Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001027

Physical Location & Seq

Genomic Coordinates Reverse (-)

53936945 .. 53941073

Gene Structure 4129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39791

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

ATGATTTCTGTACCATGGAAAGCCATTGCAATGGCTTTGGTTTTGCTACAAATTACAGCAGCTTTCCCTCTTTCTGGACTTGATAGAATTACCCGGTTGCCGGGTCAACCCCAAGTCGGGTTCCAGCACTATTCGGGTTATGTTACCGTTGATGAGAAAAAACAAAGAGCTCTGTTTTACTACTTTGCTGAAGCTGAAATTGAACCAGCTTCAAAGCCTCTTGTTCTCTGGCTCAATGGAGGGCCTGGTTGTTCTTCTCTGGGAGTTGGAGCATTTTCTGAAAATGGGCCATTTAGGCCTAGTGGAGAGGTATTGGTTAAAAACGAATATAGTTGGAATAGAGAAGCAAACATGCTCTATTTGGAGACACCAATTGGAGTTGGGTTCTCTTATTCAACTGATACCGCTTCTTATGAGTCTGTAAATGACCATATTACAGCCAGGGACAATCTGATGTTCTTACAAAAGTGGCTGGACAAATTCCCTCAATATAGAAACAGAAGCTTGTTTATTACAGGAGAAAGCTATGCTGGTCATTATGTTCCCCAGCTAGCAGAACTCATGCTCCAATTCAGCAAGGAGTATCACTTCAATTTAAAAGGAATTGCTTTGGGTAATCCAGTCCTAGAATATGCTACTGACTTCAATTCAAGATCCGAGTTCTTTTGGTCTCATGGATTGATATCAGATTCAACGTACAAAATGTTCACTTCAGTCTGTAACTATTCAAGATATGTGAGTGAATATTATAGAGGCTCGGTTTCACCTATTTGTTCCAAGGTGATGAGTCAAGTCAGCAGAGAAACCAGTAAATTTGTTGACAAATATGATGTCACTCTTGATGTTTGTATATCATCTGTGTTCTCCCAATCCAAAGTCCTCAGTCCCCAGCAAGTTACTGAGTCGATAGATGTATGCGTGGAAGATGAAACAGTCAACTATTTAAACAGGCTGGATGTGCAGAAGGCACTTCATGCTCGCCTTGTTGGTGTTCGGAAATGGGCAGTTTGCAGCACTGTATTGGATTATGAGCTGCTGGATTTGGAGATACCAACAATCACAATTGTAGGCAAACTCATTAAGGCAGGAATATCAGTCTTGGTTTACAGTGGCGACCAAGATTCTGTTATTCCATTGACCGGTAGTCGAACATTAGTTCATGGACTTGCAGAGGAACTAAAACTAAATACCACTGTTCCTTATAGAGTCTGGTTTGAGGGGCAGCAGGTTGGTGGGTGGACTCAAGTTTATGGTAATATGCTTTCCTTCGCCACGATTAGAGGAGCATCGCATGAAGCACCATTCTCGCAGCCTGAAAGGTCACTTGTACTGTTTAAATCATTTCTGGAGGGCCTACCGCTACCAGAAGCATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009505 GO:0009506 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030054 GO:0030163 GO:0030312 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0051603 GO:0055044 GO:0070008 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

458

Amino Acids

51.37

Weight (kDa)

5.6

Isoelectric Point (pI)

36.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	34 - 451	8.3e-126	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28110 AT1G28110 AT2G33530
fragaria_vesca	FvH4_4g22840 FvH4_4g22840 FvH4_4g22840 FvH4_4g22840 FvH4_4g22840 FvH4_5g09210 FvH4_5g09210 FvH4_5g09210 FvH4_5g09210
malus_domestica	MD06G1132500.v1.1 MD08G1237600.v1.1 MD08G1237700.v1.1 MD08G1237800.v1.1 MD08G1238200.v1.1 MD08G1238400.v1.1 MD13G1129200.v1.1 MD14G1148900.v1.1 MD16G1129200.v1.1
prunus_persica	Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.5G143500_v2.0.a1 Prupe.7G030500_v2.0.a1 Prupe.7G030500_v2.0.a1
pyrus_communis	pycom06g12410 pycom08g20620 pycom08g20640 pycom08g20650 pycom08g20670 pycom13g11220 pycom14g12370 pycom16g10950
rosa_chinensis	RchiOBHm_Chr4g0429071 RchiOBHm_Chr7g0188951
rosa_laevigata	RLG00000004647 RLG00000007099
rosa_multiflora	Rmu_co8506825.1_g000001 Rmu_sc0001753.1_g000029 Rmu_sc0008629.1_g000021 Rmu_ssc0000113.1_g000005
rosa_roxburghii	Rroxscaffold_3G00265910 Rroxscaffold_5G00370710
rosa_rugosa	Rorug04G0232700 Rorug04G0232800 Rorug04G0232900 Rorug04G0232900 Rorug06G0495100
rosa_samantha	Rh4AG288500 Rh4BG294700 Rh4CG310200 Rh4DG291600 Rh7BG101900 Rh7CG103200
rosa_wichuraiana	Rw4G025010 Rw7G008600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1216
AciI	CCGC	2 cut(s)	405, 1358
AclWI	GGATC	1 cut(s)	648
AcsI	RAATTY	2 cut(s)	479, 812
AcuI	CTGAAG	2 cut(s)	210, 696
AfaI	GTAC	3 cut(s)	12, 698, 1329
AfiI	CCNNNNNNNGG	5 cut(s)	74, 100, 116, 117, 1139
AgeI	ACCGGT	1 cut(s)	1139
AgsI	TTSAA	8 cut(s)	203, 213, 396, 592, 646, 651, 693, 729
AhdI	GACNNNNNGTC	1 cut(s)	1143
AjnI	CCWGG	2 cut(s)	244, 440
AloI	GAACNNNNNNTCC	2 cut(s)	549, 581
AluBI	AGCT	8 cut(s)	62, 170, 194, 209, 504, 525, 550, 1033
AluI	AGCT	8 cut(s)	62, 170, 194, 209, 504, 525, 550, 1033
Alw21I	GWGCWC	1 cut(s)	172
Alw26I	GTCTC	2 cut(s)	359, 675
AlwI	GGATC	1 cut(s)	648
AoxI	GGCC	4 cut(s)	242, 287, 296, 1351
ApeKI	GCWGC	5 cut(s)	59, 1011, 1033, 1222, 1309
ApoI	RAATTY	2 cut(s)	479, 812
ArsI	GACNNNNNNTTYG	2 cut(s)	816, 848
AsiGI	ACCGGT	1 cut(s)	1139
AspS9I	GGNCC	3 cut(s)	242, 287, 1351
AsuC2I	CCSGG	2 cut(s)	94, 102
AsuHPI	GGTGA	2 cut(s)	756, 793
AsuNHI	GCTAGC	1 cut(s)	550
BanII	GRGCYC	1 cut(s)	172
Bbv12I	GWGCWC	1 cut(s)	172
BbvI	GCAGC	5 cut(s)	71, 1020, 1023, 1234, 1321
BcgI	CGANNNNNNTGC	2 cut(s)	1287, 1321
BciT130I	CCWGG	2 cut(s)	246, 442
BcnI	CCSGG	2 cut(s)	94, 102
BcoDI	GTCTC	2 cut(s)	359, 675
BfaI	CTAG	3 cut(s)	300, 551, 626
BfuAI	ACCTGC	1 cut(s)	1216
BglI	GCCNNNNNGGC	1 cut(s)	295
BisI	GCNGC	5 cut(s)	60, 1012, 1034, 1223, 1310
BlsI	GCNGC	5 cut(s)	61, 1013, 1035, 1224, 1311
Bme1390I	CCNGG	4 cut(s)	94, 102, 246, 442
BmeRI	GACNNNNNGTC	1 cut(s)	1143
BmgT120I	GGNCC	3 cut(s)	242, 287, 1351
BmiI	GGNNCC	1 cut(s)	122
BmrFI	CCNGG	4 cut(s)	94, 102, 246, 442
BmsI	GCATC	1 cut(s)	1295
BmtI	GCTAGC	1 cut(s)	554
BpmI	CTGGAG	1 cut(s)	1367
BpuEI	CTTGAG	1 cut(s)	1227
BpuMI	CCSGG	2 cut(s)	94, 102
BsaBI	GATNNNNATC	1 cut(s)	682
BsaI	GGTCTC	1 cut(s)	675
BsaJI	CCNNGG	3 cut(s)	14, 441, 777
BsaWI	WCCGGW	1 cut(s)	1139
BsaXI	ACNNNNNCTCC	2 cut(s)	549, 579
Bsc4I	CCNNNNNNNGG	5 cut(s)	74, 100, 116, 117, 1139
Bse118I	RCCGGY	1 cut(s)	1139
Bse1I	ACTGG	2 cut(s)	620, 807
Bse3DI	GCAATG	2 cut(s)	24, 36
Bse8I	GATNNNNATC	1 cut(s)	682
BseBI	CCWGG	2 cut(s)	246, 442
BseDI	CCNNGG	3 cut(s)	14, 441, 777
BseGI	GGATG	1 cut(s)	961
BseJI	GATNNNNATC	1 cut(s)	682
BseLI	CCNNNNNNNGG	5 cut(s)	74, 100, 116, 117, 1139
BseMI	GCAATG	2 cut(s)	24, 36
BseMII	CTCAG	2 cut(s)	891, 895
BseNI	ACTGG	2 cut(s)	620, 807
BseRI	GAGGAG	1 cut(s)	1296
BseXI	GCAGC	5 cut(s)	71, 1020, 1023, 1234, 1321
BseYI	CCCAGC	2 cut(s)	546, 888
BsgI	GTGCAG	1 cut(s)	980
BshFI	GGCC	4 cut(s)	244, 289, 298, 1353
BshTI	ACCGGT	1 cut(s)	1139
BsiHKAI	GWGCWC	1 cut(s)	172
BsiSI	CCGG	3 cut(s)	94, 101, 1140
BslFI	GGGAC	2 cut(s)	458, 870
BslI	CCNNNNNNNGG	5 cut(s)	74, 100, 116, 117, 1139
BsmAI	GTCTC	2 cut(s)	359, 675
BsmFI	GGGAC	2 cut(s)	458, 870
BsmI	GAATGC	1 cut(s)	1370
BsnI	GGCC	4 cut(s)	244, 289, 298, 1353
Bso31I	GGTCTC	1 cut(s)	675
Bsp1286I	GDGCHC	1 cut(s)	172
Bsp143I	GATC	1 cut(s)	653
Bsp19I	CCATGG	1 cut(s)	14
BspACI	CCGC	2 cut(s)	405, 1358
BspANI	GGCC	4 cut(s)	244, 289, 298, 1353
BspCNI	CTCAG	2 cut(s)	892, 894
BspLI	GGNNCC	1 cut(s)	122
BspMI	ACCTGC	1 cut(s)	1216
BspOI	GCTAGC	1 cut(s)	554
BspPI	GGATC	1 cut(s)	648
BspTNI	GGTCTC	1 cut(s)	675
BsrDI	GCAATG	2 cut(s)	24, 36
BsrFI	RCCGGY	1 cut(s)	1139
BsrI	ACTGG	2 cut(s)	620, 807
BssAI	RCCGGY	1 cut(s)	1139
BssECI	CCNNGG	3 cut(s)	14, 441, 777
BssMI	GATC	1 cut(s)	653
BssT1I	CCWWGG	2 cut(s)	14, 777
Bst2UI	CCWGG	2 cut(s)	246, 442
Bst4CI	ACNGT	6 cut(s)	148, 934, 1018, 1109, 1195, 1332
BstAPI	GCANNNNNTGC	1 cut(s)	974
BstC8I	GCNNGC	2 cut(s)	552, 979
BstDEI	CTNAG	2 cut(s)	881, 900
BstDSI	CCRYGG	1 cut(s)	14
BstF5I	GGATG	1 cut(s)	961
BstKTI	GATC	1 cut(s)	656
BstMAI	GTCTC	2 cut(s)	359, 675
BstMBI	GATC	1 cut(s)	653
BstMWI	GCNNNNNNNGC	3 cut(s)	295, 958, 974
BstNI	CCWGG	2 cut(s)	246, 442
BstNSI	RCATGY	1 cut(s)	355
BstSCI	CCNGG	4 cut(s)	92, 100, 244, 440
BstV1I	GCAGC	5 cut(s)	71, 1020, 1023, 1234, 1321
BstX2I	RGATCY	1 cut(s)	653
BstXI	CCANNNNNNTGG	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	653
BsuRI	GGCC	4 cut(s)	244, 289, 298, 1353
BtgI	CCRYGG	1 cut(s)	14
BtgZI	GCGATG	1 cut(s)	1272
BtsCI	GGATG	1 cut(s)	961
BtsIMutI	CAGTG	3 cut(s)	1014, 1114, 1191
BveI	ACCTGC	1 cut(s)	1216
Cac8I	GCNNGC	2 cut(s)	552, 979
Cfr10I	RCCGGY	1 cut(s)	1139
Cfr13I	GGNCC	3 cut(s)	242, 287, 1351
Csp6I	GTAC	3 cut(s)	11, 697, 1328
CspAI	ACCGGT	1 cut(s)	1139
CviAII	CATG	7 cut(s)	15, 352, 562, 674, 974, 1160, 1292
CviQI	GTAC	3 cut(s)	11, 697, 1328
DdeI	CTNAG	2 cut(s)	881, 900
DpnI	GATC	1 cut(s)	655
DpnII	GATC	1 cut(s)	653
DraI	TTTAAA	3 cut(s)	597, 945, 1336
DriI	GACNNNNNGTC	1 cut(s)	1143
Eam1105I	GACNNNNNGTC	1 cut(s)	1143
Ecl136II	GAGCTC	1 cut(s)	170
Eco130I	CCWWGG	2 cut(s)	14, 777
Eco147I	AGGCCT	1 cut(s)	298
Eco24I	GRGCYC	1 cut(s)	172
Eco31I	GGTCTC	1 cut(s)	675
Eco32I	GATATC	1 cut(s)	684
Eco53kI	GAGCTC	1 cut(s)	170
Eco57I	CTGAAG	2 cut(s)	210, 696
EcoICRI	GAGCTC	1 cut(s)	170
EcoO109I	RGGNCCY	2 cut(s)	242, 1351
EcoRII	CCWGG	2 cut(s)	244, 440
EcoRV	GATATC	1 cut(s)	684
EcoT14I	CCWWGG	2 cut(s)	14, 777
EcoT38I	GRGCYC	1 cut(s)	172
ErhI	CCWWGG	2 cut(s)	14, 777
FaeI	CATG	7 cut(s)	18, 355, 565, 677, 977, 1163, 1295
FaqI	GGGAC	2 cut(s)	458, 870
FatI	CATG	7 cut(s)	14, 351, 561, 673, 973, 1159, 1291
Fnu4HI	GCNGC	5 cut(s)	60, 1012, 1034, 1223, 1310
FokI	GGATG	1 cut(s)	968
FriOI	GRGCYC	1 cut(s)	172
Fsp4HI	GCNGC	5 cut(s)	60, 1012, 1034, 1223, 1310
FspBI	CTAG	3 cut(s)	300, 551, 626
GluI	GCNGC	5 cut(s)	60, 1012, 1034, 1223, 1310
GsaI	CCCAGC	2 cut(s)	550, 892
GsuI	CTGGAG	1 cut(s)	1367
HaeIII	GGCC	4 cut(s)	244, 289, 298, 1353
HapII	CCGG	3 cut(s)	94, 101, 1140
Hin1II	CATG	7 cut(s)	18, 355, 565, 677, 977, 1163, 1295
HincII	GTYRAC	3 cut(s)	107, 820, 937
HindII	GTYRAC	3 cut(s)	107, 820, 937
HindIII	AAGCTT	1 cut(s)	502
HinfI	GANTC	7 cut(s)	416, 689, 787, 902, 1121, 1206, 1240
HpaII	CCGG	3 cut(s)	94, 101, 1140
HphI	GGTGA	2 cut(s)	756, 793
Hpy166II	GTNNAC	6 cut(s)	107, 708, 820, 937, 1105, 1239
Hpy188I	TCNGA	6 cut(s)	280, 453, 658, 688, 996, 1376
Hpy188III	TCNNGA	5 cut(s)	75, 651, 729, 839, 1346
Hpy8I	GTNNAC	6 cut(s)	107, 708, 820, 937, 1105, 1239
HpyAV	CCTTC	2 cut(s)	958, 1276
HpyCH4III	ACNGT	6 cut(s)	148, 934, 1018, 1109, 1195, 1332
HpyCH4IV	ACGT	1 cut(s)	695
HpyCH4V	TGCA	4 cut(s)	29, 961, 1011, 1169
HpyF10VI	GCNNNNNNNGC	3 cut(s)	295, 958, 974
HpyF3I	CTNAG	2 cut(s)	881, 900
HpySE526I	ACGT	1 cut(s)	695
Hsp92II	CATG	7 cut(s)	18, 355, 565, 677, 977, 1163, 1295
Kzo9I	GATC	1 cut(s)	653
LmnI	GCTCC	3 cut(s)	269, 570, 1283
Lsp1109I	GCAGC	5 cut(s)	71, 1020, 1023, 1234, 1321
LweI	GCATC	1 cut(s)	1295
MaeI	CTAG	3 cut(s)	300, 551, 626
MaeII	ACGT	1 cut(s)	695
MaeIII	GTNAC	5 cut(s)	142, 719, 832, 895, 1320
MalI	GATC	1 cut(s)	655
MboI	GATC	1 cut(s)	653
MboII	GAAGA	2 cut(s)	246, 935
MfeI	CAATTG	2 cut(s)	372, 1062
MflI	RGATCY	1 cut(s)	653
MhlI	GDGCHC	1 cut(s)	172
MlyI	GAGTC	5 cut(s)	425, 796, 911, 1215, 1234
MmeI	TCCRAC	2 cut(s)	247, 314
MseI	TTAA	5 cut(s)	318, 596, 944, 1080, 1335
MslI	CAYNNNNRTG	1 cut(s)	29
MspI	CCGG	3 cut(s)	94, 101, 1140
MspR9I	CCNGG	4 cut(s)	94, 102, 246, 442
MunI	CAATTG	2 cut(s)	372, 1062
Mva1269I	GAATGC	1 cut(s)	1370
MvaI	CCWGG	2 cut(s)	246, 442
MwoI	GCNNNNNNNGC	3 cut(s)	295, 958, 974
NciI	CCSGG	2 cut(s)	94, 102
NcoI	CCATGG	1 cut(s)	14
NdeII	GATC	1 cut(s)	653
NheI	GCTAGC	1 cut(s)	550
NlaIII	CATG	7 cut(s)	18, 355, 565, 677, 977, 1163, 1295
NlaIV	GGNNCC	1 cut(s)	122
NmuCI	GTSAC	2 cut(s)	832, 1320
NspI	RCATGY	1 cut(s)	355
PceI	AGGCCT	1 cut(s)	298
PctI	GAATGC	1 cut(s)	1370
PfeI	GAWTC	2 cut(s)	689, 1121
PinAI	ACCGGT	1 cut(s)	1139
PkrI	GCNGC	5 cut(s)	61, 1013, 1035, 1224, 1311
PleI	GAGTC	5 cut(s)	424, 795, 910, 1214, 1234
PpsI	GAGTC	5 cut(s)	424, 795, 910, 1214, 1234
Psp124BI	GAGCTC	1 cut(s)	172
Psp6I	CCWGG	2 cut(s)	244, 440
PspFI	CCCAGC	2 cut(s)	546, 888
PspGI	CCWGG	2 cut(s)	244, 440
PspN4I	GGNNCC	1 cut(s)	122
PspPI	GGNCC	3 cut(s)	242, 287, 1351
PsrI	GAACNNNNNNTAC	2 cut(s)	689, 721
PsuI	RGATCY	1 cut(s)	653
RsaI	GTAC	3 cut(s)	12, 698, 1329
RsaNI	GTAC	3 cut(s)	11, 697, 1328
RseI	CAYNNNNRTG	1 cut(s)	29
SacI	GAGCTC	1 cut(s)	172
SaqAI	TTAA	5 cut(s)	318, 596, 944, 1080, 1335
SatI	GCNGC	5 cut(s)	60, 1012, 1034, 1223, 1310
Sau3AI	GATC	1 cut(s)	653
Sau96I	GGNCC	3 cut(s)	242, 287, 1351
SchI	GAGTC	5 cut(s)	425, 796, 911, 1215, 1234
ScrFI	CCNGG	4 cut(s)	94, 102, 246, 442
SduI	GDGCHC	1 cut(s)	172
SfaNI	GCATC	1 cut(s)	1295
SfiI	GGCCNNNNNGGCC	1 cut(s)	295
SmiMI	CAYNNNNRTG	1 cut(s)	29
SmlI	CTYRAG	1 cut(s)	1242
SmoI	CTYRAG	1 cut(s)	1242
SseBI	AGGCCT	1 cut(s)	298
SsiI	CCGC	2 cut(s)	405, 1358
SspI	AATATT	1 cut(s)	746
SspMI	CTAG	3 cut(s)	300, 551, 626
SstI	GAGCTC	1 cut(s)	172
StuI	AGGCCT	1 cut(s)	298
StyD4I	CCNGG	4 cut(s)	92, 100, 244, 440
StyI	CCWWGG	2 cut(s)	14, 777
TaaI	ACNGT	6 cut(s)	148, 934, 1018, 1109, 1195, 1332
TaiI	ACGT	1 cut(s)	698
TaqI	TCGA	2 cut(s)	905, 1147
TatI	WGTACW	1 cut(s)	1327
TfiI	GAWTC	2 cut(s)	689, 1121
Tru1I	TTAA	5 cut(s)	318, 596, 944, 1080, 1335
Tru9I	TTAA	5 cut(s)	318, 596, 944, 1080, 1335
TscAI	CASTG	3 cut(s)	1021, 1114, 1198
TseFI	GTSAC	2 cut(s)	832, 1320
TseI	GCWGC	5 cut(s)	59, 1011, 1033, 1222, 1309
Tsp45I	GTSAC	2 cut(s)	832, 1320
TspDTI	ATGAA	4 cut(s)	942, 962, 1148, 1308
TspRI	CASTG	3 cut(s)	1021, 1114, 1198
XapI	RAATTY	2 cut(s)	479, 812
XceI	RCATGY	1 cut(s)	355
XspI	CTAG	3 cut(s)	300, 551, 626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.