RchiOBHm_Chr7g0188951

Belongs to the peptidase S10 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
8322665 .. 8325282
2618 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16876

Sequence Viewer

Length: 1404 bp
ATGAAGACAATGGCAATGGCTCTACTACTTGTGCTTCAGCTGTGCTTCATTTCCATGGAGTTTGTTGAGTCCTCATCTCATCACTATGATCACAAGATAGTTAGGCTTCCAGGACAACCCAGTGTGGACTTTCAACACTTTTCAGGTTATATTTCTGTGAGCGATCATCAGAAAAACCACAAAGCTCTATTTTACTACTTTGCTGAAGCAGAAAAAAACCCAGCTTCAAAGCCTTTGGTCCTCTGGTTAAATGGAGGTCCTGGTTGTTCTTCTGTTGGAGTAGGGGCTTTCTCTGAAAATGGACCTTTTAGACCAGATGGTCAAGTCCTGGTTAGAAATGAGTACAGCTGGAATATAGAGGCTAATATGTTGTATTTAGAGACACCAGTTGGTGTGGGATTCTCTTATTCTAGACATAGCTCCAACGATGTGGCAGTGGATGATGAAGCAACAGCCAGGGACAATCTTGTATTCTTACAACGCTGGTTCAACAAGTTCCCTCAATATAAGCACAGAGATTTGTTTCTAACTGGAGAAAGTTATGCAGGTCACTACATCCCTCAACTTGCAAAGCTTATGGTTGAAGCTAACAGCAAAGAGAAGTTGTTCAATCTAAAAGGACTAGCTTTGGGTAACCCTGTCCTAGAATTCGCCACCGACTTAAATTCAAGAGCTGAGTATTTCTGGTCTCATGGACTAATATCAGACTCAACATACAGAATGTTCACTTCTGTTTGCAACTATTCGCGCTACGTGAGTGAGTACTATAGAGACTCGGTTTCACCTGTTTGTTCAAGAGTTATGAACCAAGTGAGCATAGAAACCAGTAAATTTGTGGATAAGTATGATGTCACTCTTGACGTCTGCATTTCATCTGTGCTCTCACAGTCAAAGGCTATAAGCCCCAACCAAATGACACAGAGGATTGATGTGTGTGTAGAAGACAAGATTGTAAGTTACTTGAACCGAAAAGATGTGCAGAAGGCTCTCCATGCCAAGCTTGTAGGGGTTCGAAGATGGGATGTTTGCAGCGATGATACTAGCATTTTGGACTACCAAATGCTCGACCTGGAAATCCCTACAATCTCACTAGTTGGATCTATTGTCAAGGCCGGAATTCCAGTGTTAGTTTACAGTGGAGATCAGGATTCTGCAATTCCATTGACGGGAAGCCGAACCTTGGTCGACAGATTGGCAAGGGAGTTAGGACTGAACACCACTGTCCCTTATAGAGTTTGGTTTCAGGGAAAACAGGTTGGTGGATGGACTCAAGTTTATGGGAACATACTTTCATTTGCAACCATCAGAGGTGCCTCTCATGAAGCTCCATTCTCACAGCCTGAGAGATCACTCATGCTATTCAAGTCATTTCTTCAAGGCAGGGCTCTACCTCTAGTATTCTGA

Protein Analysis

467

Amino Acids

52.59

Weight (kDa)

6.64

Isoelectric Point (pI)

37.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 37 - 460 6.6e-127 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 318
AatII GACGTC 1 cut(s) 864
Acc36I ACCTGC 1 cut(s) 536
AccB1I GGYRCC 1 cut(s) 1310
AccI GTMKAC 1 cut(s) 1185
AccII CGCG 1 cut(s) 748
AclWI GGATC 1 cut(s) 1105
AcsI RAATTY 4 cut(s) 647, 664, 830, 1116
AcuI CTGAAG 2 cut(s) 20, 225
AcyI GRCGYC 1 cut(s) 861
AfaI GTAC 2 cut(s) 344, 764
AfiI CCNNNNNNNGG 2 cut(s) 1166, 1180
AhlI ACTAGT 1 cut(s) 1090
AjnI CCWGG 5 cut(s) 109, 259, 327, 455, 1068
Alw21I GWGCWC 1 cut(s) 882
Alw26I GTCTC 3 cut(s) 374, 693, 765
AlwI GGATC 1 cut(s) 1105
AoxI GGCC 1 cut(s) 1110
ApeKI GCWGC 1 cut(s) 1029
ApoI RAATTY 4 cut(s) 647, 664, 830, 1116
Asp700I GAANNNNTTC 1 cut(s) 605
AspLEI GCGC 1 cut(s) 750
AspS9I GGNCC 3 cut(s) 238, 257, 302
AsuHPI GGTGA 1 cut(s) 774
AsuII TTCGAA 1 cut(s) 1012
AvaII GGWCC 3 cut(s) 238, 257, 302
BanI GGYRCC 1 cut(s) 1310
BanII GRGCYC 1 cut(s) 1387
BbsI GAAGAC 2 cut(s) 11, 948
Bbv12I GWGCWC 1 cut(s) 882
BbvI GCAGC 1 cut(s) 1041
BccI CCATC 4 cut(s) 311, 1011, 1257, 1310
BciT130I CCWGG 5 cut(s) 111, 261, 329, 457, 1070
BclI TGATCA 1 cut(s) 88
BcoDI GTCTC 3 cut(s) 374, 693, 765
BcuI ACTAGT 1 cut(s) 1090
BfaI CTAG 6 cut(s) 411, 623, 644, 1041, 1091, 1394
BfmI CTRYAG 1 cut(s) 766
BfuAI ACCTGC 1 cut(s) 536
BisI GCNGC 1 cut(s) 1030
BlsI GCNGC 1 cut(s) 1031
BmcAI AGTACT 1 cut(s) 764
Bme1390I CCNGG 5 cut(s) 111, 261, 329, 457, 1070
Bme18I GGWCC 3 cut(s) 238, 257, 302
BmgT120I GGNCC 3 cut(s) 238, 257, 302
BmiI GGNNCC 1 cut(s) 1312
BmrFI CCNGG 5 cut(s) 111, 261, 329, 457, 1070
BmrI ACTGGG 1 cut(s) 114
BmuI ACTGGG 1 cut(s) 114
BpiI GAAGAC 2 cut(s) 11, 948
BpmI CTGGAG 1 cut(s) 552
Bpu14I TTCGAA 1 cut(s) 1012
BpuEI CTTGAG 1 cut(s) 1254
BsaAI YACGTR 1 cut(s) 754
BsaHI GRCGYC 1 cut(s) 861
BsaI GGTCTC 1 cut(s) 693
BsaJI CCNNGG 3 cut(s) 54, 456, 1179
Bsc4I CCNNNNNNNGG 2 cut(s) 1166, 1180
Bse1I ACTGG 5 cut(s) 120, 386, 535, 825, 1121
Bse3DI GCAATG 1 cut(s) 21
BseBI CCWGG 5 cut(s) 111, 261, 329, 457, 1070
BseDI CCNNGG 3 cut(s) 54, 456, 1179
BseGI GGATG 4 cut(s) 445, 555, 1027, 1268
BseLI CCNNNNNNNGG 2 cut(s) 1166, 1180
BseMI GCAATG 1 cut(s) 21
BseMII CTCAG 2 cut(s) 666, 1332
BseNI ACTGG 5 cut(s) 120, 386, 535, 825, 1121
BseXI GCAGC 1 cut(s) 1041
BseYI CCCAGC 1 cut(s) 220
BsgI GTGCAG 1 cut(s) 998
Bsh1236I CGCG 1 cut(s) 748
BshFI GGCC 1 cut(s) 1112
BshNI GGYRCC 1 cut(s) 1310
BsiHKAI GWGCWC 1 cut(s) 882
BsiSI CCGG 1 cut(s) 1113
BslFI GGGAC 2 cut(s) 473, 1208
BslI CCNNNNNNNGG 2 cut(s) 1166, 1180
BsmAI GTCTC 3 cut(s) 374, 693, 765
BsmFI GGGAC 2 cut(s) 473, 1208
BsnI GGCC 1 cut(s) 1112
Bso31I GGTCTC 1 cut(s) 693
Bsp119I TTCGAA 1 cut(s) 1012
Bsp1286I GDGCHC 2 cut(s) 882, 1387
Bsp143I GATC 5 cut(s) 88, 163, 1097, 1141, 1346
Bsp19I CCATGG 1 cut(s) 54
BspANI GGCC 1 cut(s) 1112
BspCNI CTCAG 2 cut(s) 667, 1333
BspFNI CGCG 1 cut(s) 748
BspHI TCATGA 1 cut(s) 1318
BspLI GGNNCC 1 cut(s) 1312
BspMI ACCTGC 1 cut(s) 536
BspPI GGATC 1 cut(s) 1105
BspT104I TTCGAA 1 cut(s) 1012
BspT107I GGYRCC 1 cut(s) 1310
BspTNI GGTCTC 1 cut(s) 693
BsrDI GCAATG 1 cut(s) 21
BsrI ACTGG 5 cut(s) 120, 386, 535, 825, 1121
BssECI CCNNGG 3 cut(s) 54, 456, 1179
BssMI GATC 5 cut(s) 88, 163, 1097, 1141, 1346
BssNI GRCGYC 1 cut(s) 861
BssT1I CCWWGG 2 cut(s) 54, 1179
Bst2UI CCWGG 5 cut(s) 111, 261, 329, 457, 1070
Bst4CI ACNGT 3 cut(s) 888, 1136, 1222
BstACI GRCGYC 1 cut(s) 861
BstBAI YACGTR 1 cut(s) 754
BstBI TTCGAA 1 cut(s) 1012
BstDEI CTNAG 2 cut(s) 675, 1341
BstDSI CCRYGG 1 cut(s) 54
BstEII GGTNACC 1 cut(s) 632
BstF5I GGATG 4 cut(s) 445, 555, 1027, 1268
BstFNI CGCG 1 cut(s) 748
BstHHI GCGC 1 cut(s) 750
BstKTI GATC 5 cut(s) 91, 166, 1100, 1144, 1349
BstMAI GTCTC 3 cut(s) 374, 693, 765
BstMBI GATC 5 cut(s) 88, 163, 1097, 1141, 1346
BstMWI GCNNNNNNNGC 1 cut(s) 992
BstNI CCWGG 5 cut(s) 111, 261, 329, 457, 1070
BstPI GGTNACC 1 cut(s) 632
BstSCI CCNGG 5 cut(s) 109, 259, 327, 455, 1068
BstSFI CTRYAG 1 cut(s) 766
BstUI CGCG 1 cut(s) 748
BstV1I GCAGC 1 cut(s) 1041
BstV2I GAAGAC 2 cut(s) 11, 948
BstX2I RGATCY 1 cut(s) 1097
BstXI CCANNNNNNTGG 1 cut(s) 430
BstYI RGATCY 1 cut(s) 1097
BsuRI GGCC 1 cut(s) 1112
BtgI CCRYGG 1 cut(s) 54
BtgZI GCGATG 1 cut(s) 1047
BtsCI GGATG 4 cut(s) 445, 555, 1027, 1268
BtsI GCAGTG 1 cut(s) 441
BtsIMutI CAGTG 5 cut(s) 127, 441, 1128, 1141, 1218
BveI ACCTGC 1 cut(s) 536
CciI TCATGA 1 cut(s) 1318
CfoI GCGC 1 cut(s) 750
Cfr13I GGNCC 3 cut(s) 238, 257, 302
Csp6I GTAC 2 cut(s) 343, 763
CviAII CATG 5 cut(s) 55, 692, 992, 1319, 1354
CviQI GTAC 2 cut(s) 343, 763
DdeI CTNAG 2 cut(s) 675, 1341
DpnI GATC 5 cut(s) 90, 165, 1099, 1143, 1348
DpnII GATC 5 cut(s) 88, 163, 1097, 1141, 1346
DrdI GACNNNNNNGTC 1 cut(s) 318
DseDI GACNNNNNNGTC 1 cut(s) 318
Eco130I CCWWGG 2 cut(s) 54, 1179
Eco24I GRGCYC 1 cut(s) 1387
Eco31I GGTCTC 1 cut(s) 693
Eco47I GGWCC 3 cut(s) 238, 257, 302
Eco57I CTGAAG 2 cut(s) 20, 225
Eco91I GGTNACC 1 cut(s) 632
EcoO109I RGGNCCY 1 cut(s) 257
EcoO65I GGTNACC 1 cut(s) 632
EcoRI GAATTC 2 cut(s) 647, 1116
EcoRII CCWGG 5 cut(s) 109, 259, 327, 455, 1068
EcoT14I CCWWGG 2 cut(s) 54, 1179
EcoT38I GRGCYC 1 cut(s) 1387
ErhI CCWWGG 2 cut(s) 54, 1179
FaeI CATG 5 cut(s) 58, 695, 995, 1322, 1357
FaqI GGGAC 2 cut(s) 473, 1208
FatI CATG 5 cut(s) 54, 691, 991, 1318, 1353
FbaI TGATCA 1 cut(s) 88
FblI GTMKAC 1 cut(s) 1185
Fnu4HI GCNGC 1 cut(s) 1030
FokI GGATG 4 cut(s) 452, 542, 1034, 1275
FriOI GRGCYC 1 cut(s) 1387
Fsp4HI GCNGC 1 cut(s) 1030
FspBI CTAG 6 cut(s) 411, 623, 644, 1041, 1091, 1394
GlaI GCGC 1 cut(s) 749
GluI GCNGC 1 cut(s) 1030
GsaI CCCAGC 1 cut(s) 224
GsuI CTGGAG 1 cut(s) 552
HaeIII GGCC 1 cut(s) 1112
HapII CCGG 1 cut(s) 1113
HhaI GCGC 1 cut(s) 750
Hin1I GRCGYC 1 cut(s) 861
Hin1II CATG 5 cut(s) 58, 695, 995, 1322, 1357
Hin6I GCGC 1 cut(s) 748
HinP1I GCGC 1 cut(s) 748
HincII GTYRAC 1 cut(s) 1186
HindII GTYRAC 1 cut(s) 1186
HindIII AAGCTT 2 cut(s) 572, 998
HinfI GANTC 6 cut(s) 68, 399, 707, 773, 1148, 1267
HpaII CCGG 1 cut(s) 1113
HphI GGTGA 1 cut(s) 774
Hpy166II GTNNAC 4 cut(s) 127, 726, 1132, 1186
Hpy188I TCNGA 5 cut(s) 171, 295, 706, 1307, 1403
Hpy188III TCNNGA 6 cut(s) 411, 669, 795, 857, 1145, 1319
Hpy8I GTNNAC 4 cut(s) 127, 726, 1132, 1186
HpyAV CCTTC 1 cut(s) 976
HpyCH4III ACNGT 3 cut(s) 888, 1136, 1222
HpyCH4IV ACGT 2 cut(s) 753, 861
HpyCH4V TGCA 8 cut(s) 545, 569, 738, 867, 979, 1029, 1154, 1298
HpyF10VI GCNNNNNNNGC 1 cut(s) 992
HpyF3I CTNAG 2 cut(s) 675, 1341
HpySE526I ACGT 2 cut(s) 753, 861
Hsp92I GRCGYC 1 cut(s) 861
Hsp92II CATG 5 cut(s) 58, 695, 995, 1322, 1357
HspAI GCGC 1 cut(s) 748
Ksp22I TGATCA 1 cut(s) 88
Kzo9I GATC 5 cut(s) 88, 163, 1097, 1141, 1346
LmnI GCTCC 2 cut(s) 425, 1330
Lsp1109I GCAGC 1 cut(s) 1041
MaeI CTAG 6 cut(s) 411, 623, 644, 1041, 1091, 1394
MaeII ACGT 2 cut(s) 753, 861
MaeIII GTNAC 4 cut(s) 548, 632, 850, 956
MalI GATC 5 cut(s) 90, 165, 1099, 1143, 1348
MboI GATC 5 cut(s) 88, 163, 1097, 1141, 1346
MboII GAAGA 5 cut(s) 16, 261, 953, 1026, 1364
MflI RGATCY 1 cut(s) 1097
MhlI GDGCHC 2 cut(s) 882, 1387
MluCI AATT 5 cut(s) 647, 664, 830, 1116, 1155
MlyI GAGTC 4 cut(s) 77, 701, 767, 1261
MmeI TCCRAC 3 cut(s) 256, 447, 1075
MroXI GAANNNNTTC 1 cut(s) 605
MseI TTAA 2 cut(s) 248, 662
MslI CAYNNNNRTG 2 cut(s) 53, 84
MspA1I CMGCKG 2 cut(s) 40, 348
MspI CCGG 1 cut(s) 1113
MspR9I CCNGG 5 cut(s) 111, 261, 329, 457, 1070
MvaI CCWGG 5 cut(s) 111, 261, 329, 457, 1070
MvnI CGCG 1 cut(s) 748
MwoI GCNNNNNNNGC 1 cut(s) 992
NcoI CCATGG 1 cut(s) 54
NdeII GATC 5 cut(s) 88, 163, 1097, 1141, 1346
NlaIII CATG 5 cut(s) 58, 695, 995, 1322, 1357
NlaIV GGNNCC 1 cut(s) 1312
NmuCI GTSAC 2 cut(s) 548, 850
NspV TTCGAA 1 cut(s) 1012
PagI TCATGA 1 cut(s) 1318
PdmI GAANNNNTTC 1 cut(s) 605
PfeI GAWTC 2 cut(s) 399, 1148
PfoI TCCNGGA 1 cut(s) 109
PkrI GCNGC 1 cut(s) 1031
PleI GAGTC 4 cut(s) 76, 701, 767, 1261
PpsI GAGTC 4 cut(s) 76, 701, 767, 1261
Ppu21I YACGTR 1 cut(s) 754
PpuMI RGGWCCY 1 cut(s) 257
Psp5II RGGWCCY 1 cut(s) 257
Psp6I CCWGG 5 cut(s) 109, 259, 327, 455, 1068
PspEI GGTNACC 1 cut(s) 632
PspFI CCCAGC 1 cut(s) 220
PspGI CCWGG 5 cut(s) 109, 259, 327, 455, 1068
PspN4I GGNNCC 1 cut(s) 1312
PspPI GGNCC 3 cut(s) 238, 257, 302
PspPPI RGGWCCY 1 cut(s) 257
PsuI RGATCY 1 cut(s) 1097
PvuII CAGCTG 2 cut(s) 40, 348
RsaI GTAC 2 cut(s) 344, 764
RsaNI GTAC 2 cut(s) 343, 763
RseI CAYNNNNRTG 2 cut(s) 53, 84
SalI GTCGAC 1 cut(s) 1184
SaqAI TTAA 2 cut(s) 248, 662
SatI GCNGC 1 cut(s) 1030
Sau3AI GATC 5 cut(s) 88, 163, 1097, 1141, 1346
Sau96I GGNCC 3 cut(s) 238, 257, 302
ScaI AGTACT 1 cut(s) 764
SchI GAGTC 4 cut(s) 77, 701, 767, 1261
ScrFI CCNGG 5 cut(s) 111, 261, 329, 457, 1070
SduI GDGCHC 2 cut(s) 882, 1387
SfcI CTRYAG 1 cut(s) 766
SfuI TTCGAA 1 cut(s) 1012
SinI GGWCC 3 cut(s) 238, 257, 302
SmiMI CAYNNNNRTG 2 cut(s) 53, 84
SmlI CTYRAG 1 cut(s) 1269
SmoI CTYRAG 1 cut(s) 1269
SpeI ACTAGT 1 cut(s) 1090
Sse9I AATT 5 cut(s) 647, 664, 830, 1116, 1155
SspMI CTAG 6 cut(s) 411, 623, 644, 1041, 1091, 1394
StyD4I CCNGG 5 cut(s) 109, 259, 327, 455, 1068
StyI CCWWGG 2 cut(s) 54, 1179
TaaI ACNGT 3 cut(s) 888, 1136, 1222
TaiI ACGT 2 cut(s) 756, 864
TaqI TCGA 3 cut(s) 1012, 1065, 1185
TasI AATT 5 cut(s) 647, 664, 830, 1116, 1155
TatI WGTACW 2 cut(s) 342, 762
TfiI GAWTC 2 cut(s) 399, 1148
Tru1I TTAA 2 cut(s) 248, 662
Tru9I TTAA 2 cut(s) 248, 662
TscAI CASTG 5 cut(s) 127, 441, 1128, 1141, 1225
TseFI GTSAC 2 cut(s) 548, 850
TseI GCWGC 1 cut(s) 1029
Tsp45I GTSAC 2 cut(s) 548, 850
TspDTI ATGAA 7 cut(s) 17, 37, 459, 818, 861, 1281, 1335
TspRI CASTG 5 cut(s) 127, 441, 1128, 1141, 1225
VpaK11BI GGWCC 3 cut(s) 238, 257, 302
XapI RAATTY 4 cut(s) 647, 664, 830, 1116
XbaI TCTAGA 1 cut(s) 410
XcmI CCANNNNNNNNNTGG 1 cut(s) 832
XmiI GTMKAC 1 cut(s) 1185
XmnI GAANNNNTTC 1 cut(s) 605
XspI CTAG 6 cut(s) 411, 623, 644, 1041, 1091, 1394
ZraI GACGTC 1 cut(s) 862
ZrmI AGTACT 1 cut(s) 764
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.