Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0001027

Physical Location & Seq

Genomic Coordinates Forward (+)

30544090 .. 30546573

Gene Structure 2484 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1238400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGATGCAGCCTCCACGAGGGAGTATCGTCGTCGCCGCCGCAGTCTTTGCAACTGTCATCCAAGTGTTTTCCACGGCAAACTCCCTCCAAGAAGCTGATAAAATCACAAGGTTGCCAGGTCAACCACAAGTCAGCTTCCAGCAATATGCAGGATATGTAACTGTGGATGAAAAGCAAGAGAGATCTCTTTTTTACTACTTTGTTGAAGCACAAATTGATCCTGCTTCCAAGCCTCTTGTTCTTTGGCTCAATGGAGGTCCGGGTTGTTCATCTATTGGAGTTAGAGCTTTCAACGAGAACGGACCTTTTCAACCAAGCGGAGACATTTTACTCAAGAACGATTTTAGTTGGAATAGAGAAGCAAATATGCTATACTTGGAGTCACCAGCAGGAATTGGCAATCCTCTTTTCGAATTCAATTCTGATATCAACGCACCAGCAGAATACTGGTGGTCACATGGATTAATATCGGATGCGACCTTCAAAAATTTGACTTCAGTCTGCAACTATTCTGAAATTATTAGACAGGCGGTAATTCGTGGTGGTCCACTTATCCCTGCTTGTGATGCAGTAGCGAACCAAGTTGAAAGAGAAGTCCCTAGACATTTGATCAACCAATATGACGTTACTCTCGATGTCTGTTTATCATCCGTTGAAGCTCAATCTTTCCAACTGGTGTATGACATGAAAAACCTGGAAATACCGATGCTTCCAGTTTTAGGTGACCTTGTCGAGTCTGGAATTCGGGTTTTAATTTACAGTGGAGATCAAGATTCTGTTATTCCACTAACGAGTACACGGACACTGGTGAACGGATTGGCAAAGGACTTGGGGCTACAAACGAATGTGCCTTACAGAGTCTGGTTTGAAGAAAAACATGTTGCTGGATGGACACAAGTATACAGTGACGCTTTATCTTACGCTACCATAAGAGGAGCAGGCCATGAAGCTCCAATTTCACAGCCAGAGAGATCATTACATCTATTTACTTCATTTCTGACAGGAATGCCATTGCCAAAAGCCTTAAGTACTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

346

Amino Acids

38.07

Weight (kDa)

4.87

Isoelectric Point (pI)

37.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	39 - 133	3.2e-37	Serine carboxypeptidase
Peptidase_S10	PF00450	132 - 219	4.9e-06	Serine carboxypeptidase
Peptidase_S10	PF00450	230 - 334	8.1e-23	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28110 AT1G28110 AT2G33530
fragaria_vesca	FvH4_4g22840 FvH4_4g22840 FvH4_4g22840 FvH4_4g22840 FvH4_4g22840 FvH4_5g09210 FvH4_5g09210 FvH4_5g09210 FvH4_5g09210
malus_domestica	MD06G1132500.v1.1 MD08G1237600.v1.1 MD08G1237700.v1.1 MD08G1237800.v1.1 MD08G1238200.v1.1 MD08G1238400.v1.1 MD13G1129200.v1.1 MD14G1148900.v1.1 MD16G1129200.v1.1
prunus_persica	Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.5G143500_v2.0.a1 Prupe.7G030500_v2.0.a1 Prupe.7G030500_v2.0.a1
pyrus_communis	pycom06g12410 pycom08g20620 pycom08g20640 pycom08g20650 pycom08g20670 pycom13g11220 pycom14g12370 pycom16g10950
rosa_chinensis	RchiOBHm_Chr4g0429071 RchiOBHm_Chr7g0188951
rosa_laevigata	RLG00000004647 RLG00000007099
rosa_multiflora	Rmu_co8506825.1_g000001 Rmu_sc0001753.1_g000029 Rmu_sc0008629.1_g000021 Rmu_ssc0000113.1_g000005
rosa_roxburghii	Rroxscaffold_3G00265910 Rroxscaffold_5G00370710
rosa_rugosa	Rorug04G0232700 Rorug04G0232800 Rorug04G0232900 Rorug04G0232900 Rorug06G0495100
rosa_samantha	Rh4AG288500 Rh4BG294700 Rh4CG310200 Rh4DG291600 Rh7BG101900 Rh7CG103200
rosa_wichuraiana	Rw4G025010 Rw7G008600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	900
AciI	CCGC	4 cut(s)	36, 39, 318, 530
AclWI	GGATC	1 cut(s)	212
AcsI	RAATTY	3 cut(s)	413, 487, 741
AcuI	CTGAAG	1 cut(s)	480
AfaI	GTAC	2 cut(s)	796, 1030
AfiI	CCNNNNNNNGG	2 cut(s)	17, 719
AflII	CTTAAG	1 cut(s)	1024
AflIII	ACRYGT	1 cut(s)	877
AgsI	TTSAA	8 cut(s)	206, 292, 311, 418, 484, 587, 656, 869
AjnI	CCWGG	2 cut(s)	115, 693
AluBI	AGCT	5 cut(s)	95, 135, 287, 659, 950
AluI	AGCT	5 cut(s)	95, 135, 287, 659, 950
Alw26I	GTCTC	1 cut(s)	315
AlwI	GGATC	1 cut(s)	212
AlwNI	CAGNNNCTG	1 cut(s)	861
AoxI	GGCC	1 cut(s)	940
ApeKI	GCWGC	1 cut(s)	7
ApoI	RAATTY	3 cut(s)	413, 487, 741
AseI	ATTAAT	1 cut(s)	464
AspS9I	GGNCC	3 cut(s)	257, 302, 545
AsuC2I	CCSGG	1 cut(s)	261
AsuHPI	GGTGA	3 cut(s)	375, 734, 820
AsuII	TTCGAA	1 cut(s)	411
AvaII	GGWCC	3 cut(s)	257, 302, 545
BauI	CACGAG	1 cut(s)	15
BbvI	GCAGC	1 cut(s)	19
BccI	CCATC	1 cut(s)	882
BceAI	ACGGC	1 cut(s)	90
BciT130I	CCWGG	2 cut(s)	117, 695
BclI	TGATCA	1 cut(s)	609
BcnI	CCSGG	1 cut(s)	261
BcoDI	GTCTC	1 cut(s)	315
BfaI	CTAG	1 cut(s)	600
BfrI	CTTAAG	1 cut(s)	1024
BglII	AGATCT	1 cut(s)	182
BisI	GCNGC	3 cut(s)	8, 36, 39
BlsI	GCNGC	3 cut(s)	9, 37, 40
BmcAI	AGTACT	1 cut(s)	1030
Bme1390I	CCNGG	3 cut(s)	117, 261, 695
Bme18I	GGWCC	3 cut(s)	257, 302, 545
BmgT120I	GGNCC	3 cut(s)	257, 302, 545
BmrFI	CCNGG	3 cut(s)	117, 261, 695
BmsI	GCATC	3 cut(s)	463, 556, 696
BoxI	GACNNNNGTC	1 cut(s)	497
Bpu14I	TTCGAA	1 cut(s)	411
BpuEI	CTTGAG	1 cut(s)	317
BpuMI	CCSGG	1 cut(s)	261
BsaBI	GATNNNNATC	1 cut(s)	466
BsaJI	CCNNGG	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 719
Bse1I	ACTGG	4 cut(s)	452, 678, 713, 810
Bse3DI	GCAATG	1 cut(s)	1010
Bse8I	GATNNNNATC	1 cut(s)	466
BseBI	CCWGG	2 cut(s)	117, 695
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	5 cut(s)	57, 172, 478, 647, 893
BseJI	GATNNNNATC	1 cut(s)	466
BseLI	CCNNNNNNNGG	2 cut(s)	17, 719
BseMI	GCAATG	1 cut(s)	1010
BseNI	ACTGG	4 cut(s)	452, 678, 713, 810
BseRI	GAGGAG	1 cut(s)	948
BseXI	GCAGC	1 cut(s)	19
BshFI	GGCC	1 cut(s)	942
BsiSI	CCGG	1 cut(s)	260
BslFI	GGGAC	1 cut(s)	581
BslI	CCNNNNNNNGG	2 cut(s)	17, 719
BsmAI	GTCTC	1 cut(s)	315
BsmFI	GGGAC	1 cut(s)	581
BsmI	GAATGC	1 cut(s)	1011
BsnI	GGCC	1 cut(s)	942
Bsp119I	TTCGAA	1 cut(s)	411
Bsp143I	GATC	5 cut(s)	182, 217, 609, 766, 971
BspACI	CCGC	4 cut(s)	36, 39, 318, 530
BspANI	GGCC	1 cut(s)	942
BspPI	GGATC	1 cut(s)	212
BspT104I	TTCGAA	1 cut(s)	411
BspTI	CTTAAG	1 cut(s)	1024
BsrDI	GCAATG	1 cut(s)	1010
BsrI	ACTGG	4 cut(s)	452, 678, 713, 810
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	5 cut(s)	182, 217, 609, 766, 971
BssNAI	GTATAC	1 cut(s)	901
BssSI	CACGAG	1 cut(s)	15
Bst1107I	GTATAC	1 cut(s)	901
Bst2BI	CACGAG	1 cut(s)	15
Bst2UI	CCWGG	2 cut(s)	117, 695
Bst4CI	ACNGT	4 cut(s)	55, 163, 761, 905
BstAFI	CTTAAG	1 cut(s)	1024
BstAPI	GCANNNNNTGC	1 cut(s)	47
BstBI	TTCGAA	1 cut(s)	411
BstC8I	GCNNGC	1 cut(s)	940
BstDSI	CCRYGG	1 cut(s)	72
BstEII	GGTNACC	1 cut(s)	722
BstENI	CCTNNNNNAGG	1 cut(s)	15
BstF5I	GGATG	5 cut(s)	57, 172, 478, 647, 893
BstKTI	GATC	5 cut(s)	185, 220, 612, 769, 974
BstMAI	GTCTC	1 cut(s)	315
BstMBI	GATC	5 cut(s)	182, 217, 609, 766, 971
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 566
BstNI	CCWGG	2 cut(s)	117, 695
BstNSI	RCATGY	1 cut(s)	881
BstPAI	GACNNNNGTC	1 cut(s)	497
BstPI	GGTNACC	1 cut(s)	722
BstSCI	CCNGG	3 cut(s)	115, 259, 693
BstV1I	GCAGC	1 cut(s)	19
BstX2I	RGATCY	1 cut(s)	182
BstYI	RGATCY	1 cut(s)	182
BstZ17I	GTATAC	1 cut(s)	901
BsuRI	GGCC	1 cut(s)	942
BtgI	CCRYGG	1 cut(s)	72
BtsCI	GGATG	5 cut(s)	57, 172, 478, 647, 893
BtsIMutI	CAGTG	3 cut(s)	766, 803, 910
Cac8I	GCNNGC	1 cut(s)	940
CaiI	CAGNNNCTG	1 cut(s)	861
Cfr13I	GGNCC	3 cut(s)	257, 302, 545
CseI	GACGC	1 cut(s)	917
Csp6I	GTAC	2 cut(s)	795, 1029
CviAII	CATG	4 cut(s)	458, 685, 878, 944
CviQI	GTAC	2 cut(s)	795, 1029
DpnI	GATC	5 cut(s)	184, 219, 611, 768, 973
DpnII	GATC	5 cut(s)	182, 217, 609, 766, 971
Eco32I	GATATC	1 cut(s)	427
Eco47I	GGWCC	3 cut(s)	257, 302, 545
Eco57I	CTGAAG	1 cut(s)	480
Eco91I	GGTNACC	1 cut(s)	722
EcoNI	CCTNNNNNAGG	1 cut(s)	15
EcoO65I	GGTNACC	1 cut(s)	722
EcoRI	GAATTC	2 cut(s)	413, 741
EcoRII	CCWGG	2 cut(s)	115, 693
EcoRV	GATATC	1 cut(s)	427
FaeI	CATG	4 cut(s)	461, 688, 881, 947
FaqI	GGGAC	1 cut(s)	581
FatI	CATG	4 cut(s)	457, 684, 877, 943
FbaI	TGATCA	1 cut(s)	609
FblI	GTMKAC	1 cut(s)	900
Fnu4HI	GCNGC	3 cut(s)	8, 36, 39
FokI	GGATG	5 cut(s)	44, 179, 485, 634, 900
Fsp4HI	GCNGC	3 cut(s)	8, 36, 39
FspBI	CTAG	1 cut(s)	600
GluI	GCNGC	3 cut(s)	8, 36, 39
HaeIII	GGCC	1 cut(s)	942
HapII	CCGG	1 cut(s)	260
HgaI	GACGC	1 cut(s)	917
Hin1II	CATG	4 cut(s)	461, 688, 881, 947
HincII	GTYRAC	1 cut(s)	122
HindII	GTYRAC	1 cut(s)	122
HinfI	GANTC	4 cut(s)	380, 734, 773, 858
HpaII	CCGG	1 cut(s)	260
HphI	GGTGA	3 cut(s)	375, 734, 820
Hpy166II	GTNNAC	5 cut(s)	122, 548, 797, 811, 901
Hpy188I	TCNGA	4 cut(s)	424, 472, 514, 999
Hpy188III	TCNNGA	4 cut(s)	334, 632, 738, 770
Hpy8I	GTNNAC	5 cut(s)	122, 548, 797, 811, 901
Hpy99I	CGWCG	2 cut(s)	32, 35
HpyAV	CCTTC	1 cut(s)	490
HpyCH4III	ACNGT	4 cut(s)	55, 163, 761, 905
HpyCH4IV	ACGT	1 cut(s)	624
HpyCH4V	TGCA	5 cut(s)	7, 50, 149, 504, 569
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 566
HpySE526I	ACGT	1 cut(s)	624
Hsp92II	CATG	4 cut(s)	461, 688, 881, 947
Ksp22I	TGATCA	1 cut(s)	609
Kzo9I	GATC	5 cut(s)	182, 217, 609, 766, 971
LmnI	GCTCC	2 cut(s)	935, 955
Lsp1109I	GCAGC	1 cut(s)	19
LweI	GCATC	3 cut(s)	463, 556, 696
MaeI	CTAG	1 cut(s)	600
MaeII	ACGT	1 cut(s)	624
MaeIII	GTNAC	6 cut(s)	157, 381, 453, 625, 722, 905
MalI	GATC	5 cut(s)	184, 219, 611, 768, 973
MboI	GATC	5 cut(s)	182, 217, 609, 766, 971
MboII	GAAGA	1 cut(s)	881
MflI	RGATCY	1 cut(s)	182
MlyI	GAGTC	3 cut(s)	389, 743, 867
MmeI	TCCRAC	2 cut(s)	329, 694
MnlI	CCTC	7 cut(s)	11, 21, 95, 243, 248, 414, 926
MseI	TTAA	3 cut(s)	464, 752, 1025
MslI	CAYNNNNRTG	1 cut(s)	62
MspCI	CTTAAG	1 cut(s)	1024
MspI	CCGG	1 cut(s)	260
MspR9I	CCNGG	3 cut(s)	117, 261, 695
Mva1269I	GAATGC	1 cut(s)	1011
MvaI	CCWGG	2 cut(s)	117, 695
MwoI	GCNNNNNNNGC	2 cut(s)	47, 566
NciI	CCSGG	1 cut(s)	261
NdeII	GATC	5 cut(s)	182, 217, 609, 766, 971
NlaIII	CATG	4 cut(s)	461, 688, 881, 947
NmuCI	GTSAC	4 cut(s)	381, 453, 722, 905
NspI	RCATGY	1 cut(s)	881
NspV	TTCGAA	1 cut(s)	411
PciI	ACATGT	1 cut(s)	877
PcsI	WCGNNNNNNNCGW	1 cut(s)	630
PctI	GAATGC	1 cut(s)	1011
PfeI	GAWTC	1 cut(s)	773
PflFI	GACNNNGTC	1 cut(s)	728
PkrI	GCNGC	3 cut(s)	9, 37, 40
PleI	GAGTC	3 cut(s)	388, 742, 866
PpsI	GAGTC	3 cut(s)	388, 742, 866
PscI	ACATGT	1 cut(s)	877
PshAI	GACNNNNGTC	1 cut(s)	497
PshBI	ATTAAT	1 cut(s)	464
Psp6I	CCWGG	2 cut(s)	115, 693
PspEI	GGTNACC	1 cut(s)	722
PspGI	CCWGG	2 cut(s)	115, 693
PspPI	GGNCC	3 cut(s)	257, 302, 545
PstNI	CAGNNNCTG	1 cut(s)	861
PsuI	RGATCY	1 cut(s)	182
PsyI	GACNNNGTC	1 cut(s)	728
RsaI	GTAC	2 cut(s)	796, 1030
RsaNI	GTAC	2 cut(s)	795, 1029
RseI	CAYNNNNRTG	1 cut(s)	62
SaqAI	TTAA	3 cut(s)	464, 752, 1025
SatI	GCNGC	3 cut(s)	8, 36, 39
Sau3AI	GATC	5 cut(s)	182, 217, 609, 766, 971
Sau96I	GGNCC	3 cut(s)	257, 302, 545
ScaI	AGTACT	1 cut(s)	1030
SchI	GAGTC	3 cut(s)	389, 743, 867
ScrFI	CCNGG	3 cut(s)	117, 261, 695
SfaNI	GCATC	3 cut(s)	463, 556, 696
SfuI	TTCGAA	1 cut(s)	411
SinI	GGWCC	3 cut(s)	257, 302, 545
SmiMI	CAYNNNNRTG	1 cut(s)	62
SmlI	CTYRAG	2 cut(s)	332, 1024
SmoI	CTYRAG	2 cut(s)	332, 1024
SsiI	CCGC	4 cut(s)	36, 39, 318, 530
SspMI	CTAG	1 cut(s)	600
StyD4I	CCNGG	3 cut(s)	115, 259, 693
TaaI	ACNGT	4 cut(s)	55, 163, 761, 905
TaiI	ACGT	1 cut(s)	627
TaqI	TCGA	3 cut(s)	411, 633, 732
TatI	WGTACW	2 cut(s)	794, 1028
TauI	GCSGC	2 cut(s)	38, 41
TfiI	GAWTC	1 cut(s)	773
Tru1I	TTAA	3 cut(s)	464, 752, 1025
Tru9I	TTAA	3 cut(s)	464, 752, 1025
TscAI	CASTG	3 cut(s)	766, 810, 910
TseFI	GTSAC	4 cut(s)	381, 453, 722, 905
TseI	GCWGC	1 cut(s)	7
Tsp45I	GTSAC	4 cut(s)	381, 453, 722, 905
TspDTI	ATGAA	5 cut(s)	183, 258, 701, 960, 981
TspGWI	ACGGA	4 cut(s)	315, 640, 814, 828
TspRI	CASTG	3 cut(s)	766, 810, 910
Tth111I	GACNNNGTC	1 cut(s)	728
Vha464I	CTTAAG	1 cut(s)	1024
VpaK11BI	GGWCC	3 cut(s)	257, 302, 545
VspI	ATTAAT	1 cut(s)	464
XagI	CCTNNNNNAGG	1 cut(s)	15
XapI	RAATTY	3 cut(s)	413, 487, 741
XceI	RCATGY	1 cut(s)	881
XcmI	CCANNNNNNNNNTGG	1 cut(s)	444
XmiI	GTMKAC	1 cut(s)	900
XspI	CTAG	1 cut(s)	600
ZrmI	AGTACT	1 cut(s)	1030

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.