Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0001027

Physical Location & Seq

Genomic Coordinates Forward (+)

20374676 .. 20375380

Gene Structure 705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g20670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGAATCAAAACAAGAAGAGAATTCCAATTATATTCCAAACTATTCAAAGATCGAAGAAATGTTCCTTGTGCAGCAATTCTTTTTTGTTTACTGTGCTTCTAACTTTGATTATCCTCTTTTACAGCAGAGTTGTCATCCAGTATGACATGAAAAACCTGGAAACACCGATGCTTCTAGTTTTAGGTGAACTTGTCAAGTCTGGAATTCGGGTTTTAATTTACAGGATCGATCAAGATTCTATTATTTCACTAACGAGTACACGGACACTGGTGAAAGGATTGGCAAAGGACTTGGGGCTACAAACGAATGTGCCTTACAGAGTCTGGTTTGAAGAAAAACAGGTTGCTGGATGGACACAAGTATACAGTGACGCTTTATCTTATGCTACCATAAGAGGAGCAGGCCATGAAGCTCCAATTTCGCAGCCAGAGAGATCATTACTTCTATTTACTTCATTTCTGACAGGAATGCCATTGCCAAAAGCCCGAAGTACTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

167

Amino Acids

18.83

Weight (kDa)

9.8

Isoelectric Point (pI)

34.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	46 - 155	1.4e-20	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28110 AT1G28110 AT2G33530
fragaria_vesca	FvH4_4g22840 FvH4_4g22840 FvH4_4g22840 FvH4_4g22840 FvH4_4g22840 FvH4_5g09210 FvH4_5g09210 FvH4_5g09210 FvH4_5g09210
malus_domestica	MD06G1132500.v1.1 MD08G1237600.v1.1 MD08G1237700.v1.1 MD08G1237800.v1.1 MD08G1238200.v1.1 MD08G1238400.v1.1 MD13G1129200.v1.1 MD14G1148900.v1.1 MD16G1129200.v1.1
prunus_persica	Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.5G143500_v2.0.a1 Prupe.7G030500_v2.0.a1 Prupe.7G030500_v2.0.a1
pyrus_communis	pycom06g12410 pycom08g20620 pycom08g20640 pycom08g20650 pycom08g20670 pycom13g11220 pycom14g12370 pycom16g10950
rosa_chinensis	RchiOBHm_Chr4g0429071 RchiOBHm_Chr7g0188951
rosa_laevigata	RLG00000004647 RLG00000007099
rosa_multiflora	Rmu_co8506825.1_g000001 Rmu_sc0001753.1_g000029 Rmu_sc0008629.1_g000021 Rmu_ssc0000113.1_g000005
rosa_roxburghii	Rroxscaffold_3G00265910 Rroxscaffold_5G00370710
rosa_rugosa	Rorug04G0232700 Rorug04G0232800 Rorug04G0232900 Rorug04G0232900 Rorug06G0495100
rosa_samantha	Rh4AG288500 Rh4BG294700 Rh4CG310200 Rh4DG291600 Rh7BG101900 Rh7CG103200
rosa_wichuraiana	Rw4G025010 Rw7G008600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	363
AclWI	GGATC	1 cut(s)	233
AcsI	RAATTY	2 cut(s)	21, 204
AfaI	GTAC	2 cut(s)	259, 493
AgsI	TTSAA	2 cut(s)	47, 332
AjnI	CCWGG	1 cut(s)	156
AluBI	AGCT	1 cut(s)	413
AluI	AGCT	1 cut(s)	413
AlwI	GGATC	1 cut(s)	233
AlwNI	CAGNNNCTG	1 cut(s)	324
AoxI	GGCC	1 cut(s)	403
ApeKI	GCWGC	2 cut(s)	72, 424
ApoI	RAATTY	2 cut(s)	21, 204
AsuHPI	GGTGA	2 cut(s)	197, 283
BbvI	GCAGC	2 cut(s)	84, 436
BccI	CCATC	1 cut(s)	345
BciT130I	CCWGG	1 cut(s)	158
BfaI	CTAG	1 cut(s)	176
BisI	GCNGC	2 cut(s)	73, 425
BlsI	GCNGC	2 cut(s)	74, 426
BmcAI	AGTACT	1 cut(s)	493
Bme1390I	CCNGG	1 cut(s)	158
BmrFI	CCNGG	1 cut(s)	158
BmsI	GCATC	1 cut(s)	159
Bsa29I	ATCGAT	1 cut(s)	228
Bse1I	ACTGG	2 cut(s)	139, 273
Bse3DI	GCAATG	1 cut(s)	473
BseBI	CCWGG	1 cut(s)	158
BseCI	ATCGAT	1 cut(s)	228
BseGI	GGATG	2 cut(s)	135, 356
BseMI	GCAATG	1 cut(s)	473
BseNI	ACTGG	2 cut(s)	139, 273
BseRI	GAGGAG	1 cut(s)	411
BseXI	GCAGC	2 cut(s)	84, 436
BsgI	GTGCAG	1 cut(s)	91
BshFI	GGCC	1 cut(s)	405
BshVI	ATCGAT	1 cut(s)	228
BsmI	GAATGC	1 cut(s)	474
BsnI	GGCC	1 cut(s)	405
Bsp143I	GATC	4 cut(s)	50, 225, 229, 434
BspANI	GGCC	1 cut(s)	405
BspDI	ATCGAT	1 cut(s)	228
BspPI	GGATC	1 cut(s)	233
BsrDI	GCAATG	1 cut(s)	473
BsrI	ACTGG	2 cut(s)	139, 273
BssMI	GATC	4 cut(s)	50, 225, 229, 434
BssNAI	GTATAC	1 cut(s)	364
Bst1107I	GTATAC	1 cut(s)	364
Bst2UI	CCWGG	1 cut(s)	158
Bst4CI	ACNGT	2 cut(s)	94, 368
Bst6I	CTCTTC	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	403
BstF5I	GGATG	2 cut(s)	135, 356
BstKTI	GATC	4 cut(s)	53, 228, 232, 437
BstMBI	GATC	4 cut(s)	50, 225, 229, 434
BstNI	CCWGG	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	156
BstV1I	GCAGC	2 cut(s)	84, 436
BstZ17I	GTATAC	1 cut(s)	364
Bsu15I	ATCGAT	1 cut(s)	228
BsuRI	GGCC	1 cut(s)	405
BsuTUI	ATCGAT	1 cut(s)	228
BtsCI	GGATG	2 cut(s)	135, 356
BtsIMutI	CAGTG	2 cut(s)	266, 373
Cac8I	GCNNGC	1 cut(s)	403
CaiI	CAGNNNCTG	1 cut(s)	324
ClaI	ATCGAT	1 cut(s)	228
CseI	GACGC	1 cut(s)	380
Csp6I	GTAC	2 cut(s)	258, 492
CviAII	CATG	2 cut(s)	148, 407
CviJI	RGCY	5 cut(s)	298, 405, 413, 427, 485
CviKI_1	RGCY	5 cut(s)	298, 405, 413, 427, 485
CviQI	GTAC	2 cut(s)	258, 492
DpnI	GATC	4 cut(s)	52, 227, 231, 436
DpnII	GATC	4 cut(s)	50, 225, 229, 434
Eam1104I	CTCTTC	1 cut(s)	11
EarI	CTCTTC	1 cut(s)	11
EcoRI	GAATTC	2 cut(s)	21, 204
EcoRII	CCWGG	1 cut(s)	156
FaeI	CATG	2 cut(s)	151, 410
FaiI	YATR	7 cut(s)	32, 144, 149, 364, 384, 392, 408
FatI	CATG	2 cut(s)	147, 406
FblI	GTMKAC	1 cut(s)	363
Fnu4HI	GCNGC	2 cut(s)	73, 425
FokI	GGATG	2 cut(s)	122, 363
Fsp4HI	GCNGC	2 cut(s)	73, 425
FspBI	CTAG	1 cut(s)	176
GluI	GCNGC	2 cut(s)	73, 425
HaeIII	GGCC	1 cut(s)	405
HgaI	GACGC	1 cut(s)	380
Hin1II	CATG	2 cut(s)	151, 410
HinfI	GANTC	3 cut(s)	4, 236, 321
HphI	GGTGA	2 cut(s)	197, 283
Hpy166II	GTNNAC	4 cut(s)	90, 188, 260, 364
Hpy188I	TCNGA	1 cut(s)	462
Hpy188III	TCNNGA	2 cut(s)	201, 233
Hpy8I	GTNNAC	4 cut(s)	90, 188, 260, 364
HpyCH4III	ACNGT	2 cut(s)	94, 368
HpyCH4V	TGCA	1 cut(s)	72
Hsp92II	CATG	2 cut(s)	151, 410
Kzo9I	GATC	4 cut(s)	50, 225, 229, 434
LmnI	GCTCC	2 cut(s)	398, 418
Lsp1109I	GCAGC	2 cut(s)	84, 436
LweI	GCATC	1 cut(s)	159
MaeI	CTAG	1 cut(s)	176
MaeIII	GTNAC	1 cut(s)	368
MalI	GATC	4 cut(s)	52, 227, 231, 436
MboI	GATC	4 cut(s)	50, 225, 229, 434
MboII	GAAGA	3 cut(s)	28, 67, 344
MluCI	AATT	6 cut(s)	21, 27, 76, 204, 216, 417
MlyI	GAGTC	1 cut(s)	330
MnlI	CCTC	2 cut(s)	125, 389
MseI	TTAA	1 cut(s)	215
MspR9I	CCNGG	1 cut(s)	158
Mva1269I	GAATGC	1 cut(s)	474
MvaI	CCWGG	1 cut(s)	158
NdeII	GATC	4 cut(s)	50, 225, 229, 434
NlaIII	CATG	2 cut(s)	151, 410
NmuCI	GTSAC	1 cut(s)	368
PctI	GAATGC	1 cut(s)	474
PfeI	GAWTC	2 cut(s)	4, 236
PkrI	GCNGC	2 cut(s)	74, 426
PleI	GAGTC	1 cut(s)	329
PpsI	GAGTC	1 cut(s)	329
Psp6I	CCWGG	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	156
PstNI	CAGNNNCTG	1 cut(s)	324
RsaI	GTAC	2 cut(s)	259, 493
RsaNI	GTAC	2 cut(s)	258, 492
SaqAI	TTAA	1 cut(s)	215
SatI	GCNGC	2 cut(s)	73, 425
Sau3AI	GATC	4 cut(s)	50, 225, 229, 434
ScaI	AGTACT	1 cut(s)	493
SchI	GAGTC	1 cut(s)	330
ScrFI	CCNGG	1 cut(s)	158
SetI	ASST	4 cut(s)	159, 187, 345, 415
SfaNI	GCATC	1 cut(s)	159
Sse9I	AATT	6 cut(s)	21, 27, 76, 204, 216, 417
SspMI	CTAG	1 cut(s)	176
StyD4I	CCNGG	1 cut(s)	156
TaaI	ACNGT	2 cut(s)	94, 368
TaqI	TCGA	2 cut(s)	53, 228
TasI	AATT	6 cut(s)	21, 27, 76, 204, 216, 417
TatI	WGTACW	2 cut(s)	257, 491
TfiI	GAWTC	2 cut(s)	4, 236
Tru1I	TTAA	1 cut(s)	215
Tru9I	TTAA	1 cut(s)	215
TscAI	CASTG	2 cut(s)	273, 373
TseFI	GTSAC	1 cut(s)	368
TseI	GCWGC	2 cut(s)	72, 424
Tsp45I	GTSAC	1 cut(s)	368
TspDTI	ATGAA	4 cut(s)	17, 164, 423, 444
TspGWI	ACGGA	1 cut(s)	277
TspRI	CASTG	2 cut(s)	273, 373
XapI	RAATTY	2 cut(s)	21, 204
XmiI	GTMKAC	1 cut(s)	363
XspI	CTAG	1 cut(s)	176
ZrmI	AGTACT	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.