Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001027

Physical Location & Seq

Genomic Coordinates Forward (+)

39785385 .. 39787976

Gene Structure 2592 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0232700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2592 bp

ATGGATTTGTCTGCGGAGGATTTGGCAGTGAAGCAAAAATTGGAGCTATATGTGGAGAGGGTTCAAGATCCTGATCCTCGGCTGCAGATGGTTGCTCTCGAGAGTATGAGGCACGAAATTCGTTCTTCAACCAGTTCAATGACGGCTGTTCCAAAGCCCTTGAAATATCTTCGCCCACATTACACAACTCTAAAATCATATTACGAAATAATGGGAGCTTCAGATTTGAAGATAAACCTGGCAGATATACTATCTGTTTTGGCACTGACCATGTCTGCTGAGGGAGAGCGGGAAAGCTTGAAGTACAGAATGTTGGCTGGTTCAAACGGTGACATTGGTTCATGGGGTCATGAATATGTCAGGAACTTAGCTGCAGAAATTGCTGAAGAATATGCCGATAATAAGCTGCAGTTTCAGATCAGTGATGAAAACCCTAATTGTGACCTAATGAAACTGGTACGACAGATTGTTGCTTTTCACATGTGGCACAATGCCGAAACTGAAGCGGTTGACCTGTTGGTTGAGATTGGAGATCACCTTAATCTGTTATTTGAGCATGTTGATAAGACGAATTTTAAGAAGACTTGCCTTTATCTGACCAGTTCAGCAAGATACCTTCCTGCCAGACCAGACGATGCGTACTTAGCTTTGGATATTGCATACAAGATATATCTGAAGTTTGGAGAATATCCAAATGCACTTCAGATTGCGCTTTTCGTTGATGACCACCAGTTGATAAGGGAAGTGTTTACATCTTGTGATGATGTGCTTTGTAAAAAACAACTTTGCTACATGCTTGCTAGGCATGGTGGTAATTATTCAGTGCTTGATGATGATGATGATAACATGGATGGGGATAGTAATAACCGAGAGGTAATGCAGGACATTATTAATAACACTAAGCTCAGCGAAGGTTATCTTACCCTTGCTCGAGATCTTGAGGTCATGGAGGCCAAAACTCCACAGGATATATACAAGGCACACTTGCTTCATGGTCAAGTAAGTAGTAGTGTTGATTCAGCGCGACAGAACTTGGCCGACACATTTGTTAATGCATTCGTAAATGTGGGCTTTGGTCAGGATAAGTTGATGACGACAGTTGAACCACCAAAAGATCATTGGCTTTTCAAGAATAAGGAGCATGGAAAGATCAGCGCTGCTGCAAGTCTAGGTATGATTTCACTGTGGGATGTTGACTCTGGATTTGCCCACATTGACAAGTACCTGCACAGCAATGACAACCATGTTATTGCTGGTGCCTTGTTGGGGATTGGAATTTTCAATTGCGGTGTCAAACATGATTGTGATCCGGCGCTGGCAATTTTGGGGGAATATGTAGATAGAGAAGATCCATCTATCCGCATTGGTGCAATAATGGGACTAGGGATTGCATATGCTGGTTCAAAGAATGAGCAGATAGGTAGTCAGCTGACTCCGATACTTAATGACGCAAAAGCTCCACTTGATGTGGTCACATTCACTGCAATCTCATTGGGGTTGATATTCATTGGTTCCTGCAATGAAGAGGTAGCTCAAGCTATCATACTTGCACTAATGGACCGAACTGACGCAGAGTTGGGAGACCCCCTTGCTCGCCTAATTTCGGTTAGCCTTGGCCTTGTGTACCTTGGGAAGCAAGACAACGTTGAAGCCACTGCTCAAGTTTCACAGACATTTAATGAAAAAATCAGAAGACATTGTGATATGACTCTGCTTTCTTGTGCTTATGCTGGAACAGGAGATGTTCTCAAGGTTCAAACCCTTCTCGGCCATTGCTCGCAACATGTTGAGGAGAAGGGTGAAACTCACCAGGGACCTGCTGTGCTTGGAATTTCTATGATAGCAATGGCTGAAGAATTGGGACTTGAAATGGCAATTCGTTCATTAGAGCATCTTCTACAGTATGGACAACAAAGCATCCGGAAGGCAGCTCCTTTGGCCCTTGGTCTCCTTTGCATATCAAACCCAAAGGTCAATGTTATGGACACATTAAGCAGACTTAGCCATGATACAGATTCAGAAGTAGCAATGGCTGCAGTGGTTTCCTTAGGTTTGATAGGTGCAGGAACCAATAATGCCAGAATAGCTTGCATGCTTCGCAGTCTTTCAAGTTATTACTACAAAGATGCCAACCTTCTCTTCTGCGTGCGCATTGCTCAAGGTCTTGTACATTTAGGAAAGGGTTTATCAACTCTAAATCCATATCATTCCGACCGCTTCTTGCAATCACCAGCAGCACTTGGTGGAATCATAGTCATGCTGCACGCATGTCTTGATATGAAAGCCATCATTTTGGGGAAGTATCATTATGTTCTCTACTATCTTGTCATGGCTGTGCAGCCAAGAATGTTGTTGACCGTGGACGAGAATCTCAAACCCTTGTCTGTCCCTGTTCGAGTGGGAAAAGCTGTGGATGTTGTTGGGCAGGCTGGCCATCCAAAAACAATAACCGGTTTCCAAACCCACTCAACACCGGTTGTTCTGGCAGCTGGTGAGAAAGCAGAGTTGGTGACTGAGAAATATATTCCCCTTTCTCCCTTCCTTGAAGGTTTTGTCATTTTGAAAGAAAATCTGGACTACAAGGAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009505 GO:0009506 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030054 GO:0030163 GO:0030312 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0051603 GO:0055044 GO:0070008 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

863

Amino Acids

95.14

Weight (kDa)

5.31

Isoelectric Point (pI)

32.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN1_RPN2_N	PF17781	14 - 329	5.1e-113	RPN1 N-terminal domain
RPN1_C	PF18051	807 - 860	8.8e-27	26S proteasome non-ATPase regulatory subunit RPN1 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28110 AT1G28110 AT2G33530
fragaria_vesca	FvH4_4g22840 FvH4_4g22840 FvH4_4g22840 FvH4_4g22840 FvH4_4g22840 FvH4_5g09210 FvH4_5g09210 FvH4_5g09210 FvH4_5g09210
malus_domestica	MD06G1132500.v1.1 MD08G1237600.v1.1 MD08G1237700.v1.1 MD08G1237800.v1.1 MD08G1238200.v1.1 MD08G1238400.v1.1 MD13G1129200.v1.1 MD14G1148900.v1.1 MD16G1129200.v1.1
prunus_persica	Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.5G143500_v2.0.a1 Prupe.7G030500_v2.0.a1 Prupe.7G030500_v2.0.a1
pyrus_communis	pycom06g12410 pycom08g20620 pycom08g20640 pycom08g20650 pycom08g20670 pycom13g11220 pycom14g12370 pycom16g10950
rosa_chinensis	RchiOBHm_Chr4g0429071 RchiOBHm_Chr7g0188951
rosa_laevigata	RLG00000004647 RLG00000007099
rosa_multiflora	Rmu_co8506825.1_g000001 Rmu_sc0001753.1_g000029 Rmu_sc0008629.1_g000021 Rmu_ssc0000113.1_g000005
rosa_roxburghii	Rroxscaffold_3G00265910 Rroxscaffold_5G00370710
rosa_rugosa	Rorug04G0232700 Rorug04G0232800 Rorug04G0232900 Rorug04G0232900 Rorug06G0495100
rosa_samantha	Rh4AG288500 Rh4BG294700 Rh4CG310200 Rh4DG291600 Rh7BG101900 Rh7CG103200
rosa_wichuraiana	Rw4G025010 Rw7G008600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	2150
Acc36I	ACCTGC	2 cut(s)	1233, 1825
AccB1I	GGYRCC	1 cut(s)	1256
AccBSI	CCGCTC	1 cut(s)	289
AccII	CGCG	1 cut(s)	1024
AccIII	TCCGGA	1 cut(s)	1920
AciI	CCGC	6 cut(s)	14, 289, 506, 1287, 1360, 2215
AclI	AACGTT	1 cut(s)	1644
AclWI	GGATC	4 cut(s)	62, 68, 1301, 1343
AcoI	YGGCCR	3 cut(s)	1035, 1768, 2431
AcsI	RAATTY	4 cut(s)	117, 571, 1275, 1830
AcuI	CTGAAG	6 cut(s)	204, 405, 522, 686, 695, 1872
AdeI	CACNNNGTG	1 cut(s)	2243
AfaI	GTAC	6 cut(s)	305, 459, 641, 1223, 1625, 2169
AfeI	AGCGCT	1 cut(s)	1156
AfiI	CCNNNNNNNGG	2 cut(s)	1266, 1603
AflIII	ACRYGT	2 cut(s)	480, 1783
AgeI	ACCGGT	2 cut(s)	2450, 2473
AjnI	CCWGG	2 cut(s)	237, 1809
AjuI	GAANNNNNNNTTGG	6 cut(s)	23, 55, 2123, 2155, 2489, 2521
Alw26I	GTCTC	2 cut(s)	1575, 1952
AlwI	GGATC	4 cut(s)	62, 68, 1301, 1343
Ama87I	CYCGRG	2 cut(s)	98, 930
Aor13HI	TCCGGA	1 cut(s)	1920
Aor51HI	AGCGCT	1 cut(s)	1156
AoxI	GGCC	6 cut(s)	951, 1035, 1615, 1768, 1938, 2431
ApoI	RAATTY	4 cut(s)	117, 571, 1275, 1830
ArsI	GACNNNNNNTTYG	2 cut(s)	1187, 1219
AseI	ATTAAT	1 cut(s)	891
AsiGI	ACCGGT	2 cut(s)	2450, 2473
AspLEI	GCGC	5 cut(s)	712, 1024, 1157, 1315, 2151
AspS9I	GGNCC	3 cut(s)	1558, 1814, 1939
AsuHPI	GGTGA	7 cut(s)	341, 527, 1799, 1811, 2220, 2504, 2521
AvaI	CYCGRG	2 cut(s)	98, 930
AvaII	GGWCC	2 cut(s)	1558, 1814
AxyI	CCTNAGG	1 cut(s)	2047
BalI	TGGCCA	1 cut(s)	2433
BanI	GGYRCC	1 cut(s)	1256
BbsI	GAAGAC	2 cut(s)	587, 1699
BbvCI	CCTCAGC	1 cut(s)	279
BccI	CCATC	5 cut(s)	82, 845, 1360, 2294, 2442
BceAI	ACGGC	1 cut(s)	159
BcgI	CGANNNNNNTGC	2 cut(s)	101, 135
BciT130I	CCWGG	2 cut(s)	239, 1811
BcoDI	GTCTC	2 cut(s)	1575, 1952
BfaI	CTAG	4 cut(s)	801, 1169, 1382, 2590
BfmI	CTRYAG	5 cut(s)	83, 372, 407, 1898, 2034
BfoI	RGCGCY	2 cut(s)	1158, 1316
BfuAI	ACCTGC	2 cut(s)	1233, 1825
BglII	AGATCT	1 cut(s)	934
BlpI	GCTNAGC	1 cut(s)	905
Bme1390I	CCNGG	2 cut(s)	239, 1811
Bme18I	GGWCC	2 cut(s)	1558, 1814
BmeT110I	CYCGRG	2 cut(s)	98, 930
BmgT120I	GGNCC	3 cut(s)	1558, 1814, 1939
BmiI	GGNNCC	4 cut(s)	1258, 1513, 1815, 2068
BmrFI	CCNGG	2 cut(s)	239, 1811
BmsI	GCATC	4 cut(s)	625, 1900, 1926, 2116
BpiI	GAAGAC	2 cut(s)	587, 1699
BplI	GAGNNNNNCTC	2 cut(s)	1731, 1763
Bpu10I	CCTNAGC	1 cut(s)	279
Bpu1102I	GCTNAGC	1 cut(s)	905
BpuEI	CTTGAG	5 cut(s)	959, 1518, 1644, 1733, 2142
BsaBI	GATNNNNATC	2 cut(s)	72, 1305
BsaI	GGTCTC	2 cut(s)	1575, 1952
BsaJI	CCNNGG	6 cut(s)	77, 1612, 1627, 1810, 1942, 2358
BsaWI	WCCGGW	3 cut(s)	1920, 2450, 2473
Bsc4I	CCNNNNNNNGG	2 cut(s)	1266, 1603
Bse118I	RCCGGY	2 cut(s)	2450, 2473
Bse1I	ACTGG	4 cut(s)	132, 459, 600, 730
Bse21I	CCTNAGG	1 cut(s)	2047
Bse3DI	GCAATG	6 cut(s)	1240, 1525, 1771, 1851, 2034, 2151
Bse8I	GATNNNNATC	2 cut(s)	72, 1305
BseAI	TCCGGA	1 cut(s)	1920
BseBI	CCWGG	2 cut(s)	239, 1811
BseDI	CCNNGG	6 cut(s)	77, 1612, 1627, 1810, 1942, 2358
BseGI	GGATG	5 cut(s)	856, 1195, 1917, 2419, 2434
BseJI	GATNNNNATC	2 cut(s)	72, 1305
BseLI	CCNNNNNNNGG	2 cut(s)	1266, 1603
BseMI	GCAATG	6 cut(s)	1240, 1525, 1771, 1851, 2034, 2151
BseMII	CTCAG	3 cut(s)	270, 919, 2505
BseNI	ACTGG	4 cut(s)	132, 459, 600, 730
BseRI	GAGGAG	1 cut(s)	1805
BsgI	GTGCAG	4 cut(s)	1211, 2082, 2246, 2357
Bsh1236I	CGCG	1 cut(s)	1024
Bsh1285I	CGRYCG	1 cut(s)	2215
BshFI	GGCC	6 cut(s)	953, 1037, 1617, 1770, 1940, 2433
BshNI	GGYRCC	1 cut(s)	1256
BshTI	ACCGGT	2 cut(s)	2450, 2473
BsiEI	CGRYCG	1 cut(s)	2215
BsiHKCI	CYCGRG	2 cut(s)	98, 930
BsiSI	CCGG	4 cut(s)	1310, 1921, 2451, 2474
BslFI	GGGAC	4 cut(s)	1392, 1827, 1875, 2372
BslI	CCNNNNNNNGG	2 cut(s)	1266, 1603
BsmAI	GTCTC	2 cut(s)	1575, 1952
BsmFI	GGGAC	4 cut(s)	1392, 1827, 1875, 2372
BsmI	GAATGC	1 cut(s)	1055
BsnI	GGCC	6 cut(s)	953, 1037, 1617, 1770, 1940, 2433
Bso31I	GGTCTC	2 cut(s)	1575, 1952
BsoBI	CYCGRG	2 cut(s)	98, 930
Bsp13I	TCCGGA	1 cut(s)	1920
Bsp1407I	TGTACA	1 cut(s)	2167
Bsp143I	GATC	9 cut(s)	67, 73, 417, 532, 934, 1114, 1149, 1306, 1348
Bsp1720I	GCTNAGC	1 cut(s)	905
BspACI	CCGC	6 cut(s)	14, 289, 506, 1287, 1360, 2215
BspANI	GGCC	6 cut(s)	953, 1037, 1617, 1770, 1940, 2433
BspCNI	CTCAG	3 cut(s)	271, 918, 2506
BspEI	TCCGGA	1 cut(s)	1920
BspFNI	CGCG	1 cut(s)	1024
BspHI	TCATGA	1 cut(s)	349
BspLI	GGNNCC	4 cut(s)	1258, 1513, 1815, 2068
BspMAI	CTGCAG	4 cut(s)	87, 376, 411, 2038
BspMI	ACCTGC	2 cut(s)	1233, 1825
BspPI	GGATC	4 cut(s)	62, 68, 1301, 1343
BspT107I	GGYRCC	1 cut(s)	1256
BspTNI	GGTCTC	2 cut(s)	1575, 1952
BsrBI	CCGCTC	1 cut(s)	289
BsrDI	GCAATG	6 cut(s)	1240, 1525, 1771, 1851, 2034, 2151
BsrFI	RCCGGY	2 cut(s)	2450, 2473
BsrGI	TGTACA	1 cut(s)	2167
BsrI	ACTGG	4 cut(s)	132, 459, 600, 730
BssAI	RCCGGY	2 cut(s)	2450, 2473
BssECI	CCNNGG	6 cut(s)	77, 1612, 1627, 1810, 1942, 2358
BssMI	GATC	9 cut(s)	67, 73, 417, 532, 934, 1114, 1149, 1306, 1348
BssT1I	CCWWGG	3 cut(s)	1612, 1627, 1942
Bst2UI	CCWGG	2 cut(s)	239, 1811
Bst4CI	ACNGT	5 cut(s)	329, 1099, 1185, 1902, 2359
Bst6I	CTCTTC	2 cut(s)	1518, 2144
BstAPI	GCANNNNNTGC	2 cut(s)	380, 2033
BstAUI	TGTACA	1 cut(s)	2167
BstDEI	CTNAG	8 cut(s)	279, 367, 643, 900, 905, 2000, 2047, 2514
BstDSI	CCRYGG	1 cut(s)	2358
BstF5I	GGATG	5 cut(s)	856, 1195, 1917, 2419, 2434
BstFNI	CGCG	1 cut(s)	1024
BstH2I	RGCGCY	2 cut(s)	1158, 1316
BstHHI	GCGC	5 cut(s)	712, 1024, 1157, 1315, 2151
BstKTI	GATC	9 cut(s)	70, 76, 420, 535, 937, 1117, 1152, 1309, 1351
BstMAI	GTCTC	2 cut(s)	1575, 1952
BstMBI	GATC	9 cut(s)	67, 73, 417, 532, 934, 1114, 1149, 1306, 1348
BstMCI	CGRYCG	1 cut(s)	2215
BstMWI	GCNNNNNNNGC	8 cut(s)	380, 644, 802, 1937, 2001, 2033, 2084, 2097
BstNI	CCWGG	2 cut(s)	239, 1811
BstNSI	RCATGY	6 cut(s)	484, 560, 796, 1787, 2095, 2271
BstSCI	CCNGG	2 cut(s)	237, 1809
BstSFI	CTRYAG	5 cut(s)	83, 372, 407, 1898, 2034
BstUI	CGCG	1 cut(s)	1024
BstV2I	GAAGAC	2 cut(s)	587, 1699
BstX2I	RGATCY	3 cut(s)	67, 934, 1348
BstXI	CCANNNNNNTGG	1 cut(s)	2293
BstYI	RGATCY	3 cut(s)	67, 934, 1348
Bsu36I	CCTNAGG	1 cut(s)	2047
BsuRI	GGCC	6 cut(s)	953, 1037, 1617, 1770, 1940, 2433
BtgI	CCRYGG	1 cut(s)	2358
BtsCI	GGATG	5 cut(s)	856, 1195, 1917, 2419, 2434
BtsI	GCAGTG	4 cut(s)	33, 1479, 1653, 2043
BtsIMutI	CAGTG	8 cut(s)	33, 263, 427, 828, 1181, 1479, 1653, 2043
BveI	ACCTGC	2 cut(s)	1233, 1825
CciI	TCATGA	1 cut(s)	349
CfoI	GCGC	5 cut(s)	712, 1024, 1157, 1315, 2151
Cfr10I	RCCGGY	2 cut(s)	2450, 2473
Cfr13I	GGNCC	3 cut(s)	1558, 1814, 1939
CseI	GACGC	2 cut(s)	1457, 1577
Csp6I	GTAC	6 cut(s)	304, 458, 640, 1222, 1624, 2168
CspAI	ACCGGT	2 cut(s)	2450, 2473
CviQI	GTAC	6 cut(s)	304, 458, 640, 1222, 1624, 2168
DdeI	CTNAG	8 cut(s)	279, 367, 643, 900, 905, 2000, 2047, 2514
DpnI	GATC	9 cut(s)	69, 75, 419, 534, 936, 1116, 1151, 1308, 1350
DpnII	GATC	9 cut(s)	67, 73, 417, 532, 934, 1114, 1149, 1306, 1348
DraIII	CACNNNGTG	1 cut(s)	2243
EaeI	YGGCCR	3 cut(s)	1035, 1768, 2431
Eam1104I	CTCTTC	2 cut(s)	1518, 2144
EarI	CTCTTC	2 cut(s)	1518, 2144
Eco130I	CCWWGG	3 cut(s)	1612, 1627, 1942
Eco31I	GGTCTC	2 cut(s)	1575, 1952
Eco47I	GGWCC	2 cut(s)	1558, 1814
Eco47III	AGCGCT	1 cut(s)	1156
Eco57I	CTGAAG	6 cut(s)	204, 405, 522, 686, 695, 1872
Eco81I	CCTNAGG	1 cut(s)	2047
Eco88I	CYCGRG	2 cut(s)	98, 930
EcoO109I	RGGNCCY	1 cut(s)	1814
EcoRII	CCWGG	2 cut(s)	237, 1809
EcoT14I	CCWWGG	3 cut(s)	1612, 1627, 1942
EcoT22I	ATGCAT	1 cut(s)	1057
ErhI	CCWWGG	3 cut(s)	1612, 1627, 1942
FalI	AAGNNNNNCTT	6 cut(s)	903, 935, 968, 1000, 1446, 1478
FaqI	GGGAC	4 cut(s)	1392, 1827, 1875, 2372
FauI	CCCGC	1 cut(s)	282
FauNDI	CATATG	1 cut(s)	1393
FokI	GGATG	5 cut(s)	863, 1202, 1904, 2421, 2426
FspAI	RTGCGCAY	1 cut(s)	2150
FspBI	CTAG	4 cut(s)	801, 1169, 1382, 2590
FspI	TGCGCA	1 cut(s)	2150
GlaI	GCGC	5 cut(s)	711, 1023, 1156, 1314, 2150
HaeII	RGCGCY	2 cut(s)	1158, 1316
HaeIII	GGCC	6 cut(s)	953, 1037, 1617, 1770, 1940, 2433
HapII	CCGG	4 cut(s)	1310, 1921, 2451, 2474
HgaI	GACGC	2 cut(s)	1457, 1577
HhaI	GCGC	5 cut(s)	712, 1024, 1157, 1315, 2151
Hin6I	GCGC	5 cut(s)	710, 1022, 1155, 1313, 2149
HinP1I	GCGC	5 cut(s)	710, 1022, 1155, 1313, 2149
HincII	GTYRAC	3 cut(s)	511, 1195, 2355
HindII	GTYRAC	3 cut(s)	511, 1195, 2355
HindIII	AAGCTT	1 cut(s)	295
HinfI	GANTC	7 cut(s)	1016, 1196, 1432, 1708, 2015, 2247, 2368
HpaII	CCGG	4 cut(s)	1310, 1921, 2451, 2474
HphI	GGTGA	7 cut(s)	341, 527, 1799, 1811, 2220, 2504, 2521
Hpy166II	GTNNAC	6 cut(s)	511, 750, 1195, 1624, 2355, 2362
Hpy188I	TCNGA	9 cut(s)	223, 417, 597, 675, 705, 1437, 1691, 2020, 2212
Hpy8I	GTNNAC	6 cut(s)	511, 750, 1195, 1624, 2355, 2362
HpyAV	CCTTC	8 cut(s)	626, 905, 1772, 1789, 1918, 2144, 2540, 2548
HpyCH4III	ACNGT	5 cut(s)	329, 1099, 1185, 1902, 2359
HpyCH4IV	ACGT	1 cut(s)	1644
HpyF10VI	GCNNNNNNNGC	8 cut(s)	380, 644, 802, 1937, 2001, 2033, 2084, 2097
HpyF3I	CTNAG	8 cut(s)	279, 367, 643, 900, 905, 2000, 2047, 2514
HpySE526I	ACGT	1 cut(s)	1644
HspAI	GCGC	5 cut(s)	710, 1022, 1155, 1313, 2149
Kpn2I	TCCGGA	1 cut(s)	1920
Kzo9I	GATC	9 cut(s)	67, 73, 417, 532, 934, 1114, 1149, 1306, 1348
LmnI	GCTCC	5 cut(s)	43, 215, 1138, 1462, 1936
LweI	GCATC	4 cut(s)	625, 1900, 1926, 2116
MaeI	CTAG	4 cut(s)	801, 1169, 1382, 2590
MaeII	ACGT	1 cut(s)	1644
MaeIII	GTNAC	4 cut(s)	329, 440, 1471, 2509
MalI	GATC	9 cut(s)	69, 75, 419, 534, 936, 1116, 1151, 1308, 1350
MbiI	CCGCTC	1 cut(s)	289
MboI	GATC	9 cut(s)	67, 73, 417, 532, 934, 1114, 1149, 1306, 1348
MfeI	CAATTG	1 cut(s)	1282
MflI	RGATCY	3 cut(s)	67, 934, 1348
MlsI	TGGCCA	1 cut(s)	2433
MluNI	TGGCCA	1 cut(s)	2433
MlyI	GAGTC	3 cut(s)	1190, 1426, 1702
MmeI	TCCRAC	1 cut(s)	2235
Mox20I	TGGCCA	1 cut(s)	2433
Mph1103I	ATGCAT	1 cut(s)	1057
MroI	TCCGGA	1 cut(s)	1920
MscI	TGGCCA	1 cut(s)	2433
MseI	TTAA	7 cut(s)	540, 576, 891, 1050, 1443, 1677, 1991
MslI	CAYNNNNRTG	5 cut(s)	354, 1233, 1302, 2255, 2333
Msp20I	TGGCCA	1 cut(s)	2433
MspA1I	CMGCKG	2 cut(s)	1429, 2489
MspI	CCGG	4 cut(s)	1310, 1921, 2451, 2474
MspR9I	CCNGG	2 cut(s)	239, 1811
MunI	CAATTG	1 cut(s)	1282
Mva1269I	GAATGC	1 cut(s)	1055
MvaI	CCWGG	2 cut(s)	239, 1811
MvnI	CGCG	1 cut(s)	1024
MwoI	GCNNNNNNNGC	8 cut(s)	380, 644, 802, 1937, 2001, 2033, 2084, 2097
NdeI	CATATG	1 cut(s)	1393
NdeII	GATC	9 cut(s)	67, 73, 417, 532, 934, 1114, 1149, 1306, 1348
NlaIV	GGNNCC	4 cut(s)	1258, 1513, 1815, 2068
NmeAIII	GCCGAG	2 cut(s)	58, 1746
NmuCI	GTSAC	4 cut(s)	329, 440, 1471, 2509
NsbI	TGCGCA	1 cut(s)	2150
NsiI	ATGCAT	1 cut(s)	1057
NspI	RCATGY	6 cut(s)	484, 560, 796, 1787, 2095, 2271
PaeI	GCATGC	1 cut(s)	2095
PaeR7I	CTCGAG	2 cut(s)	98, 930
PagI	TCATGA	1 cut(s)	349
PciI	ACATGT	2 cut(s)	480, 1783
PctI	GAATGC	1 cut(s)	1055
PfeI	GAWTC	4 cut(s)	1016, 2015, 2247, 2368
PflFI	GACNNNGTC	1 cut(s)	271
PinAI	ACCGGT	2 cut(s)	2450, 2473
PleI	GAGTC	3 cut(s)	1190, 1426, 1702
PpsI	GAGTC	3 cut(s)	1190, 1426, 1702
PpuMI	RGGWCCY	1 cut(s)	1814
PscI	ACATGT	2 cut(s)	480, 1783
PshBI	ATTAAT	1 cut(s)	891
Psp1406I	AACGTT	1 cut(s)	1644
Psp5II	RGGWCCY	1 cut(s)	1814
Psp6I	CCWGG	2 cut(s)	237, 1809
PspGI	CCWGG	2 cut(s)	237, 1809
PspN4I	GGNNCC	4 cut(s)	1258, 1513, 1815, 2068
PspPI	GGNCC	3 cut(s)	1558, 1814, 1939
PspPPI	RGGWCCY	1 cut(s)	1814
PstI	CTGCAG	4 cut(s)	87, 376, 411, 2038
PsuI	RGATCY	3 cut(s)	67, 934, 1348
PsyI	GACNNNGTC	1 cut(s)	271
PvuII	CAGCTG	2 cut(s)	1429, 2489
RsaI	GTAC	6 cut(s)	305, 459, 641, 1223, 1625, 2169
RsaNI	GTAC	6 cut(s)	304, 458, 640, 1222, 1624, 2168
RseI	CAYNNNNRTG	5 cut(s)	354, 1233, 1302, 2255, 2333
SaqAI	TTAA	7 cut(s)	540, 576, 891, 1050, 1443, 1677, 1991
Sau3AI	GATC	9 cut(s)	67, 73, 417, 532, 934, 1114, 1149, 1306, 1348
Sau96I	GGNCC	3 cut(s)	1558, 1814, 1939
SchI	GAGTC	3 cut(s)	1190, 1426, 1702
ScrFI	CCNGG	2 cut(s)	239, 1811
SfaNI	GCATC	4 cut(s)	625, 1900, 1926, 2116
SfcI	CTRYAG	5 cut(s)	83, 372, 407, 1898, 2034
Sfr274I	CTCGAG	2 cut(s)	98, 930
SinI	GGWCC	2 cut(s)	1558, 1814
SlaI	CTCGAG	2 cut(s)	98, 930
SmiMI	CAYNNNNRTG	5 cut(s)	354, 1233, 1302, 2255, 2333
SmlI	CTYRAG	7 cut(s)	98, 930, 938, 1533, 1659, 1748, 2157
SmoI	CTYRAG	7 cut(s)	98, 930, 938, 1533, 1659, 1748, 2157
SphI	GCATGC	1 cut(s)	2095
SsiI	CCGC	6 cut(s)	14, 289, 506, 1287, 1360, 2215
SspMI	CTAG	4 cut(s)	801, 1169, 1382, 2590
StyD4I	CCNGG	2 cut(s)	237, 1809
StyI	CCWWGG	3 cut(s)	1612, 1627, 1942
TaaI	ACNGT	5 cut(s)	329, 1099, 1185, 1902, 2359
TaiI	ACGT	1 cut(s)	1647
TaqI	TCGA	3 cut(s)	99, 931, 2395
TaqII	GACCGA	1 cut(s)	1575
TatI	WGTACW	2 cut(s)	303, 2167
TfiI	GAWTC	4 cut(s)	1016, 2015, 2247, 2368
Tru1I	TTAA	7 cut(s)	540, 576, 891, 1050, 1443, 1677, 1991
Tru9I	TTAA	7 cut(s)	540, 576, 891, 1050, 1443, 1677, 1991
TscAI	CASTG	8 cut(s)	33, 270, 427, 828, 1188, 1486, 1660, 2043
TseFI	GTSAC	4 cut(s)	329, 440, 1471, 2509
Tsp45I	GTSAC	4 cut(s)	329, 440, 1471, 2509
TspRI	CASTG	8 cut(s)	33, 270, 427, 828, 1188, 1486, 1660, 2043
Tth111I	GACNNNGTC	1 cut(s)	271
VpaK11BI	GGWCC	2 cut(s)	1558, 1814
VspI	ATTAAT	1 cut(s)	891
XapI	RAATTY	4 cut(s)	117, 571, 1275, 1830
XceI	RCATGY	6 cut(s)	484, 560, 796, 1787, 2095, 2271
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1116, 1250
XhoI	CTCGAG	2 cut(s)	98, 930
XspI	CTAG	4 cut(s)	801, 1169, 1382, 2590
Zsp2I	ATGCAT	1 cut(s)	1057

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.