Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001027

Physical Location & Seq

Genomic Coordinates Reverse (-)

52376153 .. 52379343

Gene Structure 3191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00370710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGGCTTTGGTTTTGCTACAAATTACAGAAGCTTTCCCTCTTTCTGGACTAGATAGAATTACCCTGTTGCCGGGTCAACCCCAAGTCGGGTTCCAGCACTATTCGGGTTATGTTACCGTTGATGAGAAAAAACAAAGAGCTCTGTTTTACTACTTTGCTGAAGCTGAAATTGAACCAGCTTCAAAGCCTCTTGTTCTCTGGCTCAATGGAGGGCCCGGTTGTTCTTCTCTGGGAGTTGGAGCATTTTCTGAAAATGGGCCATTTAGGCCTAGTGGAGAGGTATTGGTTAAAAACGAATATAGTTGGAATAGAGAAGCAAACATGCTCTATTTGGAGACACCAATTGGAGTTGGGTTCTCTTATTCAACTGATACCGCTTCTTATCAGTCTGTAAATGACCATATTACAGGCATGGACAATCTGATGTTCTTACAAAAGTGGCTGGACAAATTCCCTCAATATAGAAACAGAAGCTTGTTTATTACAGGAGAGAGCTATGCTGGTCATTATGTTCCCCAGCTAGCAGAACTCATGCTCCAATCCAACAAGGAGTATCATTTCAATTTAAAAGGAATTGCTTTGGGTAATCCAGTCCTAGAATATGCTACTGACTTCAATTCAAGATCCGAGTTCTTTTGGTCTCATGGATTGATATCAGATTCAACGTACAAAATGTTCACTTCAGTCTGTAACTATTCAAGATATGTGAGTGAATATTATAGAGGCTCGGTTTCACCAATTTGTTCCAAGGTGATGAGTCAAGTCAGCAGAGAAACCAGTAAATTTGTTGACAAATATGATGTCACTCTTGATGTTTGTATATCATCTGTGTTCTCCCAATCCAAAGTCCTCAGTCCCCAGCAAGTTACTGAGTCAATAGATGTATGCGTGGAAGATGAAACAGTAAACTATTTAAACAGGCTGGATGTGCAGAAGGCACTTCATGCTCGCCTTGTTGGTGTTCGGAAATGGGCAGTTTGCAGCACTGTATTGGATTATGAGCTGCTGGATTTGGAGATACCAACAATCACAATTGTAGGCAAACTCATTAAGGCAGGAATATCAGTCTTGGTTTACAGTGGCGACCAAGATTCTGTTATTCCATTGACCGGTAGTCGAACATTAGTTCATGGACTTGCAGAGGAACTAAAACTAAATACCACCGTTCCTTATAGAGTCTGGTTTGAGGGGCAGCAGGTTGGTGGGTGGACTCAAGTTTATGGTAATATGCTTTCCTTCGCCACTATTAGAGGAGCATCGCATGAAGCACCATTCTCACAGCCTGAGAGGTCACTTGTACTGTTTAAATCATTTCTGGAGGGGCGACCGCTACCAGAAGCATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009505 GO:0009506 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030054 GO:0030163 GO:0030312 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0051603 GO:0055044 GO:0070008 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

448

Amino Acids

50.26

Weight (kDa)

5.4

Isoelectric Point (pI)

39.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	24 - 441	1.5e-126	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28110 AT1G28110 AT2G33530
fragaria_vesca	FvH4_4g22840 FvH4_4g22840 FvH4_4g22840 FvH4_4g22840 FvH4_4g22840 FvH4_5g09210 FvH4_5g09210 FvH4_5g09210 FvH4_5g09210
malus_domestica	MD06G1132500.v1.1 MD08G1237600.v1.1 MD08G1237700.v1.1 MD08G1237800.v1.1 MD08G1238200.v1.1 MD08G1238400.v1.1 MD13G1129200.v1.1 MD14G1148900.v1.1 MD16G1129200.v1.1
prunus_persica	Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.5G143500_v2.0.a1 Prupe.7G030500_v2.0.a1 Prupe.7G030500_v2.0.a1
pyrus_communis	pycom06g12410 pycom08g20620 pycom08g20640 pycom08g20650 pycom08g20670 pycom13g11220 pycom14g12370 pycom16g10950
rosa_chinensis	RchiOBHm_Chr4g0429071 RchiOBHm_Chr7g0188951
rosa_laevigata	RLG00000004647 RLG00000007099
rosa_multiflora	Rmu_co8506825.1_g000001 Rmu_sc0001753.1_g000029 Rmu_sc0008629.1_g000021 Rmu_ssc0000113.1_g000005
rosa_roxburghii	Rroxscaffold_3G00265910 Rroxscaffold_5G00370710
rosa_rugosa	Rorug04G0232700 Rorug04G0232800 Rorug04G0232900 Rorug04G0232900 Rorug06G0495100
rosa_samantha	Rh4AG288500 Rh4BG294700 Rh4CG310200 Rh4DG291600 Rh7BG101900 Rh7CG103200
rosa_wichuraiana	Rw4G025010 Rw7G008600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1186
AciI	CCGC	2 cut(s)	375, 1328
AclWI	GGATC	1 cut(s)	618
AcsI	RAATTY	2 cut(s)	449, 782
AcuI	CTGAAG	2 cut(s)	180, 666
AfaI	GTAC	2 cut(s)	668, 1299
AfiI	CCNNNNNNNGG	5 cut(s)	44, 70, 86, 87, 1109
AgeI	ACCGGT	1 cut(s)	1109
AgsI	TTSAA	8 cut(s)	173, 183, 366, 562, 616, 621, 663, 699
AhdI	GACNNNNNGTC	1 cut(s)	1113
AloI	GAACNNNNNNTCC	2 cut(s)	519, 551
AluBI	AGCT	8 cut(s)	32, 140, 164, 179, 474, 495, 520, 1003
AluI	AGCT	8 cut(s)	32, 140, 164, 179, 474, 495, 520, 1003
Alw21I	GWGCWC	1 cut(s)	142
Alw26I	GTCTC	2 cut(s)	329, 645
AlwI	GGATC	1 cut(s)	618
AoxI	GGCC	3 cut(s)	212, 257, 266
ApaI	GGGCCC	1 cut(s)	216
ApeKI	GCWGC	3 cut(s)	981, 1003, 1192
ApoI	RAATTY	2 cut(s)	449, 782
ArsI	GACNNNNNNTTYG	2 cut(s)	786, 818
AsiGI	ACCGGT	1 cut(s)	1109
AspS9I	GGNCC	3 cut(s)	212, 213, 257
AsuC2I	CCSGG	2 cut(s)	72, 216
AsuHPI	GGTGA	2 cut(s)	726, 763
AsuNHI	GCTAGC	1 cut(s)	520
BaeGI	GKGCMC	1 cut(s)	216
BanII	GRGCYC	2 cut(s)	142, 216
Bbv12I	GWGCWC	1 cut(s)	142
BbvI	GCAGC	3 cut(s)	990, 993, 1204
BcnI	CCSGG	2 cut(s)	72, 216
BcoDI	GTCTC	2 cut(s)	329, 645
BfaI	CTAG	4 cut(s)	50, 270, 521, 596
BfuAI	ACCTGC	1 cut(s)	1186
BglI	GCCNNNNNGGC	1 cut(s)	265
BisI	GCNGC	3 cut(s)	982, 1004, 1193
BlsI	GCNGC	3 cut(s)	983, 1005, 1194
Bme1390I	CCNGG	2 cut(s)	72, 216
BmeRI	GACNNNNNGTC	1 cut(s)	1113
BmgT120I	GGNCC	3 cut(s)	212, 213, 257
BmiI	GGNNCC	2 cut(s)	92, 214
BmrFI	CCNGG	2 cut(s)	72, 216
BmsI	GCATC	1 cut(s)	1265
BmtI	GCTAGC	1 cut(s)	524
BpmI	CTGGAG	1 cut(s)	1337
BpuEI	CTTGAG	1 cut(s)	1197
BpuMI	CCSGG	2 cut(s)	72, 216
BsaBI	GATNNNNATC	1 cut(s)	652
BsaI	GGTCTC	1 cut(s)	645
BsaJI	CCNNGG	1 cut(s)	747
BsaWI	WCCGGW	1 cut(s)	1109
BsaXI	ACNNNNNCTCC	2 cut(s)	519, 549
Bsc4I	CCNNNNNNNGG	5 cut(s)	44, 70, 86, 87, 1109
Bse118I	RCCGGY	1 cut(s)	1109
Bse1I	ACTGG	2 cut(s)	590, 777
Bse8I	GATNNNNATC	1 cut(s)	652
BseDI	CCNNGG	1 cut(s)	747
BseGI	GGATG	1 cut(s)	931
BseJI	GATNNNNATC	1 cut(s)	652
BseLI	CCNNNNNNNGG	5 cut(s)	44, 70, 86, 87, 1109
BseMII	CTCAG	3 cut(s)	861, 865, 1275
BseNI	ACTGG	2 cut(s)	590, 777
BseRI	GAGGAG	1 cut(s)	1266
BseSI	GKGCMC	1 cut(s)	216
BseXI	GCAGC	3 cut(s)	990, 993, 1204
BseYI	CCCAGC	2 cut(s)	516, 858
BsgI	GTGCAG	1 cut(s)	950
Bsh1285I	CGRYCG	1 cut(s)	1328
BshFI	GGCC	3 cut(s)	214, 259, 268
BshTI	ACCGGT	1 cut(s)	1109
BsiEI	CGRYCG	1 cut(s)	1328
BsiHKAI	GWGCWC	1 cut(s)	142
BsiSI	CCGG	3 cut(s)	71, 216, 1110
BslFI	GGGAC	1 cut(s)	840
BslI	CCNNNNNNNGG	5 cut(s)	44, 70, 86, 87, 1109
BsmAI	GTCTC	2 cut(s)	329, 645
BsmFI	GGGAC	1 cut(s)	840
BsmI	GAATGC	1 cut(s)	1340
BsnI	GGCC	3 cut(s)	214, 259, 268
Bso31I	GGTCTC	1 cut(s)	645
Bsp120I	GGGCCC	1 cut(s)	212
Bsp1286I	GDGCHC	2 cut(s)	142, 216
Bsp143I	GATC	1 cut(s)	623
BspACI	CCGC	2 cut(s)	375, 1328
BspANI	GGCC	3 cut(s)	214, 259, 268
BspCNI	CTCAG	3 cut(s)	862, 864, 1276
BspLI	GGNNCC	2 cut(s)	92, 214
BspMI	ACCTGC	1 cut(s)	1186
BspOI	GCTAGC	1 cut(s)	524
BspPI	GGATC	1 cut(s)	618
BspTNI	GGTCTC	1 cut(s)	645
BsrFI	RCCGGY	1 cut(s)	1109
BsrI	ACTGG	2 cut(s)	590, 777
BssAI	RCCGGY	1 cut(s)	1109
BssECI	CCNNGG	1 cut(s)	747
BssMI	GATC	1 cut(s)	623
BssT1I	CCWWGG	1 cut(s)	747
Bst4CI	ACNGT	6 cut(s)	118, 904, 988, 1079, 1165, 1302
BstAPI	GCANNNNNTGC	1 cut(s)	944
BstC8I	GCNNGC	2 cut(s)	522, 949
BstDEI	CTNAG	3 cut(s)	851, 870, 1284
BstF5I	GGATG	1 cut(s)	931
BstKTI	GATC	1 cut(s)	626
BstMAI	GTCTC	2 cut(s)	329, 645
BstMBI	GATC	1 cut(s)	623
BstMCI	CGRYCG	1 cut(s)	1328
BstMWI	GCNNNNNNNGC	3 cut(s)	265, 928, 944
BstNSI	RCATGY	1 cut(s)	325
BstSCI	CCNGG	2 cut(s)	70, 214
BstSLI	GKGCMC	1 cut(s)	216
BstV1I	GCAGC	3 cut(s)	990, 993, 1204
BstX2I	RGATCY	1 cut(s)	623
BstYI	RGATCY	1 cut(s)	623
BsuRI	GGCC	3 cut(s)	214, 259, 268
BtgZI	GCGATG	1 cut(s)	1242
BtsCI	GGATG	1 cut(s)	931
BtsIMutI	CAGTG	2 cut(s)	984, 1084
BveI	ACCTGC	1 cut(s)	1186
Cac8I	GCNNGC	2 cut(s)	522, 949
Cfr10I	RCCGGY	1 cut(s)	1109
Cfr13I	GGNCC	3 cut(s)	212, 213, 257
Csp6I	GTAC	2 cut(s)	667, 1298
CspAI	ACCGGT	1 cut(s)	1109
CviAII	CATG	7 cut(s)	322, 412, 532, 644, 944, 1130, 1262
CviQI	GTAC	2 cut(s)	667, 1298
DdeI	CTNAG	3 cut(s)	851, 870, 1284
DpnI	GATC	1 cut(s)	625
DpnII	GATC	1 cut(s)	623
DraI	TTTAAA	3 cut(s)	567, 915, 1306
DriI	GACNNNNNGTC	1 cut(s)	1113
Eam1105I	GACNNNNNGTC	1 cut(s)	1113
Ecl136II	GAGCTC	1 cut(s)	140
Eco130I	CCWWGG	1 cut(s)	747
Eco147I	AGGCCT	1 cut(s)	268
Eco24I	GRGCYC	2 cut(s)	142, 216
Eco31I	GGTCTC	1 cut(s)	645
Eco32I	GATATC	1 cut(s)	654
Eco53kI	GAGCTC	1 cut(s)	140
Eco57I	CTGAAG	2 cut(s)	180, 666
EcoICRI	GAGCTC	1 cut(s)	140
EcoO109I	RGGNCCY	1 cut(s)	212
EcoRV	GATATC	1 cut(s)	654
EcoT14I	CCWWGG	1 cut(s)	747
EcoT38I	GRGCYC	2 cut(s)	142, 216
ErhI	CCWWGG	1 cut(s)	747
FaeI	CATG	7 cut(s)	325, 415, 535, 647, 947, 1133, 1265
FaqI	GGGAC	1 cut(s)	840
FatI	CATG	7 cut(s)	321, 411, 531, 643, 943, 1129, 1261
Fnu4HI	GCNGC	3 cut(s)	982, 1004, 1193
FokI	GGATG	1 cut(s)	938
FriOI	GRGCYC	2 cut(s)	142, 216
Fsp4HI	GCNGC	3 cut(s)	982, 1004, 1193
FspBI	CTAG	4 cut(s)	50, 270, 521, 596
GluI	GCNGC	3 cut(s)	982, 1004, 1193
GsaI	CCCAGC	2 cut(s)	520, 862
GsuI	CTGGAG	1 cut(s)	1337
HaeIII	GGCC	3 cut(s)	214, 259, 268
HapII	CCGG	3 cut(s)	71, 216, 1110
Hin1II	CATG	7 cut(s)	325, 415, 535, 647, 947, 1133, 1265
HincII	GTYRAC	2 cut(s)	77, 790
HindII	GTYRAC	2 cut(s)	77, 790
HindIII	AAGCTT	2 cut(s)	30, 472
HinfI	GANTC	6 cut(s)	659, 757, 872, 1091, 1176, 1210
HpaII	CCGG	3 cut(s)	71, 216, 1110
HphI	GGTGA	2 cut(s)	726, 763
Hpy166II	GTNNAC	6 cut(s)	77, 678, 790, 907, 1075, 1209
Hpy188I	TCNGA	6 cut(s)	250, 423, 628, 658, 966, 1346
Hpy188III	TCNNGA	5 cut(s)	45, 621, 699, 809, 1316
Hpy8I	GTNNAC	6 cut(s)	77, 678, 790, 907, 1075, 1209
HpyAV	CCTTC	2 cut(s)	928, 1246
HpyCH4III	ACNGT	6 cut(s)	118, 904, 988, 1079, 1165, 1302
HpyCH4IV	ACGT	1 cut(s)	665
HpyCH4V	TGCA	3 cut(s)	931, 981, 1139
HpyF10VI	GCNNNNNNNGC	3 cut(s)	265, 928, 944
HpyF3I	CTNAG	3 cut(s)	851, 870, 1284
HpySE526I	ACGT	1 cut(s)	665
Hsp92II	CATG	7 cut(s)	325, 415, 535, 647, 947, 1133, 1265
Kzo9I	GATC	1 cut(s)	623
LmnI	GCTCC	3 cut(s)	239, 540, 1253
Lsp1109I	GCAGC	3 cut(s)	990, 993, 1204
LweI	GCATC	1 cut(s)	1265
MaeI	CTAG	4 cut(s)	50, 270, 521, 596
MaeII	ACGT	1 cut(s)	665
MaeIII	GTNAC	5 cut(s)	112, 689, 802, 865, 1290
MalI	GATC	1 cut(s)	625
MboI	GATC	1 cut(s)	623
MboII	GAAGA	2 cut(s)	216, 905
MfeI	CAATTG	2 cut(s)	342, 1032
MflI	RGATCY	1 cut(s)	623
MhlI	GDGCHC	2 cut(s)	142, 216
MlyI	GAGTC	4 cut(s)	766, 881, 1185, 1204
MmeI	TCCRAC	3 cut(s)	217, 284, 567
MseI	TTAA	5 cut(s)	288, 566, 914, 1050, 1305
MspI	CCGG	3 cut(s)	71, 216, 1110
MspR9I	CCNGG	2 cut(s)	72, 216
MunI	CAATTG	2 cut(s)	342, 1032
Mva1269I	GAATGC	1 cut(s)	1340
MwoI	GCNNNNNNNGC	3 cut(s)	265, 928, 944
NciI	CCSGG	2 cut(s)	72, 216
NdeII	GATC	1 cut(s)	623
NheI	GCTAGC	1 cut(s)	520
NlaIII	CATG	7 cut(s)	325, 415, 535, 647, 947, 1133, 1265
NlaIV	GGNNCC	2 cut(s)	92, 214
NmuCI	GTSAC	2 cut(s)	802, 1290
NspI	RCATGY	1 cut(s)	325
PceI	AGGCCT	1 cut(s)	268
PctI	GAATGC	1 cut(s)	1340
PfeI	GAWTC	2 cut(s)	659, 1091
PinAI	ACCGGT	1 cut(s)	1109
PkrI	GCNGC	3 cut(s)	983, 1005, 1194
PleI	GAGTC	4 cut(s)	765, 880, 1184, 1204
PpsI	GAGTC	4 cut(s)	765, 880, 1184, 1204
Psp124BI	GAGCTC	1 cut(s)	142
PspFI	CCCAGC	2 cut(s)	516, 858
PspN4I	GGNNCC	2 cut(s)	92, 214
PspOMI	GGGCCC	1 cut(s)	212
PspPI	GGNCC	3 cut(s)	212, 213, 257
PsrI	GAACNNNNNNTAC	2 cut(s)	659, 691
PsuI	RGATCY	1 cut(s)	623
RsaI	GTAC	2 cut(s)	668, 1299
RsaNI	GTAC	2 cut(s)	667, 1298
SacI	GAGCTC	1 cut(s)	142
SaqAI	TTAA	5 cut(s)	288, 566, 914, 1050, 1305
SatI	GCNGC	3 cut(s)	982, 1004, 1193
Sau3AI	GATC	1 cut(s)	623
Sau96I	GGNCC	3 cut(s)	212, 213, 257
SchI	GAGTC	4 cut(s)	766, 881, 1185, 1204
ScrFI	CCNGG	2 cut(s)	72, 216
SduI	GDGCHC	2 cut(s)	142, 216
SfaNI	GCATC	1 cut(s)	1265
SfiI	GGCCNNNNNGGCC	1 cut(s)	265
SmlI	CTYRAG	1 cut(s)	1212
SmoI	CTYRAG	1 cut(s)	1212
SseBI	AGGCCT	1 cut(s)	268
SsiI	CCGC	2 cut(s)	375, 1328
SspI	AATATT	1 cut(s)	716
SspMI	CTAG	4 cut(s)	50, 270, 521, 596
SstI	GAGCTC	1 cut(s)	142
StuI	AGGCCT	1 cut(s)	268
StyD4I	CCNGG	2 cut(s)	70, 214
StyI	CCWWGG	1 cut(s)	747
TaaI	ACNGT	6 cut(s)	118, 904, 988, 1079, 1165, 1302
TaiI	ACGT	1 cut(s)	668
TaqI	TCGA	1 cut(s)	1117
TatI	WGTACW	1 cut(s)	1297
TfiI	GAWTC	2 cut(s)	659, 1091
Tru1I	TTAA	5 cut(s)	288, 566, 914, 1050, 1305
Tru9I	TTAA	5 cut(s)	288, 566, 914, 1050, 1305
TscAI	CASTG	2 cut(s)	991, 1084
TseFI	GTSAC	2 cut(s)	802, 1290
TseI	GCWGC	3 cut(s)	981, 1003, 1192
Tsp45I	GTSAC	2 cut(s)	802, 1290
TspDTI	ATGAA	4 cut(s)	912, 932, 1118, 1278
TspRI	CASTG	2 cut(s)	991, 1084
XapI	RAATTY	2 cut(s)	449, 782
XceI	RCATGY	1 cut(s)	325
XspI	CTAG	4 cut(s)	50, 270, 521, 596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.