Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001753.1

Orthogroup ID

OG0001027

Physical Location & Seq

Genomic Coordinates Reverse (-)

143934 .. 145479

Gene Structure 1546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001753.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

atggctctgaaacttggtcttgttcggtctcttctggtaattactttgtgcgtagcagcatcagtccctacgcaaactggagcaagatcatcatggacatcagattatgatgttgaggtacagaaagcagacagagtgatcggactgccgggtcagcctcctgtgaagttcgaccaatacgcaggctacgtaaccgtcaacgaaactcacggaagagccctcttctactggttctttgaagcagtcaaaagccctcacaaaaaaccactcgtcctttggctcaatggaggtccaggatgttcctcaattgggtatggagcagcagaggagataggccctttcttccctcaaaacagcgccaaacctaagctcaagtacaacccttacacctggaacaatgctgccaatttattgtttttggagtctcctgtgggtgtcggattttcttacaccaatactaccagtgatatcaaggaactaggggacaccattacaggtacgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009505 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0030312 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

167

Amino Acids

18.15

Weight (kDa)

7.73

Isoelectric Point (pI)

29.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28110 AT1G28110 AT2G33530
fragaria_vesca	FvH4_4g22840 FvH4_4g22840 FvH4_4g22840 FvH4_4g22840 FvH4_4g22840 FvH4_5g09210 FvH4_5g09210 FvH4_5g09210 FvH4_5g09210
malus_domestica	MD06G1132500.v1.1 MD08G1237600.v1.1 MD08G1237700.v1.1 MD08G1237800.v1.1 MD08G1238200.v1.1 MD08G1238400.v1.1 MD13G1129200.v1.1 MD14G1148900.v1.1 MD16G1129200.v1.1
prunus_persica	Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.5G143500_v2.0.a1 Prupe.7G030500_v2.0.a1 Prupe.7G030500_v2.0.a1
pyrus_communis	pycom06g12410 pycom08g20620 pycom08g20640 pycom08g20650 pycom08g20670 pycom13g11220 pycom14g12370 pycom16g10950
rosa_chinensis	RchiOBHm_Chr4g0429071 RchiOBHm_Chr7g0188951
rosa_laevigata	RLG00000004647 RLG00000007099
rosa_multiflora	Rmu_co8506825.1_g000001 Rmu_sc0001753.1_g000029 Rmu_sc0008629.1_g000021 Rmu_ssc0000113.1_g000005
rosa_roxburghii	Rroxscaffold_3G00265910 Rroxscaffold_5G00370710
rosa_rugosa	Rorug04G0232700 Rorug04G0232800 Rorug04G0232900 Rorug04G0232900 Rorug06G0495100
rosa_samantha	Rh4AG288500 Rh4BG294700 Rh4CG310200 Rh4DG291600 Rh7BG101900 Rh7CG103200
rosa_wichuraiana	Rw4G025010 Rw7G008600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	150
AfaI	GTAC	3 cut(s)	120, 377, 499
AfiI	CCNNNNNNNGG	1 cut(s)	309
AgsI	TTSAA	1 cut(s)	239
AjnI	CCWGG	2 cut(s)	292, 389
AluBI	AGCT	1 cut(s)	370
AluI	AGCT	1 cut(s)	370
Alw26I	GTCTC	2 cut(s)	33, 429
AoxI	GGCC	1 cut(s)	334
ApeKI	GCWGC	3 cut(s)	56, 320, 401
AspLEI	GCGC	1 cut(s)	359
AspS9I	GGNCC	2 cut(s)	290, 335
AsuC2I	CCSGG	1 cut(s)	150
AvaII	GGWCC	1 cut(s)	290
BanII	GRGCYC	1 cut(s)	220
BbvI	GCAGC	3 cut(s)	68, 332, 388
BciT130I	CCWGG	2 cut(s)	294, 391
BcnI	CCSGG	1 cut(s)	150
BcoDI	GTCTC	2 cut(s)	33, 429
BfaI	CTAG	1 cut(s)	479
BfoI	RGCGCY	1 cut(s)	360
BisI	GCNGC	3 cut(s)	57, 321, 402
BlsI	GCNGC	3 cut(s)	58, 322, 403
Bme1390I	CCNGG	3 cut(s)	150, 294, 391
Bme18I	GGWCC	1 cut(s)	290
BmgT120I	GGNCC	2 cut(s)	290, 335
BmrFI	CCNGG	3 cut(s)	150, 294, 391
BmsI	GCATC	1 cut(s)	68
BpmI	CTGGAG	1 cut(s)	99
Bpu10I	CCTNAGC	1 cut(s)	366
BpuEI	CTTGAG	1 cut(s)	356
BpuMI	CCSGG	1 cut(s)	150
BsaAI	YACGTR	2 cut(s)	190, 501
BsaI	GGTCTC	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	1 cut(s)	309
Bse1I	ACTGG	3 cut(s)	82, 233, 462
BseBI	CCWGG	2 cut(s)	294, 391
BseGI	GGATG	1 cut(s)	302
BseLI	CCNNNNNNNGG	1 cut(s)	309
BseNI	ACTGG	3 cut(s)	82, 233, 462
BseRI	GAGGAG	1 cut(s)	341
BseXI	GCAGC	3 cut(s)	68, 332, 388
BshFI	GGCC	1 cut(s)	336
BsiSI	CCGG	1 cut(s)	149
BslFI	GGGAC	2 cut(s)	50, 497
BslI	CCNNNNNNNGG	1 cut(s)	309
BsmAI	GTCTC	2 cut(s)	33, 429
BsmFI	GGGAC	2 cut(s)	50, 497
BsnI	GGCC	1 cut(s)	336
Bso31I	GGTCTC	1 cut(s)	33
Bsp1286I	GDGCHC	1 cut(s)	220
Bsp143I	GATC	2 cut(s)	86, 138
BspANI	GGCC	1 cut(s)	336
BspQI	GCTCTTC	1 cut(s)	208
BspTNI	GGTCTC	1 cut(s)	33
BsrI	ACTGG	3 cut(s)	82, 233, 462
BssMI	GATC	2 cut(s)	86, 138
Bst2UI	CCWGG	2 cut(s)	294, 391
Bst4CI	ACNGT	1 cut(s)	196
Bst6I	CTCTTC	3 cut(s)	36, 208, 227
BstBAI	YACGTR	2 cut(s)	190, 501
BstC8I	GCNNGC	1 cut(s)	184
BstDEI	CTNAG	1 cut(s)	366
BstF5I	GGATG	1 cut(s)	302
BstH2I	RGCGCY	1 cut(s)	360
BstHHI	GCGC	1 cut(s)	359
BstKTI	GATC	2 cut(s)	89, 141
BstMAI	GTCTC	2 cut(s)	33, 429
BstMBI	GATC	2 cut(s)	86, 138
BstMWI	GCNNNNNNNGC	1 cut(s)	154
BstNI	CCWGG	2 cut(s)	294, 391
BstSCI	CCNGG	3 cut(s)	148, 292, 389
BstSNI	TACGTA	2 cut(s)	190, 501
BstV1I	GCAGC	3 cut(s)	68, 332, 388
BsuRI	GGCC	1 cut(s)	336
BtsCI	GGATG	1 cut(s)	302
BtsIMutI	CAGTG	1 cut(s)	469
Cac8I	GCNNGC	1 cut(s)	184
CfoI	GCGC	1 cut(s)	359
Cfr13I	GGNCC	2 cut(s)	290, 335
Csp6I	GTAC	3 cut(s)	119, 376, 498
CviAII	CATG	1 cut(s)	93
CviJI	RGCY	8 cut(s)	5, 157, 186, 218, 252, 280, 336, 370
CviKI_1	RGCY	8 cut(s)	5, 157, 186, 218, 252, 280, 336, 370
CviQI	GTAC	3 cut(s)	119, 376, 498
DdeI	CTNAG	1 cut(s)	366
DpnI	GATC	2 cut(s)	88, 140
DpnII	GATC	2 cut(s)	86, 138
DrdI	GACNNNNNNGTC	1 cut(s)	150
DseDI	GACNNNNNNGTC	1 cut(s)	150
Eam1104I	CTCTTC	3 cut(s)	36, 208, 227
EarI	CTCTTC	3 cut(s)	36, 208, 227
Eco105I	TACGTA	2 cut(s)	190, 501
Eco24I	GRGCYC	1 cut(s)	220
Eco31I	GGTCTC	1 cut(s)	33
Eco32I	GATATC	1 cut(s)	469
Eco47I	GGWCC	1 cut(s)	290
EcoO109I	RGGNCCY	1 cut(s)	335
EcoRII	CCWGG	2 cut(s)	292, 389
EcoRV	GATATC	1 cut(s)	469
EcoT38I	GRGCYC	1 cut(s)	220
FaeI	CATG	1 cut(s)	96
FaiI	YATR	3 cut(s)	94, 108, 315
FaqI	GGGAC	2 cut(s)	50, 497
FatI	CATG	1 cut(s)	92
Fnu4HI	GCNGC	3 cut(s)	57, 321, 402
FokI	GGATG	1 cut(s)	309
FriOI	GRGCYC	1 cut(s)	220
Fsp4HI	GCNGC	3 cut(s)	57, 321, 402
FspBI	CTAG	1 cut(s)	479
GlaI	GCGC	1 cut(s)	358
GluI	GCNGC	3 cut(s)	57, 321, 402
GsuI	CTGGAG	1 cut(s)	99
HaeII	RGCGCY	1 cut(s)	360
HaeIII	GGCC	1 cut(s)	336
HapII	CCGG	1 cut(s)	149
HhaI	GCGC	1 cut(s)	359
Hin1II	CATG	1 cut(s)	96
Hin6I	GCGC	1 cut(s)	357
HinP1I	GCGC	1 cut(s)	357
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	1 cut(s)	422
HpaII	CCGG	1 cut(s)	149
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	4 cut(s)	9, 103, 143, 440
Hpy8I	GTNNAC	1 cut(s)	199
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4IV	ACGT	2 cut(s)	189, 500
HpyF10VI	GCNNNNNNNGC	1 cut(s)	154
HpyF3I	CTNAG	1 cut(s)	366
HpySE526I	ACGT	2 cut(s)	189, 500
Hsp92II	CATG	1 cut(s)	96
HspAI	GCGC	1 cut(s)	357
Kzo9I	GATC	2 cut(s)	86, 138
LguI	GCTCTTC	1 cut(s)	208
LmnI	GCTCC	2 cut(s)	80, 317
Lsp1109I	GCAGC	3 cut(s)	68, 332, 388
LweI	GCATC	1 cut(s)	68
MaeI	CTAG	1 cut(s)	479
MaeII	ACGT	2 cut(s)	189, 500
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	2 cut(s)	88, 140
MboI	GATC	2 cut(s)	86, 138
MboII	GAAGA	4 cut(s)	23, 214, 225, 334
MfeI	CAATTG	1 cut(s)	306
MhlI	GDGCHC	1 cut(s)	220
MluCI	AATT	3 cut(s)	39, 306, 406
MlyI	GAGTC	1 cut(s)	431
MmeI	TCCRAC	1 cut(s)	418
MnlI	CCTC	8 cut(s)	109, 168, 230, 264, 281, 313, 319, 357
MspI	CCGG	1 cut(s)	149
MspR9I	CCNGG	3 cut(s)	150, 294, 391
MunI	CAATTG	1 cut(s)	306
MvaI	CCWGG	2 cut(s)	294, 391
MwoI	GCNNNNNNNGC	1 cut(s)	154
NciI	CCSGG	1 cut(s)	150
NdeII	GATC	2 cut(s)	86, 138
NlaIII	CATG	1 cut(s)	96
PciSI	GCTCTTC	1 cut(s)	208
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PfoI	TCCNGGA	1 cut(s)	292
PkrI	GCNGC	3 cut(s)	58, 322, 403
PleI	GAGTC	1 cut(s)	430
PpsI	GAGTC	1 cut(s)	430
Ppu21I	YACGTR	2 cut(s)	190, 501
Psp6I	CCWGG	2 cut(s)	292, 389
PspGI	CCWGG	2 cut(s)	292, 389
PspPI	GGNCC	2 cut(s)	290, 335
RsaI	GTAC	3 cut(s)	120, 377, 499
RsaNI	GTAC	3 cut(s)	119, 376, 498
SapI	GCTCTTC	1 cut(s)	208
SatI	GCNGC	3 cut(s)	57, 321, 402
Sau3AI	GATC	2 cut(s)	86, 138
Sau96I	GGNCC	2 cut(s)	290, 335
SchI	GAGTC	1 cut(s)	431
ScrFI	CCNGG	3 cut(s)	150, 294, 391
SduI	GDGCHC	1 cut(s)	220
SetI	ASST	8 cut(s)	120, 192, 292, 367, 372, 392, 499, 503
SfaNI	GCATC	1 cut(s)	68
SinI	GGWCC	1 cut(s)	290
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
SnaBI	TACGTA	2 cut(s)	190, 501
Sse9I	AATT	3 cut(s)	39, 306, 406
SspMI	CTAG	1 cut(s)	479
StyD4I	CCNGG	3 cut(s)	148, 292, 389
TaaI	ACNGT	1 cut(s)	196
TaiI	ACGT	2 cut(s)	192, 503
TaqI	TCGA	1 cut(s)	171
TaqII	GACCGA	1 cut(s)	15
TasI	AATT	3 cut(s)	39, 306, 406
TatI	WGTACW	1 cut(s)	375
TscAI	CASTG	1 cut(s)	469
TseI	GCWGC	3 cut(s)	56, 320, 401
TspGWI	ACGGA	1 cut(s)	225
TspRI	CASTG	1 cut(s)	469
VpaK11BI	GGWCC	1 cut(s)	290
XcmI	CCANNNNNNNNNTGG	1 cut(s)	273
XspI	CTAG	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.