Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0001027

Physical Location & Seq

Genomic Coordinates Forward (+)

20333622 .. 20334424

Gene Structure 803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g20620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGATGCAGCTTCGACGAGGGAGGATCGTCATCGTCGCCGCAGTCTTTGCATCTGTCATCCAAGCGTTTTCCACGGCAAACTCCCTCCAAGAAGCGGATAAATTCACAAGGTTGCCAAGTCAACCACAAGTCAACTTCCAGCAATATGCAGGATATGTAACTGTGGATGAAAAGCAAGATAGATCTCTTTTTTACTACTTTGTTGAAGCACAAACTAATCCTGCTTCCAAGCCTCTTGTTCTTTGGCTCAATGGAGGTCCTGGTTGTTCATCTGTTGGAGTTGGAGCTTTCAACGAGAACGGACCTTTTCAACCAAGCGTAGACATTTTACTCAAGAACGATTTTAGTTGGAATAGAGAAGCAAATATGCTGTATTTGGAGTCACCTGCAGGAGTTGGCTTTTCCTACTCAGCAAACAAATCATTTTATGGCTTTGTGAACGACGATATCACAGGTTTTCGGTTCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

157

Amino Acids

17.35

Weight (kDa)

5.35

Isoelectric Point (pI)

39.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	42 - 142	6.2e-46	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28110 AT1G28110 AT2G33530
fragaria_vesca	FvH4_4g22840 FvH4_4g22840 FvH4_4g22840 FvH4_4g22840 FvH4_4g22840 FvH4_5g09210 FvH4_5g09210 FvH4_5g09210 FvH4_5g09210
malus_domestica	MD06G1132500.v1.1 MD08G1237600.v1.1 MD08G1237700.v1.1 MD08G1237800.v1.1 MD08G1238200.v1.1 MD08G1238400.v1.1 MD13G1129200.v1.1 MD14G1148900.v1.1 MD16G1129200.v1.1
prunus_persica	Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.5G143500_v2.0.a1 Prupe.7G030500_v2.0.a1 Prupe.7G030500_v2.0.a1
pyrus_communis	pycom06g12410 pycom08g20620 pycom08g20640 pycom08g20650 pycom08g20670 pycom13g11220 pycom14g12370 pycom16g10950
rosa_chinensis	RchiOBHm_Chr4g0429071 RchiOBHm_Chr7g0188951
rosa_laevigata	RLG00000004647 RLG00000007099
rosa_multiflora	Rmu_co8506825.1_g000001 Rmu_sc0001753.1_g000029 Rmu_sc0008629.1_g000021 Rmu_ssc0000113.1_g000005
rosa_roxburghii	Rroxscaffold_3G00265910 Rroxscaffold_5G00370710
rosa_rugosa	Rorug04G0232700 Rorug04G0232800 Rorug04G0232900 Rorug04G0232900 Rorug06G0495100
rosa_samantha	Rh4AG288500 Rh4BG294700 Rh4CG310200 Rh4DG291600 Rh7BG101900 Rh7CG103200
rosa_wichuraiana	Rw4G025010 Rw7G008600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	394
Acc36I	ACCTGC	1 cut(s)	394
AccI	GTMKAC	1 cut(s)	321
AciI	CCGC	2 cut(s)	39, 95
AclWI	GGATC	1 cut(s)	32
AcsI	RAATTY	1 cut(s)	101
AfiI	CCNNNNNNNGG	1 cut(s)	94
AgsI	TTSAA	3 cut(s)	206, 292, 311
AjnI	CCWGG	1 cut(s)	259
AluBI	AGCT	2 cut(s)	10, 287
AluI	AGCT	2 cut(s)	10, 287
AlwI	GGATC	1 cut(s)	32
ApeKI	GCWGC	1 cut(s)	7
ApoI	RAATTY	1 cut(s)	101
AspS9I	GGNCC	2 cut(s)	257, 302
AsuHPI	GGTGA	1 cut(s)	375
AvaII	GGWCC	2 cut(s)	257, 302
BbvI	GCAGC	1 cut(s)	19
BceAI	ACGGC	1 cut(s)	90
BciT130I	CCWGG	1 cut(s)	261
BfmI	CTRYAG	1 cut(s)	387
BfuAI	ACCTGC	1 cut(s)	394
BglII	AGATCT	1 cut(s)	182
BisI	GCNGC	2 cut(s)	8, 39
BlsI	GCNGC	2 cut(s)	9, 40
Bme1390I	CCNGG	1 cut(s)	261
Bme18I	GGWCC	2 cut(s)	257, 302
BmgT120I	GGNCC	2 cut(s)	257, 302
BmrFI	CCNGG	1 cut(s)	261
BmsI	GCATC	1 cut(s)	59
BpuEI	CTTGAG	1 cut(s)	317
BsaBI	GATNNNNATC	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse8I	GATNNNNATC	1 cut(s)	29
BseBI	CCWGG	1 cut(s)	261
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	2 cut(s)	57, 172
BseJI	GATNNNNATC	1 cut(s)	29
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseMII	CTCAG	1 cut(s)	423
BseXI	GCAGC	1 cut(s)	19
BslI	CCNNNNNNNGG	1 cut(s)	94
Bsp143I	GATC	2 cut(s)	24, 182
BspACI	CCGC	2 cut(s)	39, 95
BspCNI	CTCAG	1 cut(s)	422
BspMAI	CTGCAG	1 cut(s)	391
BspMI	ACCTGC	1 cut(s)	394
BspPI	GGATC	1 cut(s)	32
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	2 cut(s)	24, 182
Bst2UI	CCWGG	1 cut(s)	261
Bst4CI	ACNGT	1 cut(s)	163
BstAPI	GCANNNNNTGC	1 cut(s)	47
BstDEI	CTNAG	1 cut(s)	409
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	2 cut(s)	57, 172
BstKTI	GATC	2 cut(s)	27, 185
BstMBI	GATC	2 cut(s)	24, 182
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNI	CCWGG	1 cut(s)	261
BstSCI	CCNGG	1 cut(s)	259
BstSFI	CTRYAG	1 cut(s)	387
BstV1I	GCAGC	1 cut(s)	19
BstX2I	RGATCY	1 cut(s)	182
BstYI	RGATCY	1 cut(s)	182
BtgI	CCRYGG	1 cut(s)	72
BtsCI	GGATG	2 cut(s)	57, 172
BveI	ACCTGC	1 cut(s)	394
Cfr13I	GGNCC	2 cut(s)	257, 302
CviAII	CATG	1 cut(s)	468
CviJI	RGCY	6 cut(s)	10, 232, 247, 287, 399, 432
CviKI_1	RGCY	6 cut(s)	10, 232, 247, 287, 399, 432
DdeI	CTNAG	1 cut(s)	409
DpnI	GATC	2 cut(s)	26, 184
DpnII	GATC	2 cut(s)	24, 182
Eco32I	GATATC	1 cut(s)	448
Eco47I	GGWCC	2 cut(s)	257, 302
EcoO109I	RGGNCCY	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	259
EcoRV	GATATC	1 cut(s)	448
FaeI	CATG	1 cut(s)	471
FaiI	YATR	5 cut(s)	147, 156, 368, 429, 469
FatI	CATG	1 cut(s)	467
FblI	GTMKAC	1 cut(s)	321
Fnu4HI	GCNGC	2 cut(s)	8, 39
FokI	GGATG	2 cut(s)	44, 179
Fsp4HI	GCNGC	2 cut(s)	8, 39
GluI	GCNGC	2 cut(s)	8, 39
Hin1II	CATG	1 cut(s)	471
HincII	GTYRAC	2 cut(s)	122, 133
HindII	GTYRAC	2 cut(s)	122, 133
HinfI	GANTC	1 cut(s)	380
HphI	GGTGA	1 cut(s)	375
Hpy166II	GTNNAC	5 cut(s)	122, 133, 322, 439, 465
Hpy188III	TCNNGA	1 cut(s)	334
Hpy8I	GTNNAC	5 cut(s)	122, 133, 322, 439, 465
Hpy99I	CGWCG	3 cut(s)	18, 38, 446
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4V	TGCA	4 cut(s)	7, 50, 149, 389
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpyF3I	CTNAG	1 cut(s)	409
Hsp92II	CATG	1 cut(s)	471
Kzo9I	GATC	2 cut(s)	24, 182
LmnI	GCTCC	1 cut(s)	284
LpnPI	CCDG	8 cut(s)	135, 152, 234, 246, 273, 375, 399, 438
Lsp1109I	GCAGC	1 cut(s)	19
LweI	GCATC	1 cut(s)	59
MaeIII	GTNAC	2 cut(s)	157, 381
MalI	GATC	2 cut(s)	26, 184
MboI	GATC	2 cut(s)	24, 182
MflI	RGATCY	1 cut(s)	182
MluCI	AATT	1 cut(s)	101
MlyI	GAGTC	1 cut(s)	389
MmeI	TCCRAC	3 cut(s)	256, 262, 329
MnlI	CCTC	5 cut(s)	11, 15, 95, 243, 248
MspR9I	CCNGG	1 cut(s)	261
MvaI	CCWGG	1 cut(s)	261
MwoI	GCNNNNNNNGC	1 cut(s)	47
NdeII	GATC	2 cut(s)	24, 182
NlaIII	CATG	1 cut(s)	471
NmuCI	GTSAC	1 cut(s)	381
PaqCI	CACCTGC	1 cut(s)	394
PkrI	GCNGC	2 cut(s)	9, 40
PleI	GAGTC	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	388
PpuMI	RGGWCCY	1 cut(s)	257
Psp5II	RGGWCCY	1 cut(s)	257
Psp6I	CCWGG	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	259
PspPI	GGNCC	2 cut(s)	257, 302
PspPPI	RGGWCCY	1 cut(s)	257
PstI	CTGCAG	1 cut(s)	391
PsuI	RGATCY	1 cut(s)	182
SatI	GCNGC	2 cut(s)	8, 39
Sau3AI	GATC	2 cut(s)	24, 182
Sau96I	GGNCC	2 cut(s)	257, 302
SbfI	CCTGCAGG	1 cut(s)	391
SchI	GAGTC	1 cut(s)	389
ScrFI	CCNGG	1 cut(s)	261
SdaI	CCTGCAGG	1 cut(s)	391
SetI	ASST	7 cut(s)	12, 113, 259, 289, 307, 388, 457
SfaNI	GCATC	1 cut(s)	59
SfcI	CTRYAG	1 cut(s)	387
SinI	GGWCC	2 cut(s)	257, 302
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
Sse8387I	CCTGCAGG	1 cut(s)	391
Sse9I	AATT	1 cut(s)	101
SsiI	CCGC	2 cut(s)	39, 95
StyD4I	CCNGG	1 cut(s)	259
TaaI	ACNGT	1 cut(s)	163
TaqI	TCGA	1 cut(s)	13
TasI	AATT	1 cut(s)	101
TauI	GCSGC	1 cut(s)	41
TseFI	GTSAC	1 cut(s)	381
TseI	GCWGC	1 cut(s)	7
Tsp45I	GTSAC	1 cut(s)	381
TspDTI	ATGAA	2 cut(s)	183, 258
TspGWI	ACGGA	1 cut(s)	315
VpaK11BI	GGWCC	2 cut(s)	257, 302
XapI	RAATTY	1 cut(s)	101
XmiI	GTMKAC	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.