FvH4_4g22840

Belongs to the peptidase S10 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
25496219 .. 25499495
3277 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g22840.t4

Sequence Viewer

Length: 1560 bp
ATGCCCCAAAGAAAACAGCTTGGAAAAAATAGTAATAATCAATTACAAAAAACAAGATATACCCAGCTTTATATAGAGCCCCCACTAAGCAGTATCCTCATTTCTCAGCAGACCCCCCAAAACCCAAATCAATCCTTCTCTCAAGGTTGTTTTGCTCTCATTCTTCTTCTCTGCACTAAACCCATGATTTCTCTGCCATGGAAAACCATTGCAATGGCTTTGGTTTTGCTTCAAATCACAGAAGCCTCTCCTCTTTCTAGACTTGATAGAATTACCCGGTTGCCTGGTCAGCCCCAAGTCGGGTTCCAACACTACTCGGGTTATGTGACCGTCGATGAGAAGAAACAGAGAGCTCTGTTTTACTACTTTGCTGAAGCTGAAGTTGAACCAGCTTCAAAGCCTCTGGTTCTCTGGCTCAATGGAGGGCCTGGTTGTTCTTCTCTGGGAGTTGGAGCATTTTCTGAAAATGGACCATTTAGGCCTAGTGGAGAGGTACTGGTTAGAAATGAATATAGTTGGAACAGAGAAGCAAACATGCTGTACTTGGAGACACCAATTGGAGTTGGGTTCTCTTATTCAACTGATACCGCATCTTATGAGTCTGTAAATGACCGTATCACAGCCAGGGACAATCTGATGTTCTTACAAAAGTGGCTGGACAAATTCCCTCAATATAGAAACAGAAGCTTGTTTATTACTGGAGAAAGCTATGCTGGACATTATGTTCCCCAGCTAGCAGAACTCATGCTCCAATTCAGCAAGGAATATCACTTCAATCTAAAAGGAATTGCTTTGGGTAATCCAGTCCTTGAATATGCTACCGACTTCAATTCAAGATCCGAGTTCTTTTGGTCTCATGGATTGATATCAGATTCAACATACAAAATGTTCACTTCAGTTTGTAACTATTCCAGATATGTGAGTGAATATTATAGAGGCTCGGTTTCGCCTATTTGTTCCAAGGTGATGAGTCAAGTCAGCAGAGAAACTAGTAAATTTGTTGACAAGTATGATGTCACACTTGATGTTTGTATATCATCTGTGTTCTCCCAATCCAAAGTCCTCAGTCCCCAGCAAGTTACTGAGTCGATAGATGTATGCGTGGAAGATGAAACAGTAAATTATTTAAACAGGCTGGATGTGCAGAAGGCACTTCATGCTCGTCTTGTTGGTGTTCGGAAATGGGCAGTTTGCAGCAATGTATTGGATTATGAGCTGCTGGATTTGGAGATACCAACAATCAGCATCGTAGGCAAACTCATTAAGGCAGGAATTTCAGTCTTGGTTTACAGTGGGGACCAAGATTCTGTTATTCCATTGACAGGTAGTCGGACATTAGTTCATGGACTTGCAGAGGAACTAAAACTAAATACCACCGTTCCTTATAGAGTCTGGTTCGAGGGGCAGCAGGTTGGTGGGTGGACTCAAGTTTATGGTAATATGCTTTCCTTTGCCACCATTAGAGGAGCATCACATGAAGCACCATTCTCGCAGCCTGAGCGGTCACTTGTTTTGTTTAAATCATTTCTGGAGGGCCGACCGCTACCAGAAGCATTCTGA

Protein Analysis

520

Amino Acids

58.52

Weight (kDa)

6.68

Isoelectric Point (pI)

39.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 1 - 334 1.8e-84 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1399
AccBSI CCGCTC 1 cut(s) 1501
AciI CCGC 3 cut(s) 588, 1501, 1541
AclWI GGATC 1 cut(s) 831
AcsI RAATTY 3 cut(s) 662, 995, 1272
AcuI CTGAAG 3 cut(s) 393, 399, 879
AfaI GTAC 2 cut(s) 495, 542
AfiI CCNNNNNNNGG 3 cut(s) 299, 300, 1322
AgsI TTSAA 9 cut(s) 233, 386, 396, 579, 775, 812, 829, 834, 876
AhdI GACNNNNNGTC 1 cut(s) 1326
AhlI ACTAGT 1 cut(s) 989
AjnI CCWGG 3 cut(s) 283, 427, 623
AloI GAACNNNNNNTCC 4 cut(s) 708, 732, 740, 764
AluBI AGCT 9 cut(s) 19, 67, 353, 377, 392, 687, 708, 733, 1216
AluI AGCT 9 cut(s) 19, 67, 353, 377, 392, 687, 708, 733, 1216
Alw21I GWGCWC 1 cut(s) 355
Alw26I GTCTC 2 cut(s) 542, 858
AlwI GGATC 1 cut(s) 831
Ama87I CYCGRG 1 cut(s) 316
AoxI GGCC 3 cut(s) 425, 479, 1534
ApeKI GCWGC 4 cut(s) 1194, 1216, 1405, 1492
ApoI RAATTY 3 cut(s) 662, 995, 1272
AspS9I GGNCC 4 cut(s) 425, 470, 1297, 1534
AsuC2I CCSGG 1 cut(s) 277
AsuHPI GGTGA 1 cut(s) 976
AsuNHI GCTAGC 1 cut(s) 733
AvaI CYCGRG 1 cut(s) 316
AvaII GGWCC 2 cut(s) 470, 1297
BanII GRGCYC 2 cut(s) 81, 355
Bbv12I GWGCWC 1 cut(s) 355
BbvI GCAGC 4 cut(s) 1203, 1206, 1417, 1504
BcgI CGANNNNNNTGC 2 cut(s) 1470, 1504
BciT130I CCWGG 3 cut(s) 285, 429, 625
BciVI GTATCC 1 cut(s) 104
BcnI CCSGG 1 cut(s) 277
BcoDI GTCTC 2 cut(s) 542, 858
BcuI ACTAGT 1 cut(s) 989
BfaI CTAG 4 cut(s) 258, 483, 734, 990
BfuAI ACCTGC 1 cut(s) 1399
BfuI GTATCC 1 cut(s) 104
BisI GCNGC 4 cut(s) 1195, 1217, 1406, 1493
BlsI GCNGC 4 cut(s) 1196, 1218, 1407, 1494
Bme1390I CCNGG 4 cut(s) 277, 285, 429, 625
Bme18I GGWCC 2 cut(s) 470, 1297
BmeRI GACNNNNNGTC 1 cut(s) 1326
BmeT110I CYCGRG 1 cut(s) 316
BmgT120I GGNCC 4 cut(s) 425, 470, 1297, 1534
BmiI GGNNCC 2 cut(s) 305, 1298
BmrFI CCNGG 4 cut(s) 277, 285, 429, 625
BmsI GCATC 3 cut(s) 599, 1254, 1478
BmtI GCTAGC 1 cut(s) 737
BpmI CTGGAG 2 cut(s) 720, 1550
Bpu10I CCTNAGC 1 cut(s) 1497
BpuEI CTTGAG 2 cut(s) 126, 1410
BpuMI CCSGG 1 cut(s) 277
BsaBI GATNNNNATC 1 cut(s) 865
BsaI GGTCTC 1 cut(s) 858
BsaJI CCNNGG 3 cut(s) 197, 624, 960
BsaXI ACNNNNNCTCC 2 cut(s) 732, 762
Bsc4I CCNNNNNNNGG 3 cut(s) 299, 300, 1322
Bse1I ACTGG 3 cut(s) 501, 703, 803
Bse3DI GCAATG 3 cut(s) 207, 219, 1204
Bse8I GATNNNNATC 1 cut(s) 865
BseBI CCWGG 3 cut(s) 285, 429, 625
BseDI CCNNGG 3 cut(s) 197, 624, 960
BseGI GGATG 1 cut(s) 1144
BseJI GATNNNNATC 1 cut(s) 865
BseLI CCNNNNNNNGG 3 cut(s) 299, 300, 1322
BseMI GCAATG 3 cut(s) 207, 219, 1204
BseMII CTCAG 4 cut(s) 119, 1074, 1078, 1488
BseNI ACTGG 3 cut(s) 501, 703, 803
BseRI GAGGAG 2 cut(s) 240, 1479
BseXI GCAGC 4 cut(s) 1203, 1206, 1417, 1504
BseYI CCCAGC 3 cut(s) 63, 729, 1071
BsgI GTGCAG 2 cut(s) 157, 1163
Bsh1285I CGRYCG 1 cut(s) 1541
BshFI GGCC 3 cut(s) 427, 481, 1536
BsiEI CGRYCG 1 cut(s) 1541
BsiHKAI GWGCWC 1 cut(s) 355
BsiHKCI CYCGRG 1 cut(s) 316
BsiSI CCGG 1 cut(s) 277
BslFI GGGAC 3 cut(s) 641, 1053, 1310
BslI CCNNNNNNNGG 3 cut(s) 299, 300, 1322
BsmAI GTCTC 2 cut(s) 542, 858
BsmFI GGGAC 3 cut(s) 641, 1053, 1310
BsmI GAATGC 1 cut(s) 1553
BsnI GGCC 3 cut(s) 427, 481, 1536
Bso31I GGTCTC 1 cut(s) 858
BsoBI CYCGRG 1 cut(s) 316
Bsp1286I GDGCHC 2 cut(s) 81, 355
Bsp143I GATC 1 cut(s) 836
Bsp19I CCATGG 1 cut(s) 197
BspACI CCGC 3 cut(s) 588, 1501, 1541
BspANI GGCC 3 cut(s) 427, 481, 1536
BspCNI CTCAG 4 cut(s) 118, 1075, 1077, 1489
BspLI GGNNCC 2 cut(s) 305, 1298
BspMI ACCTGC 1 cut(s) 1399
BspOI GCTAGC 1 cut(s) 737
BspPI GGATC 1 cut(s) 831
BspTNI GGTCTC 1 cut(s) 858
BsrBI CCGCTC 1 cut(s) 1501
BsrDI GCAATG 3 cut(s) 207, 219, 1204
BsrI ACTGG 3 cut(s) 501, 703, 803
BssECI CCNNGG 3 cut(s) 197, 624, 960
BssMI GATC 1 cut(s) 836
BssT1I CCWWGG 2 cut(s) 197, 960
Bst2UI CCWGG 3 cut(s) 285, 429, 625
Bst4CI ACNGT 5 cut(s) 331, 614, 1117, 1292, 1378
BstAPI GCANNNNNTGC 1 cut(s) 1157
BstC8I GCNNGC 1 cut(s) 735
BstDEI CTNAG 5 cut(s) 86, 105, 1064, 1083, 1497
BstDSI CCRYGG 1 cut(s) 197
BstF5I GGATG 1 cut(s) 1144
BstKTI GATC 1 cut(s) 839
BstMAI GTCTC 2 cut(s) 542, 858
BstMBI GATC 1 cut(s) 836
BstMCI CGRYCG 1 cut(s) 1541
BstMWI GCNNNNNNNGC 5 cut(s) 289, 1141, 1157, 1251, 1498
BstNI CCWGG 3 cut(s) 285, 429, 625
BstNSI RCATGY 1 cut(s) 538
BstSCI CCNGG 4 cut(s) 275, 283, 427, 623
BstV1I GCAGC 4 cut(s) 1203, 1206, 1417, 1504
BstX2I RGATCY 1 cut(s) 836
BstXI CCANNNNNNTGG 1 cut(s) 214
BstYI RGATCY 1 cut(s) 836
BsuI GTATCC 1 cut(s) 104
BsuRI GGCC 3 cut(s) 427, 481, 1536
BtgI CCRYGG 1 cut(s) 197
BtsCI GGATG 1 cut(s) 1144
BtsIMutI CAGTG 1 cut(s) 1297
BveI ACCTGC 1 cut(s) 1399
Cac8I GCNNGC 1 cut(s) 735
Cfr13I GGNCC 4 cut(s) 425, 470, 1297, 1534
Csp6I GTAC 2 cut(s) 494, 541
CviAII CATG 8 cut(s) 184, 198, 535, 745, 857, 1157, 1343, 1475
CviQI GTAC 2 cut(s) 494, 541
DdeI CTNAG 5 cut(s) 86, 105, 1064, 1083, 1497
DpnI GATC 1 cut(s) 838
DpnII GATC 1 cut(s) 836
DraI TTTAAA 2 cut(s) 1128, 1519
DriI GACNNNNNGTC 1 cut(s) 1326
Eam1105I GACNNNNNGTC 1 cut(s) 1326
Ecl136II GAGCTC 1 cut(s) 353
Eco130I CCWWGG 2 cut(s) 197, 960
Eco147I AGGCCT 1 cut(s) 481
Eco24I GRGCYC 2 cut(s) 81, 355
Eco31I GGTCTC 1 cut(s) 858
Eco32I GATATC 1 cut(s) 867
Eco47I GGWCC 2 cut(s) 470, 1297
Eco53kI GAGCTC 1 cut(s) 353
Eco57I CTGAAG 3 cut(s) 393, 399, 879
Eco88I CYCGRG 1 cut(s) 316
EcoICRI GAGCTC 1 cut(s) 353
EcoO109I RGGNCCY 1 cut(s) 425
EcoRII CCWGG 3 cut(s) 283, 427, 623
EcoRV GATATC 1 cut(s) 867
EcoT14I CCWWGG 2 cut(s) 197, 960
EcoT38I GRGCYC 2 cut(s) 81, 355
ErhI CCWWGG 2 cut(s) 197, 960
FaeI CATG 8 cut(s) 187, 201, 538, 748, 860, 1160, 1346, 1478
FaqI GGGAC 3 cut(s) 641, 1053, 1310
FatI CATG 8 cut(s) 183, 197, 534, 744, 856, 1156, 1342, 1474
Fnu4HI GCNGC 4 cut(s) 1195, 1217, 1406, 1493
FokI GGATG 1 cut(s) 1151
FriOI GRGCYC 2 cut(s) 81, 355
Fsp4HI GCNGC 4 cut(s) 1195, 1217, 1406, 1493
FspBI CTAG 4 cut(s) 258, 483, 734, 990
GluI GCNGC 4 cut(s) 1195, 1217, 1406, 1493
GsaI CCCAGC 3 cut(s) 67, 733, 1075
GsuI CTGGAG 2 cut(s) 720, 1550
HaeIII GGCC 3 cut(s) 427, 481, 1536
HapII CCGG 1 cut(s) 277
Hin1II CATG 8 cut(s) 187, 201, 538, 748, 860, 1160, 1346, 1478
HincII GTYRAC 1 cut(s) 1003
HindII GTYRAC 1 cut(s) 1003
HindIII AAGCTT 1 cut(s) 685
HinfI GANTC 7 cut(s) 599, 872, 970, 1085, 1304, 1389, 1423
HpaII CCGG 1 cut(s) 277
HphI GGTGA 1 cut(s) 976
Hpy166II GTNNAC 4 cut(s) 891, 1003, 1288, 1422
Hpy188I TCNGA 7 cut(s) 463, 636, 841, 871, 1179, 1332, 1559
Hpy188III TCNNGA 4 cut(s) 258, 834, 912, 1529
Hpy8I GTNNAC 4 cut(s) 891, 1003, 1288, 1422
Hpy99I CGWCG 1 cut(s) 335
HpyAV CCTTC 2 cut(s) 145, 1141
HpyCH4III ACNGT 5 cut(s) 331, 614, 1117, 1292, 1378
HpyCH4V TGCA 5 cut(s) 174, 212, 1144, 1194, 1352
HpyF10VI GCNNNNNNNGC 5 cut(s) 289, 1141, 1157, 1251, 1498
HpyF3I CTNAG 5 cut(s) 86, 105, 1064, 1083, 1497
Hsp92II CATG 8 cut(s) 187, 201, 538, 748, 860, 1160, 1346, 1478
Kzo9I GATC 1 cut(s) 836
LmnI GCTCC 3 cut(s) 452, 753, 1466
Lsp1109I GCAGC 4 cut(s) 1203, 1206, 1417, 1504
LweI GCATC 3 cut(s) 599, 1254, 1478
MaeI CTAG 4 cut(s) 258, 483, 734, 990
MaeIII GTNAC 5 cut(s) 325, 902, 1015, 1078, 1503
MalI GATC 1 cut(s) 838
MbiI CCGCTC 1 cut(s) 1501
MboI GATC 1 cut(s) 836
MboII GAAGA 5 cut(s) 155, 158, 352, 429, 1118
MfeI CAATTG 1 cut(s) 555
MflI RGATCY 1 cut(s) 836
MhlI GDGCHC 2 cut(s) 81, 355
MlyI GAGTC 5 cut(s) 608, 979, 1094, 1398, 1417
MmeI TCCRAC 4 cut(s) 331, 430, 497, 1310
MseI TTAA 3 cut(s) 1127, 1263, 1518
MslI CAYNNNNRTG 1 cut(s) 212
MspI CCGG 1 cut(s) 277
MspR9I CCNGG 4 cut(s) 277, 285, 429, 625
MunI CAATTG 1 cut(s) 555
Mva1269I GAATGC 1 cut(s) 1553
MvaI CCWGG 3 cut(s) 285, 429, 625
MwoI GCNNNNNNNGC 5 cut(s) 289, 1141, 1157, 1251, 1498
NciI CCSGG 1 cut(s) 277
NcoI CCATGG 1 cut(s) 197
NdeII GATC 1 cut(s) 836
NheI GCTAGC 1 cut(s) 733
NlaIII CATG 8 cut(s) 187, 201, 538, 748, 860, 1160, 1346, 1478
NlaIV GGNNCC 2 cut(s) 305, 1298
NmuCI GTSAC 3 cut(s) 325, 1015, 1503
NspI RCATGY 1 cut(s) 538
PceI AGGCCT 1 cut(s) 481
PctI GAATGC 1 cut(s) 1553
PfeI GAWTC 2 cut(s) 872, 1304
PkrI GCNGC 4 cut(s) 1196, 1218, 1407, 1494
PleI GAGTC 5 cut(s) 607, 978, 1093, 1397, 1417
PpsI GAGTC 5 cut(s) 607, 978, 1093, 1397, 1417
Psp124BI GAGCTC 1 cut(s) 355
Psp6I CCWGG 3 cut(s) 283, 427, 623
PspFI CCCAGC 3 cut(s) 63, 729, 1071
PspGI CCWGG 3 cut(s) 283, 427, 623
PspN4I GGNNCC 2 cut(s) 305, 1298
PspPI GGNCC 4 cut(s) 425, 470, 1297, 1534
PsuI RGATCY 1 cut(s) 836
RsaI GTAC 2 cut(s) 495, 542
RsaNI GTAC 2 cut(s) 494, 541
RseI CAYNNNNRTG 1 cut(s) 212
SacI GAGCTC 1 cut(s) 355
SaqAI TTAA 3 cut(s) 1127, 1263, 1518
SatI GCNGC 4 cut(s) 1195, 1217, 1406, 1493
Sau3AI GATC 1 cut(s) 836
Sau96I GGNCC 4 cut(s) 425, 470, 1297, 1534
SchI GAGTC 5 cut(s) 608, 979, 1094, 1398, 1417
ScrFI CCNGG 4 cut(s) 277, 285, 429, 625
SduI GDGCHC 2 cut(s) 81, 355
SfaNI GCATC 3 cut(s) 599, 1254, 1478
SinI GGWCC 2 cut(s) 470, 1297
SmiMI CAYNNNNRTG 1 cut(s) 212
SmlI CTYRAG 2 cut(s) 141, 1425
SmoI CTYRAG 2 cut(s) 141, 1425
SpeI ACTAGT 1 cut(s) 989
SseBI AGGCCT 1 cut(s) 481
SsiI CCGC 3 cut(s) 588, 1501, 1541
SspI AATATT 1 cut(s) 929
SspMI CTAG 4 cut(s) 258, 483, 734, 990
SstI GAGCTC 1 cut(s) 355
StuI AGGCCT 1 cut(s) 481
StyD4I CCNGG 4 cut(s) 275, 283, 427, 623
StyI CCWWGG 2 cut(s) 197, 960
TaaI ACNGT 5 cut(s) 331, 614, 1117, 1292, 1378
TaqI TCGA 3 cut(s) 333, 1088, 1398
TatI WGTACW 1 cut(s) 540
TfiI GAWTC 2 cut(s) 872, 1304
Tru1I TTAA 3 cut(s) 1127, 1263, 1518
Tru9I TTAA 3 cut(s) 1127, 1263, 1518
TscAI CASTG 1 cut(s) 1297
TseFI GTSAC 3 cut(s) 325, 1015, 1503
TseI GCWGC 4 cut(s) 1194, 1216, 1405, 1492
Tsp45I GTSAC 3 cut(s) 325, 1015, 1503
TspDTI ATGAA 5 cut(s) 522, 1125, 1145, 1331, 1491
TspRI CASTG 1 cut(s) 1297
VpaK11BI GGWCC 2 cut(s) 470, 1297
XapI RAATTY 3 cut(s) 662, 995, 1272
XbaI TCTAGA 1 cut(s) 257
XceI RCATGY 1 cut(s) 538
XspI CTAG 4 cut(s) 258, 483, 734, 990
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.