RLG00000004647

Belongs to the peptidase S10 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
61095305 .. 61097673
2369 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004647

Sequence Viewer

Length: 1395 bp
ATGGCAATGGCTCTACTACTTGTGCTTCAGCTGTGCTTCATTTCCATGGAGTTTGTTGAGTCCTCATCTCATCACTATGATCACAAGATAGTTAGGCTTCCAGGACAACCCAGTGTGGACTTTCAACACTTTTCAGGTTATATTTCTGTGGGCGATCATCAGAAAAACCACAAAGCTCTATTTTACTACTTTGCTGAAGCAGAAATAGACCCAGCTTCAAAGCCTTTGGTCCTCTGGTTAAATGGAGGTCCTGGTTGTTCTTCTGTTGGAGTAGGGGCTTTCTCTGAAAATGGACCTTTTAGACCAGATGGTCAAGTCCTGGTTAGGAATGAGTACAGCTGGAATATAGAGGCTAATATGTTGTATTTAGAGACACCAGTTGGTGTGGGATTCTCCTATTCTAGACATAGCTCCAACGATGTGGCAGTGGATGATGCAGCAACAGCCAGGGACAATCTTGTATTCTTACAACGCTGGTTCAACAAGTTCCCTCAATATAAGCACAGAGATTTGTTTCTAACTGGAGAAAGTTATGCAGGTCACTACATCCCTCAACTTGCAGAGCTTATTGTTGAAGCTAACAGCAAAGAGAAGTTGTTCAATCTAAAAGGACTAGCTTTGGGTAACCCTGTCCTAGAATTCGCCACTGACTTAAATTCAAGAGCTGAGTATTTCTGGTCTCATGGACTAATATCAGACTCAACATACAGAATGTTCACTTCTGTTTGCAACTATTCGCGCTACGTGAGTGAGTACTATAGAGACTCGGTTTCACCTGTTTGTTCAAGAGTTATGAACCAAGTGAGCGTAGAAACCAGTAAATTTGTGGATAAGTATGATGTCACTCTTGATGTCTGCATTTCATCTGTACTCTCACAGTCAAAGGCTATAAACCCCAACCAAATGACACAGAGGATTGATGTGTGTGTAGAAGACAAGATTGTAAGTTACTTGAACCGAAAAGATGTGCAGAAGGCTCTCCATGCTAAGCTTGTAGGGGTTCGAAGATGGGATGTTTGCAGCGATGATACTAGCATTTTGGACTACCAAATGCTCGACCTGGAAATCCCTACAATCTCACTAGTTGGATCTATTGTCAAAGCCGGAATTCCAGTGTTAGTTTACAGTGGAGATCAGGATTCTGCAATTCCATTGACGGGAAGCCGAACCTTGGTCGACAGATTGGCAAGGGAGTTAGGACTGAACACCACTGTCCCTTATAGAGTTTGGTTTCAGGGAAAACAGGTTGGTGGATGGACTCAAGTTTATGGGAACATGCTTTCATTTGCAACCATCAGAGGTGCCTCTCATGAAGCTCCATTCTCACAGCCTGAGAGATCACTCATGCTATTCAAGTCATTTCTTCAAGGCAGGGCTCTACCTCTAGTATTCTGA

Protein Analysis

465

Amino Acids

52.14

Weight (kDa)

6.07

Isoelectric Point (pI)

34.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 34 - 457 1e-125 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 309
Acc36I ACCTGC 1 cut(s) 527
AccB1I GGYRCC 1 cut(s) 1301
AccI GTMKAC 1 cut(s) 1176
AccII CGCG 1 cut(s) 739
AclWI GGATC 1 cut(s) 1096
AcsI RAATTY 4 cut(s) 638, 655, 821, 1107
AcuI CTGAAG 2 cut(s) 11, 216
AfaI GTAC 3 cut(s) 335, 755, 870
AfiI CCNNNNNNNGG 2 cut(s) 1157, 1171
AhlI ACTAGT 1 cut(s) 1081
AjnI CCWGG 5 cut(s) 100, 250, 318, 446, 1059
Alw26I GTCTC 3 cut(s) 365, 684, 756
AlwI GGATC 1 cut(s) 1096
ApeKI GCWGC 2 cut(s) 437, 1020
ApoI RAATTY 4 cut(s) 638, 655, 821, 1107
Asp700I GAANNNNTTC 1 cut(s) 596
AspLEI GCGC 1 cut(s) 741
AspS9I GGNCC 3 cut(s) 229, 248, 293
AsuHPI GGTGA 1 cut(s) 765
AsuII TTCGAA 1 cut(s) 1003
AvaII GGWCC 3 cut(s) 229, 248, 293
BanI GGYRCC 1 cut(s) 1301
BanII GRGCYC 1 cut(s) 1378
BbsI GAAGAC 1 cut(s) 939
BbvI GCAGC 2 cut(s) 449, 1032
BccI CCATC 4 cut(s) 302, 1002, 1248, 1301
BciT130I CCWGG 5 cut(s) 102, 252, 320, 448, 1061
BclI TGATCA 1 cut(s) 79
BcoDI GTCTC 3 cut(s) 365, 684, 756
BcuI ACTAGT 1 cut(s) 1081
BfaI CTAG 6 cut(s) 402, 614, 635, 1032, 1082, 1385
BfmI CTRYAG 1 cut(s) 757
BfuAI ACCTGC 1 cut(s) 527
BisI GCNGC 2 cut(s) 438, 1021
BlpI GCTNAGC 1 cut(s) 987
BlsI GCNGC 2 cut(s) 439, 1022
BmcAI AGTACT 1 cut(s) 755
Bme1390I CCNGG 5 cut(s) 102, 252, 320, 448, 1061
Bme18I GGWCC 3 cut(s) 229, 248, 293
BmgT120I GGNCC 3 cut(s) 229, 248, 293
BmiI GGNNCC 1 cut(s) 1303
BmrFI CCNGG 5 cut(s) 102, 252, 320, 448, 1061
BmrI ACTGGG 1 cut(s) 105
BmsI GCATC 1 cut(s) 424
BmuI ACTGGG 1 cut(s) 105
BpiI GAAGAC 1 cut(s) 939
BpmI CTGGAG 1 cut(s) 543
Bpu1102I GCTNAGC 1 cut(s) 987
Bpu14I TTCGAA 1 cut(s) 1003
BpuEI CTTGAG 1 cut(s) 1245
BsaAI YACGTR 1 cut(s) 745
BsaI GGTCTC 1 cut(s) 684
BsaJI CCNNGG 3 cut(s) 45, 447, 1170
Bsc4I CCNNNNNNNGG 2 cut(s) 1157, 1171
Bse1I ACTGG 5 cut(s) 111, 377, 526, 816, 1112
Bse3DI GCAATG 1 cut(s) 12
BseBI CCWGG 5 cut(s) 102, 252, 320, 448, 1061
BseDI CCNNGG 3 cut(s) 45, 447, 1170
BseGI GGATG 4 cut(s) 436, 546, 1018, 1259
BseLI CCNNNNNNNGG 2 cut(s) 1157, 1171
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 2 cut(s) 657, 1323
BseNI ACTGG 5 cut(s) 111, 377, 526, 816, 1112
BseXI GCAGC 2 cut(s) 449, 1032
BseYI CCCAGC 1 cut(s) 211
BsgI GTGCAG 1 cut(s) 989
Bsh1236I CGCG 1 cut(s) 739
BshNI GGYRCC 1 cut(s) 1301
BsiSI CCGG 1 cut(s) 1104
BslFI GGGAC 2 cut(s) 464, 1199
BslI CCNNNNNNNGG 2 cut(s) 1157, 1171
BsmAI GTCTC 3 cut(s) 365, 684, 756
BsmFI GGGAC 2 cut(s) 464, 1199
Bso31I GGTCTC 1 cut(s) 684
Bsp119I TTCGAA 1 cut(s) 1003
Bsp1286I GDGCHC 1 cut(s) 1378
Bsp143I GATC 5 cut(s) 79, 154, 1088, 1132, 1337
Bsp1720I GCTNAGC 1 cut(s) 987
Bsp19I CCATGG 1 cut(s) 45
BspCNI CTCAG 2 cut(s) 658, 1324
BspFNI CGCG 1 cut(s) 739
BspHI TCATGA 1 cut(s) 1309
BspLI GGNNCC 1 cut(s) 1303
BspMI ACCTGC 1 cut(s) 527
BspPI GGATC 1 cut(s) 1096
BspT104I TTCGAA 1 cut(s) 1003
BspT107I GGYRCC 1 cut(s) 1301
BspTNI GGTCTC 1 cut(s) 684
BsrDI GCAATG 1 cut(s) 12
BsrI ACTGG 5 cut(s) 111, 377, 526, 816, 1112
BssECI CCNNGG 3 cut(s) 45, 447, 1170
BssMI GATC 5 cut(s) 79, 154, 1088, 1132, 1337
BssT1I CCWWGG 2 cut(s) 45, 1170
Bst2UI CCWGG 5 cut(s) 102, 252, 320, 448, 1061
Bst4CI ACNGT 3 cut(s) 879, 1127, 1213
BstBAI YACGTR 1 cut(s) 745
BstBI TTCGAA 1 cut(s) 1003
BstDEI CTNAG 3 cut(s) 666, 987, 1332
BstDSI CCRYGG 1 cut(s) 45
BstEII GGTNACC 1 cut(s) 623
BstF5I GGATG 4 cut(s) 436, 546, 1018, 1259
BstFNI CGCG 1 cut(s) 739
BstHHI GCGC 1 cut(s) 741
BstKTI GATC 5 cut(s) 82, 157, 1091, 1135, 1340
BstMAI GTCTC 3 cut(s) 365, 684, 756
BstMBI GATC 5 cut(s) 79, 154, 1088, 1132, 1337
BstMWI GCNNNNNNNGC 2 cut(s) 443, 983
BstNI CCWGG 5 cut(s) 102, 252, 320, 448, 1061
BstNSI RCATGY 1 cut(s) 1279
BstPI GGTNACC 1 cut(s) 623
BstSCI CCNGG 5 cut(s) 100, 250, 318, 446, 1059
BstSFI CTRYAG 1 cut(s) 757
BstUI CGCG 1 cut(s) 739
BstV1I GCAGC 2 cut(s) 449, 1032
BstV2I GAAGAC 1 cut(s) 939
BstX2I RGATCY 1 cut(s) 1088
BstXI CCANNNNNNTGG 1 cut(s) 421
BstYI RGATCY 1 cut(s) 1088
BtgI CCRYGG 1 cut(s) 45
BtgZI GCGATG 1 cut(s) 1038
BtsCI GGATG 4 cut(s) 436, 546, 1018, 1259
BtsI GCAGTG 1 cut(s) 432
BtsIMutI CAGTG 6 cut(s) 118, 432, 645, 1119, 1132, 1209
BveI ACCTGC 1 cut(s) 527
CciI TCATGA 1 cut(s) 1309
CfoI GCGC 1 cut(s) 741
Cfr13I GGNCC 3 cut(s) 229, 248, 293
Csp6I GTAC 3 cut(s) 334, 754, 869
CviAII CATG 6 cut(s) 46, 683, 983, 1276, 1310, 1345
CviQI GTAC 3 cut(s) 334, 754, 869
DdeI CTNAG 3 cut(s) 666, 987, 1332
DpnI GATC 5 cut(s) 81, 156, 1090, 1134, 1339
DpnII GATC 5 cut(s) 79, 154, 1088, 1132, 1337
DrdI GACNNNNNNGTC 1 cut(s) 309
DseDI GACNNNNNNGTC 1 cut(s) 309
Eco130I CCWWGG 2 cut(s) 45, 1170
Eco24I GRGCYC 1 cut(s) 1378
Eco31I GGTCTC 1 cut(s) 684
Eco47I GGWCC 3 cut(s) 229, 248, 293
Eco57I CTGAAG 2 cut(s) 11, 216
Eco91I GGTNACC 1 cut(s) 623
EcoO109I RGGNCCY 1 cut(s) 248
EcoO65I GGTNACC 1 cut(s) 623
EcoRI GAATTC 2 cut(s) 638, 1107
EcoRII CCWGG 5 cut(s) 100, 250, 318, 446, 1059
EcoT14I CCWWGG 2 cut(s) 45, 1170
EcoT38I GRGCYC 1 cut(s) 1378
ErhI CCWWGG 2 cut(s) 45, 1170
FaeI CATG 6 cut(s) 49, 686, 986, 1279, 1313, 1348
FaqI GGGAC 2 cut(s) 464, 1199
FatI CATG 6 cut(s) 45, 682, 982, 1275, 1309, 1344
FbaI TGATCA 1 cut(s) 79
FblI GTMKAC 1 cut(s) 1176
Fnu4HI GCNGC 2 cut(s) 438, 1021
FokI GGATG 4 cut(s) 443, 533, 1025, 1266
FriOI GRGCYC 1 cut(s) 1378
Fsp4HI GCNGC 2 cut(s) 438, 1021
FspBI CTAG 6 cut(s) 402, 614, 635, 1032, 1082, 1385
GlaI GCGC 1 cut(s) 740
GluI GCNGC 2 cut(s) 438, 1021
GsaI CCCAGC 1 cut(s) 215
GsuI CTGGAG 1 cut(s) 543
HapII CCGG 1 cut(s) 1104
HhaI GCGC 1 cut(s) 741
Hin1II CATG 6 cut(s) 49, 686, 986, 1279, 1313, 1348
Hin6I GCGC 1 cut(s) 739
HinP1I GCGC 1 cut(s) 739
HincII GTYRAC 1 cut(s) 1177
HindII GTYRAC 1 cut(s) 1177
HindIII AAGCTT 1 cut(s) 989
HinfI GANTC 6 cut(s) 59, 390, 698, 764, 1139, 1258
HpaII CCGG 1 cut(s) 1104
HphI GGTGA 1 cut(s) 765
Hpy166II GTNNAC 4 cut(s) 118, 717, 1123, 1177
Hpy188I TCNGA 5 cut(s) 162, 286, 697, 1298, 1394
Hpy188III TCNNGA 6 cut(s) 402, 660, 786, 848, 1136, 1310
Hpy8I GTNNAC 4 cut(s) 118, 717, 1123, 1177
HpyAV CCTTC 1 cut(s) 967
HpyCH4III ACNGT 3 cut(s) 879, 1127, 1213
HpyCH4IV ACGT 1 cut(s) 744
HpyCH4V TGCA 9 cut(s) 437, 536, 560, 729, 858, 970, 1020, 1145, 1289
HpyF10VI GCNNNNNNNGC 2 cut(s) 443, 983
HpyF3I CTNAG 3 cut(s) 666, 987, 1332
HpySE526I ACGT 1 cut(s) 744
Hsp92II CATG 6 cut(s) 49, 686, 986, 1279, 1313, 1348
HspAI GCGC 1 cut(s) 739
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 5 cut(s) 79, 154, 1088, 1132, 1337
LmnI GCTCC 2 cut(s) 416, 1321
Lsp1109I GCAGC 2 cut(s) 449, 1032
LweI GCATC 1 cut(s) 424
MaeI CTAG 6 cut(s) 402, 614, 635, 1032, 1082, 1385
MaeII ACGT 1 cut(s) 744
MaeIII GTNAC 4 cut(s) 539, 623, 841, 947
MalI GATC 5 cut(s) 81, 156, 1090, 1134, 1339
MboI GATC 5 cut(s) 79, 154, 1088, 1132, 1337
MboII GAAGA 4 cut(s) 252, 944, 1017, 1355
MflI RGATCY 1 cut(s) 1088
MhlI GDGCHC 1 cut(s) 1378
MluCI AATT 5 cut(s) 638, 655, 821, 1107, 1146
MlyI GAGTC 4 cut(s) 68, 692, 758, 1252
MmeI TCCRAC 3 cut(s) 247, 438, 1066
MroXI GAANNNNTTC 1 cut(s) 596
MseI TTAA 2 cut(s) 239, 653
MslI CAYNNNNRTG 2 cut(s) 44, 75
MspA1I CMGCKG 2 cut(s) 31, 339
MspI CCGG 1 cut(s) 1104
MspR9I CCNGG 5 cut(s) 102, 252, 320, 448, 1061
MvaI CCWGG 5 cut(s) 102, 252, 320, 448, 1061
MvnI CGCG 1 cut(s) 739
MwoI GCNNNNNNNGC 2 cut(s) 443, 983
NcoI CCATGG 1 cut(s) 45
NdeII GATC 5 cut(s) 79, 154, 1088, 1132, 1337
NlaIII CATG 6 cut(s) 49, 686, 986, 1279, 1313, 1348
NlaIV GGNNCC 1 cut(s) 1303
NmuCI GTSAC 2 cut(s) 539, 841
NspI RCATGY 1 cut(s) 1279
NspV TTCGAA 1 cut(s) 1003
PagI TCATGA 1 cut(s) 1309
PdmI GAANNNNTTC 1 cut(s) 596
PfeI GAWTC 2 cut(s) 390, 1139
PfoI TCCNGGA 1 cut(s) 100
PkrI GCNGC 2 cut(s) 439, 1022
PleI GAGTC 4 cut(s) 67, 692, 758, 1252
PpsI GAGTC 4 cut(s) 67, 692, 758, 1252
Ppu21I YACGTR 1 cut(s) 745
PpuMI RGGWCCY 1 cut(s) 248
Psp5II RGGWCCY 1 cut(s) 248
Psp6I CCWGG 5 cut(s) 100, 250, 318, 446, 1059
PspEI GGTNACC 1 cut(s) 623
PspFI CCCAGC 1 cut(s) 211
PspGI CCWGG 5 cut(s) 100, 250, 318, 446, 1059
PspN4I GGNNCC 1 cut(s) 1303
PspPI GGNCC 3 cut(s) 229, 248, 293
PspPPI RGGWCCY 1 cut(s) 248
PsuI RGATCY 1 cut(s) 1088
PvuII CAGCTG 2 cut(s) 31, 339
RsaI GTAC 3 cut(s) 335, 755, 870
RsaNI GTAC 3 cut(s) 334, 754, 869
RseI CAYNNNNRTG 2 cut(s) 44, 75
SalI GTCGAC 1 cut(s) 1175
SaqAI TTAA 2 cut(s) 239, 653
SatI GCNGC 2 cut(s) 438, 1021
Sau3AI GATC 5 cut(s) 79, 154, 1088, 1132, 1337
Sau96I GGNCC 3 cut(s) 229, 248, 293
ScaI AGTACT 1 cut(s) 755
SchI GAGTC 4 cut(s) 68, 692, 758, 1252
ScrFI CCNGG 5 cut(s) 102, 252, 320, 448, 1061
SduI GDGCHC 1 cut(s) 1378
SfaNI GCATC 1 cut(s) 424
SfcI CTRYAG 1 cut(s) 757
SfuI TTCGAA 1 cut(s) 1003
SinI GGWCC 3 cut(s) 229, 248, 293
SmiMI CAYNNNNRTG 2 cut(s) 44, 75
SmlI CTYRAG 1 cut(s) 1260
SmoI CTYRAG 1 cut(s) 1260
SpeI ACTAGT 1 cut(s) 1081
Sse9I AATT 5 cut(s) 638, 655, 821, 1107, 1146
SspMI CTAG 6 cut(s) 402, 614, 635, 1032, 1082, 1385
StyD4I CCNGG 5 cut(s) 100, 250, 318, 446, 1059
StyI CCWWGG 2 cut(s) 45, 1170
TaaI ACNGT 3 cut(s) 879, 1127, 1213
TaiI ACGT 1 cut(s) 747
TaqI TCGA 3 cut(s) 1003, 1056, 1176
TasI AATT 5 cut(s) 638, 655, 821, 1107, 1146
TatI WGTACW 3 cut(s) 333, 753, 868
TfiI GAWTC 2 cut(s) 390, 1139
Tru1I TTAA 2 cut(s) 239, 653
Tru9I TTAA 2 cut(s) 239, 653
TscAI CASTG 6 cut(s) 118, 432, 652, 1119, 1132, 1216
TseFI GTSAC 2 cut(s) 539, 841
TseI GCWGC 2 cut(s) 437, 1020
Tsp45I GTSAC 2 cut(s) 539, 841
TspDTI ATGAA 5 cut(s) 28, 809, 852, 1272, 1326
TspRI CASTG 6 cut(s) 118, 432, 652, 1119, 1132, 1216
VpaK11BI GGWCC 3 cut(s) 229, 248, 293
XapI RAATTY 4 cut(s) 638, 655, 821, 1107
XbaI TCTAGA 1 cut(s) 401
XceI RCATGY 1 cut(s) 1279
XcmI CCANNNNNNNNNTGG 1 cut(s) 823
XmiI GTMKAC 1 cut(s) 1176
XmnI GAANNNNTTC 1 cut(s) 596
XspI CTAG 6 cut(s) 402, 614, 635, 1032, 1082, 1385
ZrmI AGTACT 1 cut(s) 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.