC	1 cut(s)	703
ApeKI	GCWGC	2 cut(s)	423, 724
ApoI	RAATTY	3 cut(s)	50, 124, 504
AseI	ATTAAT	1 cut(s)	101
AspS9I	GGNCC	1 cut(s)	182
AsuHPI	GGTGA	2 cut(s)	497, 583
AsuII	TTCGAA	1 cut(s)	120
AvaI	CYCGRG	1 cut(s)	399
AvaII	GGWCC	1 cut(s)	182
BbvI	GCAGC	2 cut(s)	435, 736
BccI	CCATC	2 cut(s)	645, 794
BciT130I	CCWGG	1 cut(s)	458
BclI	TGATCA	1 cut(s)	246
BcoDI	GTCTC	1 cut(s)	96
BisI	GCNGC	2 cut(s)	424, 725
BlsI	GCNGC	2 cut(s)	425, 726
BmcAI	AGTACT	2 cut(s)	83, 797
Bme1390I	CCNGG	1 cut(s)	458
Bme18I	GGWCC	1 cut(s)	182
BmeT110I	CYCGRG	1 cut(s)	399
BmgT120I	GGNCC	1 cut(s)	182
BmrFI	CCNGG	1 cut(s)	458
BmsI	GCATC	3 cut(s)	100, 193, 459
BoxI	GACNNNNGTC	1 cut(s)	134
Bpu14I	TTCGAA	1 cut(s)	120
BpuEI	CTTGAG	1 cut(s)	31
BsaI	GGTCTC	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	1 cut(s)	482
Bse1I	ACTGG	4 cut(s)	89, 439, 476, 573
Bse3DI	GCAATG	1 cut(s)	277
BseBI	CCWGG	1 cut(s)	458
BseGI	GGATG	3 cut(s)	115, 435, 656
BseLI	CCNNNNNNNGG	1 cut(s)	482
BseMI	GCAATG	1 cut(s)	277
BseMII	CTCAG	1 cut(s)	752
BseNI	ACTGG	4 cut(s)	89, 439, 476, 573
BseRI	GAGGAG	1 cut(s)	711
BseXI	GCAGC	2 cut(s)	435, 736
Bsh1285I	CGRYCG	1 cut(s)	291
BshFI	GGCC	1 cut(s)	705
BsiEI	CGRYCG	1 cut(s)	291
BsiHKCI	CYCGRG	1 cut(s)	399
BslFI	GGGAC	1 cut(s)	218
BslI	CCNNNNNNNGG	1 cut(s)	482
BsmAI	GTCTC	1 cut(s)	96
BsmFI	GGGAC	1 cut(s)	218
BsnI	GGCC	1 cut(s)	705
Bso31I	GGTCTC	1 cut(s)	96
BsoBI	CYCGRG	1 cut(s)	399
Bsp119I	TTCGAA	1 cut(s)	120
Bsp1407I	TGTACA	1 cut(s)	379
Bsp143I	GATC	3 cut(s)	246, 529, 734
BspANI	GGCC	1 cut(s)	705
BspCNI	CTCAG	1 cut(s)	753
BspT104I	TTCGAA	1 cut(s)	120
BspTNI	GGTCTC	1 cut(s)	96
BsrDI	GCAATG	1 cut(s)	277
BsrGI	TGTACA	1 cut(s)	379
BsrI	ACTGG	4 cut(s)	89, 439, 476, 573
BssMI	GATC	3 cut(s)	246, 529, 734
BssNAI	GTATAC	1 cut(s)	664
Bst1107I	GTATAC	1 cut(s)	664
Bst2UI	CCWGG	1 cut(s)	458
Bst4CI	ACNGT	4 cut(s)	355, 524, 620, 668
BstAUI	TGTACA	1 cut(s)	379
BstBI	TTCGAA	1 cut(s)	120
BstC8I	GCNNGC	2 cut(s)	26, 703
BstDEI	CTNAG	3 cut(s)	188, 761, 792
BstEII	GGTNACC	1 cut(s)	485
BstF5I	GGATG	3 cut(s)	115, 435, 656
BstKTI	GATC	3 cut(s)	249, 532, 737
BstMAI	GTCTC	1 cut(s)	96
BstMBI	GATC	3 cut(s)	246, 529, 734
BstMCI	CGRYCG	1 cut(s)	291
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 203
BstNI	CCWGG	1 cut(s)	458
BstPAI	GACNNNNGTC	1 cut(s)	134
BstPI	GGTNACC	1 cut(s)	485
BstSCI	CCNGG	1 cut(s)	456
BstV1I	GCAGC	2 cut(s)	435, 736
BstZ17I	GTATAC	1 cut(s)	664
BsuRI	GGCC	1 cut(s)	705
BtsCI	GGATG	3 cut(s)	115, 435, 656
BtsI	GCAGTG	1 cut(s)	773
BtsIMutI	CAGTG	5 cut(s)	529, 566, 625, 673, 773
Cac8I	GCNNGC	2 cut(s)	26, 703
CaiI	CAGNNNCTG	1 cut(s)	624
Cfr13I	GGNCC	1 cut(s)	182
CseI	GACGC	1 cut(s)	680
Csp6I	GTAC	4 cut(s)	82, 380, 558, 796
CviAII	CATG	4 cut(s)	95, 395, 448, 707
CviJI	RGCY	9 cut(s)	15, 192, 296, 598, 705, 713, 727, 772, 785
CviKI_1	RGCY	9 cut(s)	15, 192, 296, 598, 705, 713, 727, 772, 785
CviQI	GTAC	4 cut(s)	82, 380, 558, 796
DdeI	CTNAG	3 cut(s)	188, 761, 792
DpnI	GATC	3 cut(s)	248, 531, 736
DpnII	GATC	3 cut(s)	246, 529, 734
Eco31I	GGTCTC	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	182
Eco57I	CTGAAG	1 cut(s)	117
Eco88I	CYCGRG	1 cut(s)	399
Eco91I	GGTNACC	1 cut(s)	485
EcoO65I	GGTNACC	1 cut(s)	485
EcoRI	GAATTC	2 cut(s)	50, 504
EcoRII	CCWGG	1 cut(s)	456
FaeI	CATG	4 cut(s)	98, 398, 451, 710
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	4 cut(s)	94, 394, 447, 706
FbaI	TGATCA	1 cut(s)	246
FblI	GTMKAC	1 cut(s)	663
Fnu4HI	GCNGC	2 cut(s)	424, 725
FokI	GGATG	3 cut(s)	122, 422, 663
Fsp4HI	GCNGC	2 cut(s)	424, 725
GluI	GCNGC	2 cut(s)	424, 725
HaeIII	GGCC	1 cut(s)	705
HgaI	GACGC	1 cut(s)	680
Hin1II	CATG	4 cut(s)	98, 398, 451, 710
HinfI	GANTC	2 cut(s)	402, 536
HphI	GGTGA	2 cut(s)	497, 583
Hpy166II	GTNNAC	4 cut(s)	185, 560, 574, 664
Hpy188I	TCNGA	4 cut(s)	61, 151, 344, 762
Hpy188III	TCNNGA	3 cut(s)	501, 533, 632
Hpy8I	GTNNAC	4 cut(s)	185, 560, 574, 664
HpyAV	CCTTC	1 cut(s)	127
HpyCH4III	ACNGT	4 cut(s)	355, 524, 620, 668
HpyCH4IV	ACGT	2 cut(s)	261, 609
HpyCH4V	TGCA	3 cut(s)	28, 206, 423
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 203
HpyF3I	CTNAG	3 cut(s)	188, 761, 792
HpySE526I	ACGT	2 cut(s)	261, 609
Hsp92II	CATG	4 cut(s)	98, 398, 451, 710
Ksp22I	TGATCA	1 cut(s)	246
Kzo9I	GATC	3 cut(s)	246, 529, 734
LmnI	GCTCC	2 cut(s)	698, 718
Lsp1109I	GCAGC	2 cut(s)	435, 736
LweI	GCATC	3 cut(s)	100, 193, 459
MaeII	ACGT	2 cut(s)	261, 609
MaeIII	GTNAC	7 cut(s)	3, 140, 262, 355, 403, 485, 668
MalI	GATC	3 cut(s)	248, 531, 736
MboI	GATC	3 cut(s)	246, 529, 734
MboII	GAAGA	1 cut(s)	337
MluCI	AATT	9 cut(s)	50, 55, 124, 153, 218, 409, 504, 516, 717
MlyI	GAGTC	1 cut(s)	411
MmeI	TCCRAC	1 cut(s)	331
MnlI	CCTC	6 cut(s)	51, 286, 379, 689, 758, 763
MseI	TTAA	3 cut(s)	101, 365, 515
MspR9I	CCNGG	1 cut(s)	458
MvaI	CCWGG	1 cut(s)	458
MwoI	GCNNNNNNNGC	2 cut(s)	21, 203
NdeII	GATC	3 cut(s)	246, 529, 734
NlaIII	CATG	4 cut(s)	98, 398, 451, 710
NmuCI	GTSAC	4 cut(s)	3, 403, 485, 668
NspV	TTCGAA	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	536
PflFI	GACNNNGTC	1 cut(s)	491
PkrI	GCNGC	2 cut(s)	425, 726
PleI	GAGTC	1 cut(s)	410
PpsI	GAGTC	1 cut(s)	410
PshAI	GACNNNNGTC	1 cut(s)	134
PshBI	ATTAAT	1 cut(s)	101
Psp6I	CCWGG	1 cut(s)	456
PspEI	GGTNACC	1 cut(s)	485
PspGI	CCWGG	1 cut(s)	456
PspPI	GGNCC	1 cut(s)	182
PsrI	GAACNNNNNNTAC	2 cut(s)	599, 631
PstNI	CAGNNNCTG	1 cut(s)	624
PsyI	GACNNNGTC	1 cut(s)	491
RsaI	GTAC	4 cut(s)	83, 381, 559, 797
RsaNI	GTAC	4 cut(s)	82, 380, 558, 796
SaqAI	TTAA	3 cut(s)	101, 365, 515
SatI	GCNGC	2 cut(s)	424, 725
Sau3AI	GATC	3 cut(s)	246, 529, 734
Sau96I	GGNCC	1 cut(s)	182
ScaI	AGTACT	2 cut(s)	83, 797
SchI	GAGTC	1 cut(s)	411
ScrFI	CCNGG	1 cut(s)	458
SfaNI	GCATC	3 cut(s)	100, 193, 459
SfuI	TTCGAA	1 cut(s)	120
SinI	GGWCC	1 cut(s)	182
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
Sse9I	AATT	9 cut(s)	50, 55, 124, 153, 218, 409, 504, 516, 717
SspI	AATATT	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	456
TaaI	ACNGT	4 cut(s)	355, 524, 620, 668
TaiI	ACGT	2 cut(s)	264, 612
TaqI	TCGA	2 cut(s)	120, 291
TaqII	GACCGA	1 cut(s)	277
TasI	AATT	9 cut(s)	50, 55, 124, 153, 218, 409, 504, 516, 717
TatI	WGTACW	4 cut(s)	81, 379, 557, 795
TfiI	GAWTC	1 cut(s)	536
Tru1I	TTAA	3 cut(s)	101, 365, 515
Tru9I	TTAA	3 cut(s)	101, 365, 515
TscAI	CASTG	5 cut(s)	529, 573, 625, 673, 780
TseFI	GTSAC	4 cut(s)	3, 403, 485, 668
TseI	GCWGC	2 cut(s)	423, 724
Tsp45I	GTSAC	4 cut(s)	3, 403, 485, 668
TspDTI	ATGAA	4 cut(s)	363, 383, 464, 723
TspGWI	ACGGA	2 cut(s)	577, 591
TspRI	CASTG	5 cut(s)	529, 573, 625, 673, 780
Tth111I	GACNNNGTC	1 cut(s)	491
VpaK11BI	GGWCC	1 cut(s)	182
VspI	ATTAAT	1 cut(s)	101
XapI	RAATTY	3 cut(s)	50, 124, 504
XmiI	GTMKAC	1 cut(s)	663
ZrmI	AGTACT	2 cut(s)	83, 797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.