Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001027

Physical Location & Seq

Genomic Coordinates Reverse (-)

46604918 .. 46607916

Gene Structure 2999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG294700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGCTCTATTTGGAGACACCAATTGGAGTTGGGTTCTCTTATTCAACTGATACCGCTTCTTATGAGTCTGTAAATGACCGTATTACAGCCAGGGACAATCTGATGTTCTTACAAAAGTGGCTGGACAAATTCCCTCAATATAGAAACAGAAGCTTGTTTATTACAGGAGAAAGCTATGCTGGTCATTATGTTCCCCAGCTAGCAGAACTCATGCTCCAATTCAACAAGGAGTATCACTTCAATTTAAAAGGAATTGCTTTGGGTAATCCAGTCCTAGAATATGCTACTGACTTCAATTCAAGATCCGAGTTCTTTTGGTCTCATGGATTGATATCAGATTCAACGTACAAAATGTTCACTTCAGTCTGTAACTATTCAAGATATGTGAGTGAATATTATAGAGGCTCGGTTTCACCTATTTGTTCCAAGGTGATGAGTCAAGTCAGCAGAGAAACCAGTAAATTTGTTGACAAATATGATGTCACTCTTGATGTTTGTATATCATCTGTGTTCTCCCAATCCAAAGTCCTCAGTCCCCAGCAAGTTACTGAGTCAATAGATGTATGCGTGGAAGATGAAACAGTCAACTATTTAAACAGGCTGGATGTGCAGAAGGCACTTCATGCTCGCCTTGTTGGTGTTCGGAAATGGGCAGTTTGCAGCAATGTATTGGATTATGAGCTGCTGGATTTGGAGATACCAACAATCACAATTGTAGGCAAACTCATTAAGGCAGGAATATCAGTCTTGGTTTACAGTGGCGACCAAGATTCTGTTATTCCATTGACCGGTAGTCGAACATTAGTTCATGGACTTGCAGAGGAACTAAAACTAAATACCACCGTTCCTTATAGAGTCTGGTTTGAGGGGCAGCAGGTTGGTGGGTGGACTCAAGTTTATGGTAATATGCTTTCCTTCGCCACCATTAGAGGAGCATCGCATGAAGCACCATTCTCGCAGCCTGAGAGGTCACTTGTACTGTTTAAATCATTTCTGGAGGGCCGACCGCTACCAGAAGCATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009505 GO:0009506 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030054 GO:0030163 GO:0030312 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0051603 GO:0055044 GO:0070008 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

341

Amino Acids

38.63

Weight (kDa)

5.6

Isoelectric Point (pI)

33.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	1 - 334	4.2e-85	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28110 AT1G28110 AT2G33530
fragaria_vesca	FvH4_4g22840 FvH4_4g22840 FvH4_4g22840 FvH4_4g22840 FvH4_4g22840 FvH4_5g09210 FvH4_5g09210 FvH4_5g09210 FvH4_5g09210
malus_domestica	MD06G1132500.v1.1 MD08G1237600.v1.1 MD08G1237700.v1.1 MD08G1237800.v1.1 MD08G1238200.v1.1 MD08G1238400.v1.1 MD13G1129200.v1.1 MD14G1148900.v1.1 MD16G1129200.v1.1
prunus_persica	Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.5G143500_v2.0.a1 Prupe.7G030500_v2.0.a1 Prupe.7G030500_v2.0.a1
pyrus_communis	pycom06g12410 pycom08g20620 pycom08g20640 pycom08g20650 pycom08g20670 pycom13g11220 pycom14g12370 pycom16g10950
rosa_chinensis	RchiOBHm_Chr4g0429071 RchiOBHm_Chr7g0188951
rosa_laevigata	RLG00000004647 RLG00000007099
rosa_multiflora	Rmu_co8506825.1_g000001 Rmu_sc0001753.1_g000029 Rmu_sc0008629.1_g000021 Rmu_ssc0000113.1_g000005
rosa_roxburghii	Rroxscaffold_3G00265910 Rroxscaffold_5G00370710
rosa_rugosa	Rorug04G0232700 Rorug04G0232800 Rorug04G0232900 Rorug04G0232900 Rorug06G0495100
rosa_samantha	Rh4AG288500 Rh4BG294700 Rh4CG310200 Rh4DG291600 Rh7BG101900 Rh7CG103200
rosa_wichuraiana	Rw4G025010 Rw7G008600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	865
AciI	CCGC	2 cut(s)	54, 1007
AclWI	GGATC	1 cut(s)	297
AcsI	RAATTY	2 cut(s)	128, 461
AcuI	CTGAAG	1 cut(s)	345
AfaI	GTAC	2 cut(s)	347, 978
AfiI	CCNNNNNNNGG	1 cut(s)	788
AgeI	ACCGGT	1 cut(s)	788
AgsI	TTSAA	7 cut(s)	45, 223, 241, 295, 300, 342, 378
AhdI	GACNNNNNGTC	1 cut(s)	792
AjnI	CCWGG	1 cut(s)	89
AloI	GAACNNNNNNTCC	2 cut(s)	198, 230
AluBI	AGCT	4 cut(s)	153, 174, 199, 682
AluI	AGCT	4 cut(s)	153, 174, 199, 682
Alw26I	GTCTC	2 cut(s)	8, 324
AlwI	GGATC	1 cut(s)	297
AoxI	GGCC	1 cut(s)	1000
ApeKI	GCWGC	4 cut(s)	660, 682, 871, 958
ApoI	RAATTY	2 cut(s)	128, 461
ArsI	GACNNNNNNTTYG	2 cut(s)	465, 497
AsiGI	ACCGGT	1 cut(s)	788
AspS9I	GGNCC	1 cut(s)	1000
AsuHPI	GGTGA	2 cut(s)	405, 442
AsuNHI	GCTAGC	1 cut(s)	199
BbvI	GCAGC	4 cut(s)	669, 672, 883, 970
BcgI	CGANNNNNNTGC	2 cut(s)	936, 970
BciT130I	CCWGG	1 cut(s)	91
BcoDI	GTCTC	2 cut(s)	8, 324
BfaI	CTAG	2 cut(s)	200, 275
BfuAI	ACCTGC	1 cut(s)	865
BisI	GCNGC	4 cut(s)	661, 683, 872, 959
BlsI	GCNGC	4 cut(s)	662, 684, 873, 960
Bme1390I	CCNGG	1 cut(s)	91
BmeRI	GACNNNNNGTC	1 cut(s)	792
BmgT120I	GGNCC	1 cut(s)	1000
BmrFI	CCNGG	1 cut(s)	91
BmsI	GCATC	1 cut(s)	944
BmtI	GCTAGC	1 cut(s)	203
BpmI	CTGGAG	1 cut(s)	1016
BpuEI	CTTGAG	1 cut(s)	876
BsaBI	GATNNNNATC	1 cut(s)	331
BsaI	GGTCTC	1 cut(s)	324
BsaJI	CCNNGG	2 cut(s)	90, 426
BsaWI	WCCGGW	1 cut(s)	788
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
Bsc4I	CCNNNNNNNGG	1 cut(s)	788
Bse118I	RCCGGY	1 cut(s)	788
Bse1I	ACTGG	2 cut(s)	269, 456
Bse3DI	GCAATG	1 cut(s)	670
Bse8I	GATNNNNATC	1 cut(s)	331
BseBI	CCWGG	1 cut(s)	91
BseDI	CCNNGG	2 cut(s)	90, 426
BseGI	GGATG	1 cut(s)	610
BseJI	GATNNNNATC	1 cut(s)	331
BseLI	CCNNNNNNNGG	1 cut(s)	788
BseMI	GCAATG	1 cut(s)	670
BseMII	CTCAG	3 cut(s)	540, 544, 954
BseNI	ACTGG	2 cut(s)	269, 456
BseRI	GAGGAG	1 cut(s)	945
BseXI	GCAGC	4 cut(s)	669, 672, 883, 970
BseYI	CCCAGC	2 cut(s)	195, 537
BsgI	GTGCAG	1 cut(s)	629
Bsh1285I	CGRYCG	1 cut(s)	1007
BshFI	GGCC	1 cut(s)	1002
BshTI	ACCGGT	1 cut(s)	788
BsiEI	CGRYCG	1 cut(s)	1007
BsiSI	CCGG	1 cut(s)	789
BslFI	GGGAC	2 cut(s)	107, 519
BslI	CCNNNNNNNGG	1 cut(s)	788
BsmAI	GTCTC	2 cut(s)	8, 324
BsmFI	GGGAC	2 cut(s)	107, 519
BsmI	GAATGC	1 cut(s)	1019
BsnI	GGCC	1 cut(s)	1002
Bso31I	GGTCTC	1 cut(s)	324
Bsp143I	GATC	1 cut(s)	302
BspACI	CCGC	2 cut(s)	54, 1007
BspANI	GGCC	1 cut(s)	1002
BspCNI	CTCAG	3 cut(s)	541, 543, 955
BspMI	ACCTGC	1 cut(s)	865
BspOI	GCTAGC	1 cut(s)	203
BspPI	GGATC	1 cut(s)	297
BspTNI	GGTCTC	1 cut(s)	324
BsrDI	GCAATG	1 cut(s)	670
BsrFI	RCCGGY	1 cut(s)	788
BsrI	ACTGG	2 cut(s)	269, 456
BssAI	RCCGGY	1 cut(s)	788
BssECI	CCNNGG	2 cut(s)	90, 426
BssMI	GATC	1 cut(s)	302
BssT1I	CCWWGG	1 cut(s)	426
Bst2UI	CCWGG	1 cut(s)	91
Bst4CI	ACNGT	5 cut(s)	80, 583, 758, 844, 981
BstAPI	GCANNNNNTGC	1 cut(s)	623
BstC8I	GCNNGC	2 cut(s)	201, 628
BstDEI	CTNAG	3 cut(s)	530, 549, 963
BstF5I	GGATG	1 cut(s)	610
BstKTI	GATC	1 cut(s)	305
BstMAI	GTCTC	2 cut(s)	8, 324
BstMBI	GATC	1 cut(s)	302
BstMCI	CGRYCG	1 cut(s)	1007
BstMWI	GCNNNNNNNGC	2 cut(s)	607, 623
BstNI	CCWGG	1 cut(s)	91
BstSCI	CCNGG	1 cut(s)	89
BstV1I	GCAGC	4 cut(s)	669, 672, 883, 970
BstX2I	RGATCY	1 cut(s)	302
BstYI	RGATCY	1 cut(s)	302
BsuRI	GGCC	1 cut(s)	1002
BtgZI	GCGATG	1 cut(s)	921
BtsCI	GGATG	1 cut(s)	610
BtsIMutI	CAGTG	1 cut(s)	763
BveI	ACCTGC	1 cut(s)	865
Cac8I	GCNNGC	2 cut(s)	201, 628
Cfr10I	RCCGGY	1 cut(s)	788
Cfr13I	GGNCC	1 cut(s)	1000
Csp6I	GTAC	2 cut(s)	346, 977
CspAI	ACCGGT	1 cut(s)	788
CviAII	CATG	5 cut(s)	211, 323, 623, 809, 941
CviQI	GTAC	2 cut(s)	346, 977
DdeI	CTNAG	3 cut(s)	530, 549, 963
DpnI	GATC	1 cut(s)	304
DpnII	GATC	1 cut(s)	302
DraI	TTTAAA	3 cut(s)	246, 594, 985
DriI	GACNNNNNGTC	1 cut(s)	792
Eam1105I	GACNNNNNGTC	1 cut(s)	792
Eco130I	CCWWGG	1 cut(s)	426
Eco31I	GGTCTC	1 cut(s)	324
Eco32I	GATATC	1 cut(s)	333
Eco57I	CTGAAG	1 cut(s)	345
EcoRII	CCWGG	1 cut(s)	89
EcoRV	GATATC	1 cut(s)	333
EcoT14I	CCWWGG	1 cut(s)	426
ErhI	CCWWGG	1 cut(s)	426
FaeI	CATG	5 cut(s)	214, 326, 626, 812, 944
FaqI	GGGAC	2 cut(s)	107, 519
FatI	CATG	5 cut(s)	210, 322, 622, 808, 940
Fnu4HI	GCNGC	4 cut(s)	661, 683, 872, 959
FokI	GGATG	1 cut(s)	617
Fsp4HI	GCNGC	4 cut(s)	661, 683, 872, 959
FspBI	CTAG	2 cut(s)	200, 275
GluI	GCNGC	4 cut(s)	661, 683, 872, 959
GsaI	CCCAGC	2 cut(s)	199, 541
GsuI	CTGGAG	1 cut(s)	1016
HaeIII	GGCC	1 cut(s)	1002
HapII	CCGG	1 cut(s)	789
Hin1II	CATG	5 cut(s)	214, 326, 626, 812, 944
HincII	GTYRAC	2 cut(s)	469, 586
HindII	GTYRAC	2 cut(s)	469, 586
HindIII	AAGCTT	1 cut(s)	151
HinfI	GANTC	7 cut(s)	65, 338, 436, 551, 770, 855, 889
HpaII	CCGG	1 cut(s)	789
HphI	GGTGA	2 cut(s)	405, 442
Hpy166II	GTNNAC	5 cut(s)	357, 469, 586, 754, 888
Hpy188I	TCNGA	5 cut(s)	102, 307, 337, 645, 1025
Hpy188III	TCNNGA	4 cut(s)	300, 378, 488, 995
Hpy8I	GTNNAC	5 cut(s)	357, 469, 586, 754, 888
HpyAV	CCTTC	2 cut(s)	607, 925
HpyCH4III	ACNGT	5 cut(s)	80, 583, 758, 844, 981
HpyCH4IV	ACGT	1 cut(s)	344
HpyCH4V	TGCA	3 cut(s)	610, 660, 818
HpyF10VI	GCNNNNNNNGC	2 cut(s)	607, 623
HpyF3I	CTNAG	3 cut(s)	530, 549, 963
HpySE526I	ACGT	1 cut(s)	344
Hsp92II	CATG	5 cut(s)	214, 326, 626, 812, 944
Kzo9I	GATC	1 cut(s)	302
LmnI	GCTCC	2 cut(s)	219, 932
Lsp1109I	GCAGC	4 cut(s)	669, 672, 883, 970
LweI	GCATC	1 cut(s)	944
MaeI	CTAG	2 cut(s)	200, 275
MaeII	ACGT	1 cut(s)	344
MaeIII	GTNAC	4 cut(s)	368, 481, 544, 969
MalI	GATC	1 cut(s)	304
MboI	GATC	1 cut(s)	302
MboII	GAAGA	1 cut(s)	584
MfeI	CAATTG	2 cut(s)	21, 711
MflI	RGATCY	1 cut(s)	302
MluCI	AATT	8 cut(s)	21, 128, 218, 241, 252, 295, 461, 711
MlyI	GAGTC	5 cut(s)	74, 445, 560, 864, 883
MnlI	CCTC	8 cut(s)	144, 395, 539, 814, 859, 923, 960, 991
MseI	TTAA	4 cut(s)	245, 593, 729, 984
MspI	CCGG	1 cut(s)	789
MspR9I	CCNGG	1 cut(s)	91
MunI	CAATTG	2 cut(s)	21, 711
Mva1269I	GAATGC	1 cut(s)	1019
MvaI	CCWGG	1 cut(s)	91
MwoI	GCNNNNNNNGC	2 cut(s)	607, 623
NdeII	GATC	1 cut(s)	302
NheI	GCTAGC	1 cut(s)	199
NlaIII	CATG	5 cut(s)	214, 326, 626, 812, 944
NmuCI	GTSAC	2 cut(s)	481, 969
PctI	GAATGC	1 cut(s)	1019
PfeI	GAWTC	2 cut(s)	338, 770
PinAI	ACCGGT	1 cut(s)	788
PkrI	GCNGC	4 cut(s)	662, 684, 873, 960
PleI	GAGTC	5 cut(s)	73, 444, 559, 863, 883
PpsI	GAGTC	5 cut(s)	73, 444, 559, 863, 883
Psp6I	CCWGG	1 cut(s)	89
PspFI	CCCAGC	2 cut(s)	195, 537
PspGI	CCWGG	1 cut(s)	89
PspPI	GGNCC	1 cut(s)	1000
PsrI	GAACNNNNNNTAC	2 cut(s)	338, 370
PsuI	RGATCY	1 cut(s)	302
RsaI	GTAC	2 cut(s)	347, 978
RsaNI	GTAC	2 cut(s)	346, 977
SaqAI	TTAA	4 cut(s)	245, 593, 729, 984
SatI	GCNGC	4 cut(s)	661, 683, 872, 959
Sau3AI	GATC	1 cut(s)	302
Sau96I	GGNCC	1 cut(s)	1000
SchI	GAGTC	5 cut(s)	74, 445, 560, 864, 883
ScrFI	CCNGG	1 cut(s)	91
SetI	ASST	9 cut(s)	155, 176, 201, 347, 418, 432, 684, 879, 971
SfaNI	GCATC	1 cut(s)	944
SmlI	CTYRAG	1 cut(s)	891
SmoI	CTYRAG	1 cut(s)	891
Sse9I	AATT	8 cut(s)	21, 128, 218, 241, 252, 295, 461, 711
SsiI	CCGC	2 cut(s)	54, 1007
SspI	AATATT	1 cut(s)	395
SspMI	CTAG	2 cut(s)	200, 275
StyD4I	CCNGG	1 cut(s)	89
StyI	CCWWGG	1 cut(s)	426
TaaI	ACNGT	5 cut(s)	80, 583, 758, 844, 981
TaiI	ACGT	1 cut(s)	347
TaqI	TCGA	1 cut(s)	796
TasI	AATT	8 cut(s)	21, 128, 218, 241, 252, 295, 461, 711
TatI	WGTACW	1 cut(s)	976
TfiI	GAWTC	2 cut(s)	338, 770
Tru1I	TTAA	4 cut(s)	245, 593, 729, 984
Tru9I	TTAA	4 cut(s)	245, 593, 729, 984
TscAI	CASTG	1 cut(s)	763
TseFI	GTSAC	2 cut(s)	481, 969
TseI	GCWGC	4 cut(s)	660, 682, 871, 958
Tsp45I	GTSAC	2 cut(s)	481, 969
TspDTI	ATGAA	4 cut(s)	591, 611, 797, 957
TspRI	CASTG	1 cut(s)	763
XapI	RAATTY	2 cut(s)	128, 461
XspI	CTAG	2 cut(s)	200, 275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.