Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001027

Physical Location & Seq

Genomic Coordinates Reverse (-)

57164756 .. 57168793

Gene Structure 4038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG310200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGATTTCTGTACCATGGAAAGCCATTGCAATGGCTTTGGTTTTGCTACAAATTACAGAAGCTTTCCCTCTTTCTGGACTTGATAGAATTACCCGGTTGCCGGGTCAACCCCAAGTCGGGTTCCAGCACTATTCGGGTTATGTTACCGTTGATGAGAAAAAACAAAGAGCTCTGTTTTACTACTTTGCTGAAGCTGAAATTGAACCAGCTTCAAAGCCTCTTGTTCTCTGGCTCAATGGAGGCCCTGGTTGTTCTTCTCTGGGAGTTGGAGCATTTTCTGAAAATGGGCCATTTAGGCCTAGTGGAGAGGTATTGGTTAAAAACGAATATAGTTGGAATAGAGAAGCAAACATGCTCTATTTGGAGACACCAATTGGAGTTGGGTTCTCTTATTCAACTGATACCGCTTCTTATGAGTCTGTAAATGACCATATTACAGCCAGGGACAACCTGATGTTCTTACAAAAGTGGCTGGACAAATTCCCTCAATATAGAAACAGAAGCTTGTTTATTACAGGAGAAAGCTATGCTGGTCATTATGTTCCCCAGCTAGCAGAACTCATGCTCCAATTCAGCAAGGAGTATCACTTCAATTTAAAAGGAATTGCTTTGGGTAATCCAGTCCTAGAATATGCTACTGACTTCAATTCAAGATCCGAGTTCTTTTGGTCTCATGGATTGATATCAGATTCAACGTACAAAATGTTCACTTCAGTCTGTAACTATTCAAGATATGTGAGTGAATATTATAGAGGCTCGGTTTCACCCATTTGTTCCAAGGTGATGAGTCAAGTCAGCAGAGAAACCAGTAAATTTGTTGACAAATATGATGTCACTCTTGATGTTTGTATATCATCTGTGTTCTCCCAATCCAAAGTCCTCAGTCCCCAGCAAGTTACTGAGTCGATAGATGTATGCGTGGAAGATGAAACAGTCAACTATTTAAACAGGCTGGATGTTCAGAAGGCACTTCATGCTCGCCTTGTTGGTGTTCGGAAATGGGCAGTTTGCAGCAATGTATTGGATTATGAGCTGCTGGATTTGGAGATACCAACAATCACAATTGTAGGCAAACTCATTAAGGCAGGAATATCAGTCTTGGTTTACAGGTATATGCATGCTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009505 GO:0009506 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030054 GO:0030163 GO:0030312 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0051603 GO:0055044 GO:0070008 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

375

Amino Acids

42.42

Weight (kDa)

5.86

Isoelectric Point (pI)

39.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	34 - 370	1.5e-101	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28110 AT1G28110 AT2G33530
fragaria_vesca	FvH4_4g22840 FvH4_4g22840 FvH4_4g22840 FvH4_4g22840 FvH4_4g22840 FvH4_5g09210 FvH4_5g09210 FvH4_5g09210 FvH4_5g09210
malus_domestica	MD06G1132500.v1.1 MD08G1237600.v1.1 MD08G1237700.v1.1 MD08G1237800.v1.1 MD08G1238200.v1.1 MD08G1238400.v1.1 MD13G1129200.v1.1 MD14G1148900.v1.1 MD16G1129200.v1.1
prunus_persica	Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.5G143500_v2.0.a1 Prupe.7G030500_v2.0.a1 Prupe.7G030500_v2.0.a1
pyrus_communis	pycom06g12410 pycom08g20620 pycom08g20640 pycom08g20650 pycom08g20670 pycom13g11220 pycom14g12370 pycom16g10950
rosa_chinensis	RchiOBHm_Chr4g0429071 RchiOBHm_Chr7g0188951
rosa_laevigata	RLG00000004647 RLG00000007099
rosa_multiflora	Rmu_co8506825.1_g000001 Rmu_sc0001753.1_g000029 Rmu_sc0008629.1_g000021 Rmu_ssc0000113.1_g000005
rosa_roxburghii	Rroxscaffold_3G00265910 Rroxscaffold_5G00370710
rosa_rugosa	Rorug04G0232700 Rorug04G0232800 Rorug04G0232900 Rorug04G0232900 Rorug06G0495100
rosa_samantha	Rh4AG288500 Rh4BG294700 Rh4CG310200 Rh4DG291600 Rh7BG101900 Rh7CG103200
rosa_wichuraiana	Rw4G025010 Rw7G008600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	405
AclWI	GGATC	1 cut(s)	648
AcsI	RAATTY	2 cut(s)	479, 812
AcuI	CTGAAG	2 cut(s)	210, 696
AfaI	GTAC	2 cut(s)	12, 698
AfiI	CCNNNNNNNGG	4 cut(s)	74, 100, 116, 117
AgsI	TTSAA	8 cut(s)	203, 213, 396, 592, 646, 651, 693, 729
AjnI	CCWGG	2 cut(s)	244, 440
AloI	GAACNNNNNNTCC	2 cut(s)	549, 581
AluBI	AGCT	8 cut(s)	62, 170, 194, 209, 504, 525, 550, 1033
AluI	AGCT	8 cut(s)	62, 170, 194, 209, 504, 525, 550, 1033
Alw21I	GWGCWC	1 cut(s)	172
Alw26I	GTCTC	2 cut(s)	359, 675
AlwI	GGATC	1 cut(s)	648
AoxI	GGCC	3 cut(s)	241, 287, 296
ApeKI	GCWGC	2 cut(s)	1011, 1033
ApoI	RAATTY	2 cut(s)	479, 812
ArsI	GACNNNNNNTTYG	2 cut(s)	816, 848
AspS9I	GGNCC	2 cut(s)	242, 287
AsuC2I	CCSGG	2 cut(s)	94, 102
AsuHPI	GGTGA	2 cut(s)	756, 793
AsuNHI	GCTAGC	1 cut(s)	550
BanII	GRGCYC	1 cut(s)	172
Bbv12I	GWGCWC	1 cut(s)	172
BbvI	GCAGC	2 cut(s)	1020, 1023
BciT130I	CCWGG	2 cut(s)	246, 442
BcnI	CCSGG	2 cut(s)	94, 102
BcoDI	GTCTC	2 cut(s)	359, 675
BfaI	CTAG	3 cut(s)	300, 551, 626
BglI	GCCNNNNNGGC	1 cut(s)	295
BisI	GCNGC	2 cut(s)	1012, 1034
BlsI	GCNGC	2 cut(s)	1013, 1035
Bme1390I	CCNGG	4 cut(s)	94, 102, 246, 442
BmgT120I	GGNCC	2 cut(s)	242, 287
BmiI	GGNNCC	1 cut(s)	122
BmrFI	CCNGG	4 cut(s)	94, 102, 246, 442
BmtI	GCTAGC	1 cut(s)	554
BpuMI	CCSGG	2 cut(s)	94, 102
BsaBI	GATNNNNATC	1 cut(s)	682
BsaI	GGTCTC	1 cut(s)	675
BsaJI	CCNNGG	4 cut(s)	14, 244, 441, 777
BsaXI	ACNNNNNCTCC	2 cut(s)	549, 579
Bsc4I	CCNNNNNNNGG	4 cut(s)	74, 100, 116, 117
Bse1I	ACTGG	2 cut(s)	620, 807
Bse3DI	GCAATG	3 cut(s)	24, 36, 1021
Bse8I	GATNNNNATC	1 cut(s)	682
BseBI	CCWGG	2 cut(s)	246, 442
BseDI	CCNNGG	4 cut(s)	14, 244, 441, 777
BseGI	GGATG	1 cut(s)	961
BseJI	GATNNNNATC	1 cut(s)	682
BseLI	CCNNNNNNNGG	4 cut(s)	74, 100, 116, 117
BseMI	GCAATG	3 cut(s)	24, 36, 1021
BseMII	CTCAG	2 cut(s)	891, 895
BseNI	ACTGG	2 cut(s)	620, 807
BseXI	GCAGC	2 cut(s)	1020, 1023
BseYI	CCCAGC	2 cut(s)	546, 888
BshFI	GGCC	3 cut(s)	243, 289, 298
BsiHKAI	GWGCWC	1 cut(s)	172
BsiSI	CCGG	2 cut(s)	94, 101
BslFI	GGGAC	2 cut(s)	458, 870
BslI	CCNNNNNNNGG	4 cut(s)	74, 100, 116, 117
BsmAI	GTCTC	2 cut(s)	359, 675
BsmFI	GGGAC	2 cut(s)	458, 870
BsnI	GGCC	3 cut(s)	243, 289, 298
Bso31I	GGTCTC	1 cut(s)	675
Bsp1286I	GDGCHC	1 cut(s)	172
Bsp143I	GATC	1 cut(s)	653
Bsp19I	CCATGG	1 cut(s)	14
BspACI	CCGC	1 cut(s)	405
BspANI	GGCC	3 cut(s)	243, 289, 298
BspCNI	CTCAG	2 cut(s)	892, 894
BspLI	GGNNCC	1 cut(s)	122
BspOI	GCTAGC	1 cut(s)	554
BspPI	GGATC	1 cut(s)	648
BspTNI	GGTCTC	1 cut(s)	675
BsrDI	GCAATG	3 cut(s)	24, 36, 1021
BsrI	ACTGG	2 cut(s)	620, 807
BssECI	CCNNGG	4 cut(s)	14, 244, 441, 777
BssMI	GATC	1 cut(s)	653
BssT1I	CCWWGG	2 cut(s)	14, 777
Bst2UI	CCWGG	2 cut(s)	246, 442
Bst4CI	ACNGT	2 cut(s)	148, 934
BstAPI	GCANNNNNTGC	1 cut(s)	974
BstC8I	GCNNGC	3 cut(s)	552, 979, 1119
BstDEI	CTNAG	2 cut(s)	881, 900
BstDSI	CCRYGG	1 cut(s)	14
BstF5I	GGATG	1 cut(s)	961
BstKTI	GATC	1 cut(s)	656
BstMAI	GTCTC	2 cut(s)	359, 675
BstMBI	GATC	1 cut(s)	653
BstMWI	GCNNNNNNNGC	2 cut(s)	295, 974
BstNI	CCWGG	2 cut(s)	246, 442
BstNSI	RCATGY	2 cut(s)	355, 1121
BstSCI	CCNGG	4 cut(s)	92, 100, 244, 440
BstV1I	GCAGC	2 cut(s)	1020, 1023
BstX2I	RGATCY	1 cut(s)	653
BstXI	CCANNNNNNTGG	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	653
BsuRI	GGCC	3 cut(s)	243, 289, 298
BtgI	CCRYGG	1 cut(s)	14
BtsCI	GGATG	1 cut(s)	961
Cac8I	GCNNGC	3 cut(s)	552, 979, 1119
Cfr13I	GGNCC	2 cut(s)	242, 287
Csp6I	GTAC	2 cut(s)	11, 697
CviAII	CATG	6 cut(s)	15, 352, 562, 674, 974, 1118
CviQI	GTAC	2 cut(s)	11, 697
DdeI	CTNAG	2 cut(s)	881, 900
DpnI	GATC	1 cut(s)	655
DpnII	GATC	1 cut(s)	653
DraI	TTTAAA	2 cut(s)	597, 945
Ecl136II	GAGCTC	1 cut(s)	170
Eco130I	CCWWGG	2 cut(s)	14, 777
Eco147I	AGGCCT	1 cut(s)	298
Eco24I	GRGCYC	1 cut(s)	172
Eco31I	GGTCTC	1 cut(s)	675
Eco32I	GATATC	1 cut(s)	684
Eco53kI	GAGCTC	1 cut(s)	170
Eco57I	CTGAAG	2 cut(s)	210, 696
EcoICRI	GAGCTC	1 cut(s)	170
EcoO109I	RGGNCCY	1 cut(s)	242
EcoRII	CCWGG	2 cut(s)	244, 440
EcoRV	GATATC	1 cut(s)	684
EcoT14I	CCWWGG	2 cut(s)	14, 777
EcoT22I	ATGCAT	1 cut(s)	1119
EcoT38I	GRGCYC	1 cut(s)	172
ErhI	CCWWGG	2 cut(s)	14, 777
FaeI	CATG	6 cut(s)	18, 355, 565, 677, 977, 1121
FaqI	GGGAC	2 cut(s)	458, 870
FatI	CATG	6 cut(s)	14, 351, 561, 673, 973, 1117
Fnu4HI	GCNGC	2 cut(s)	1012, 1034
FokI	GGATG	1 cut(s)	968
FriOI	GRGCYC	1 cut(s)	172
Fsp4HI	GCNGC	2 cut(s)	1012, 1034
FspBI	CTAG	3 cut(s)	300, 551, 626
GluI	GCNGC	2 cut(s)	1012, 1034
GsaI	CCCAGC	2 cut(s)	550, 892
HaeIII	GGCC	3 cut(s)	243, 289, 298
HapII	CCGG	2 cut(s)	94, 101
Hin1II	CATG	6 cut(s)	18, 355, 565, 677, 977, 1121
HincII	GTYRAC	3 cut(s)	107, 820, 937
HindII	GTYRAC	3 cut(s)	107, 820, 937
HindIII	AAGCTT	2 cut(s)	60, 502
HinfI	GANTC	4 cut(s)	416, 689, 787, 902
HpaII	CCGG	2 cut(s)	94, 101
HphI	GGTGA	2 cut(s)	756, 793
Hpy166II	GTNNAC	5 cut(s)	107, 708, 820, 937, 1105
Hpy188I	TCNGA	5 cut(s)	280, 658, 688, 963, 996
Hpy188III	TCNNGA	4 cut(s)	75, 651, 729, 839
Hpy8I	GTNNAC	5 cut(s)	107, 708, 820, 937, 1105
HpyAV	CCTTC	1 cut(s)	958
HpyCH4III	ACNGT	2 cut(s)	148, 934
HpyCH4IV	ACGT	1 cut(s)	695
HpyCH4V	TGCA	3 cut(s)	29, 1011, 1117
HpyF10VI	GCNNNNNNNGC	2 cut(s)	295, 974
HpyF3I	CTNAG	2 cut(s)	881, 900
HpySE526I	ACGT	1 cut(s)	695
Hsp92II	CATG	6 cut(s)	18, 355, 565, 677, 977, 1121
Kzo9I	GATC	1 cut(s)	653
LmnI	GCTCC	2 cut(s)	269, 570
Lsp1109I	GCAGC	2 cut(s)	1020, 1023
MaeI	CTAG	3 cut(s)	300, 551, 626
MaeII	ACGT	1 cut(s)	695
MaeIII	GTNAC	4 cut(s)	142, 719, 832, 895
MalI	GATC	1 cut(s)	655
MboI	GATC	1 cut(s)	653
MboII	GAAGA	2 cut(s)	246, 935
MfeI	CAATTG	2 cut(s)	372, 1062
MflI	RGATCY	1 cut(s)	653
MhlI	GDGCHC	1 cut(s)	172
MlyI	GAGTC	3 cut(s)	425, 796, 911
MmeI	TCCRAC	2 cut(s)	247, 314
MnlI	CCTC	7 cut(s)	78, 228, 233, 301, 495, 746, 890
Mph1103I	ATGCAT	1 cut(s)	1119
MseI	TTAA	5 cut(s)	318, 596, 944, 1080, 1126
MslI	CAYNNNNRTG	1 cut(s)	29
MspI	CCGG	2 cut(s)	94, 101
MspR9I	CCNGG	4 cut(s)	94, 102, 246, 442
MunI	CAATTG	2 cut(s)	372, 1062
MvaI	CCWGG	2 cut(s)	246, 442
MwoI	GCNNNNNNNGC	2 cut(s)	295, 974
NciI	CCSGG	2 cut(s)	94, 102
NcoI	CCATGG	1 cut(s)	14
NdeII	GATC	1 cut(s)	653
NheI	GCTAGC	1 cut(s)	550
NlaIII	CATG	6 cut(s)	18, 355, 565, 677, 977, 1121
NlaIV	GGNNCC	1 cut(s)	122
NmuCI	GTSAC	1 cut(s)	832
NsiI	ATGCAT	1 cut(s)	1119
NspI	RCATGY	2 cut(s)	355, 1121
PaeI	GCATGC	1 cut(s)	1121
PceI	AGGCCT	1 cut(s)	298
PfeI	GAWTC	1 cut(s)	689
PkrI	GCNGC	2 cut(s)	1013, 1035
PleI	GAGTC	3 cut(s)	424, 795, 910
PpsI	GAGTC	3 cut(s)	424, 795, 910
Psp124BI	GAGCTC	1 cut(s)	172
Psp6I	CCWGG	2 cut(s)	244, 440
PspFI	CCCAGC	2 cut(s)	546, 888
PspGI	CCWGG	2 cut(s)	244, 440
PspN4I	GGNNCC	1 cut(s)	122
PspPI	GGNCC	2 cut(s)	242, 287
PsrI	GAACNNNNNNTAC	2 cut(s)	689, 721
PsuI	RGATCY	1 cut(s)	653
RsaI	GTAC	2 cut(s)	12, 698
RsaNI	GTAC	2 cut(s)	11, 697
RseI	CAYNNNNRTG	1 cut(s)	29
SacI	GAGCTC	1 cut(s)	172
SaqAI	TTAA	5 cut(s)	318, 596, 944, 1080, 1126
SatI	GCNGC	2 cut(s)	1012, 1034
Sau3AI	GATC	1 cut(s)	653
Sau96I	GGNCC	2 cut(s)	242, 287
SchI	GAGTC	3 cut(s)	425, 796, 911
ScrFI	CCNGG	4 cut(s)	94, 102, 246, 442
SduI	GDGCHC	1 cut(s)	172
SfiI	GGCCNNNNNGGCC	1 cut(s)	295
SmiMI	CAYNNNNRTG	1 cut(s)	29
SphI	GCATGC	1 cut(s)	1121
SseBI	AGGCCT	1 cut(s)	298
SsiI	CCGC	1 cut(s)	405
SspI	AATATT	1 cut(s)	746
SspMI	CTAG	3 cut(s)	300, 551, 626
SstI	GAGCTC	1 cut(s)	172
StuI	AGGCCT	1 cut(s)	298
StyD4I	CCNGG	4 cut(s)	92, 100, 244, 440
StyI	CCWWGG	2 cut(s)	14, 777
TaaI	ACNGT	2 cut(s)	148, 934
TaiI	ACGT	1 cut(s)	698
TaqI	TCGA	1 cut(s)	905
TfiI	GAWTC	1 cut(s)	689
Tru1I	TTAA	5 cut(s)	318, 596, 944, 1080, 1126
Tru9I	TTAA	5 cut(s)	318, 596, 944, 1080, 1126
TseFI	GTSAC	1 cut(s)	832
TseI	GCWGC	2 cut(s)	1011, 1033
Tsp45I	GTSAC	1 cut(s)	832
TspDTI	ATGAA	2 cut(s)	942, 962
XapI	RAATTY	2 cut(s)	479, 812
XceI	RCATGY	2 cut(s)	355, 1121
XspI	CTAG	3 cut(s)	300, 551, 626
Zsp2I	ATGCAT	1 cut(s)	1119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.