Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001027

Physical Location & Seq

Genomic Coordinates Reverse (-)

39788595 .. 39794206

Gene Structure 5612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0232800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

ATGTTAGCGGTTCGATCCCGGAAACCCGCCGGATACGACGACGTTCCGACGCTCCCTCTTTACCGCTCCGCCCCGGCCCTTGATGTTCGCCTCGAAGAGTTCGAGCTTTTCGCCATCGATCGCCTCCGAGTGCTCAAAGGGATATCGGATGGATTATCACGAGGAAAGAAACATGAAGAAATGGAGAAATTGGTGAATGATCTTTGGAAGACAAATATGAGGCACCCTCAGGCATCAGAGGACATCAACAAGGACATAATATCACACTTTGTTCTGCGTCTTGTTTATTGCAGAACGGAGGAACTGAGGAAATGGTTTCTTTCCATGGAGACTGCCCTATTTCGTCACCGTTTTCGCAATGAAAGGCCTGAAGCTCAGAGGTCACTCATGGCAGAATTTGGTCTTGCCTACAAGAAAGTTGATATTTCAGAACTCGAGAGTGTAATGGACAAACTGACCCAGGTTGCGCGTTCCACGAGTCAATCTTTACCCACTGCTGATGCCATATTTTACAAGGTACCATTTGAAGAAGTTCCAGAACTTGTCGGTAGCCGTAGAGTATTCATCAGCAAGGGGCATGCATATATAGCTATGAGTCAGGTGGTTTCCCTTGTTGCCACACATTTCCGCAGTCATCTGTCAAAAGCACTGATGTTGACTAACAGAAAATGGACATCAACTATAGTAGAACAAGAGAAAAATCGGTTGACTCCTATAGTTGAAGCCCTATCCACAAGCTACCTGGGTCCGGACTATTCTCAGCCAAAAGAATTTGCTGAGATATCCTTAAGAGACATTGATGACATAGCTAAGAGCTCGTTTCCTATGTGCATGCGCCACCTATTTGAAAAGCTGAGAGAGGAGCATCATCTAAAGCATGGAGGGAGAATGCAACTGGGTCTCTTTCTCAAGGGTGTTGGGTTGAAACTGGATGATGCACTTGCATTTTGGAAAGCTGAGTTCTCACGAAAGGTTGGTGCTGAGAGGTTTGACAAAGAATATGCATATGGCATACGCCACAATTATGGAAGAGAAGGAAAAAGAACGGATTACACGCCTTATTCCTGTCAAAAGATCATCTCATCTACTCCTGGCGTAGGAGATCATCATGGATGCCCATATCGGCATTTCAGTGAAGAGAATCTGACAGCTGCTCTCGGTAGAATGGGAGTTAACAGTCGTGCTCTTGGCGATGTAATGAACAAAGTTCGGAATAAGCATTATCAGTTGGCATGCACCTTAACATTTGAAGCTGTCCATGGGACATCATGCGAAGCTGGGATTAACCATCCAAATCAATACTTCTCTGACAGCCAAATGATTATGAAGTCAAAGAATCAATCTACAGCGAAGGACACGCAAATGCAAATAGAATCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009505 GO:0009506 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030054 GO:0030163 GO:0030312 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0051603 GO:0055044 GO:0070008 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

460

Amino Acids

52.7

Weight (kDa)

9.05

Isoelectric Point (pI)

42.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_primase_lrg_N	PF26466	24 - 225	3.8e-58	Eukaryotic and archaeal DNA primase, large subunit N-terminal domain
DNA_primase_lrg	PF04104	268 - 435	2e-65	Eukaryotic and archaeal DNA primase, large subunit C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28110 AT1G28110 AT2G33530
fragaria_vesca	FvH4_4g22840 FvH4_4g22840 FvH4_4g22840 FvH4_4g22840 FvH4_4g22840 FvH4_5g09210 FvH4_5g09210 FvH4_5g09210 FvH4_5g09210
malus_domestica	MD06G1132500.v1.1 MD08G1237600.v1.1 MD08G1237700.v1.1 MD08G1237800.v1.1 MD08G1238200.v1.1 MD08G1238400.v1.1 MD13G1129200.v1.1 MD14G1148900.v1.1 MD16G1129200.v1.1
prunus_persica	Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.5G143500_v2.0.a1 Prupe.7G030500_v2.0.a1 Prupe.7G030500_v2.0.a1
pyrus_communis	pycom06g12410 pycom08g20620 pycom08g20640 pycom08g20650 pycom08g20670 pycom13g11220 pycom14g12370 pycom16g10950
rosa_chinensis	RchiOBHm_Chr4g0429071 RchiOBHm_Chr7g0188951
rosa_laevigata	RLG00000004647 RLG00000007099
rosa_multiflora	Rmu_co8506825.1_g000001 Rmu_sc0001753.1_g000029 Rmu_sc0008629.1_g000021 Rmu_ssc0000113.1_g000005
rosa_roxburghii	Rroxscaffold_3G00265910 Rroxscaffold_5G00370710
rosa_rugosa	Rorug04G0232700 Rorug04G0232800 Rorug04G0232900 Rorug04G0232900 Rorug06G0495100
rosa_samantha	Rh4AG288500 Rh4BG294700 Rh4CG310200 Rh4DG291600 Rh7BG101900 Rh7CG103200
rosa_wichuraiana	Rw4G025010 Rw7G008600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	517
AccB1I	GGYRCC	2 cut(s)	222, 517
AccBSI	CCGCTC	1 cut(s)	66
AccII	CGCG	1 cut(s)	469
AccIII	TCCGGA	1 cut(s)	748
AciI	CCGC	5 cut(s)	8, 27, 64, 69, 628
AclWI	GGATC	1 cut(s)	9
AcsI	RAATTY	2 cut(s)	395, 770
AcuI	CTGAAG	1 cut(s)	390
AfaI	GTAC	1 cut(s)	519
AfiI	CCNNNNNNNGG	2 cut(s)	748, 1097
AflII	CTTAAG	1 cut(s)	787
AgsI	TTSAA	5 cut(s)	527, 722, 848, 925, 1250
AjnI	CCWGG	3 cut(s)	459, 741, 1090
Alw21I	GWGCWC	3 cut(s)	135, 818, 1186
Alw26I	GTCTC	3 cut(s)	323, 786, 905
AlwI	GGATC	1 cut(s)	9
Ama87I	CYCGRG	1 cut(s)	434
Aor13HI	TCCGGA	1 cut(s)	748
AoxI	GGCC	2 cut(s)	75, 365
ApeKI	GCWGC	1 cut(s)	1151
ApoI	RAATTY	2 cut(s)	395, 770
Asp700I	GAANNNNTTC	1 cut(s)	531
Asp718I	GGTACC	1 cut(s)	517
AspLEI	GCGC	2 cut(s)	469, 837
AspS9I	GGNCC	2 cut(s)	76, 746
AsuC2I	CCSGG	2 cut(s)	19, 74
AsuHPI	GGTGA	2 cut(s)	205, 338
AvaI	CYCGRG	1 cut(s)	434
AvaII	GGWCC	1 cut(s)	746
AxyI	CCTNAGG	1 cut(s)	228
BanI	GGYRCC	2 cut(s)	222, 517
BanII	GRGCYC	1 cut(s)	818
BauI	CACGAG	2 cut(s)	159, 475
BbsI	GAAGAC	1 cut(s)	215
Bbv12I	GWGCWC	3 cut(s)	135, 818, 1186
BbvI	GCAGC	1 cut(s)	1138
BccI	CCATC	3 cut(s)	122, 143, 1296
BceAI	ACGGC	1 cut(s)	537
BciT130I	CCWGG	3 cut(s)	461, 743, 1092
BciVI	GTATCC	1 cut(s)	26
BcnI	CCSGG	2 cut(s)	19, 74
BcoDI	GTCTC	3 cut(s)	323, 786, 905
BfmI	CTRYAG	3 cut(s)	681, 714, 1344
BfrI	CTTAAG	1 cut(s)	787
BfuI	GTATCC	1 cut(s)	26
BisI	GCNGC	1 cut(s)	1152
BlsI	GCNGC	1 cut(s)	1153
Bme1390I	CCNGG	5 cut(s)	19, 74, 461, 743, 1092
Bme18I	GGWCC	1 cut(s)	746
BmeT110I	CYCGRG	1 cut(s)	434
BmgT120I	GGNCC	2 cut(s)	76, 746
BmiI	GGNNCC	3 cut(s)	224, 519, 747
BmrFI	CCNGG	5 cut(s)	19, 74, 461, 743, 1092
BmrI	ACTGGG	1 cut(s)	905
BmsI	GCATC	5 cut(s)	242, 490, 874, 925, 1103
BmuI	ACTGGG	1 cut(s)	905
BpiI	GAAGAC	1 cut(s)	215
BplI	GAGNNNNNCTC	2 cut(s)	211, 243
BpuEI	CTTGAG	1 cut(s)	893
BpuMI	CCSGG	2 cut(s)	19, 74
Bsa29I	ATCGAT	1 cut(s)	117
BsaI	GGTCTC	1 cut(s)	905
BsaJI	CCNNGG	5 cut(s)	72, 324, 459, 742, 1258
BsaWI	WCCGGW	1 cut(s)	748
Bsc4I	CCNNNNNNNGG	2 cut(s)	748, 1097
Bse1I	ACTGG	2 cut(s)	900, 933
Bse21I	CCTNAGG	1 cut(s)	228
Bse3DI	GCAATG	1 cut(s)	364
BseAI	TCCGGA	1 cut(s)	748
BseBI	CCWGG	3 cut(s)	461, 743, 1092
BseCI	ATCGAT	1 cut(s)	117
BseDI	CCNNGG	5 cut(s)	72, 324, 459, 742, 1258
BseGI	GGATG	4 cut(s)	154, 937, 1118, 1288
BseLI	CCNNNNNNNGG	2 cut(s)	748, 1097
BseMI	GCAATG	1 cut(s)	364
BseMII	CTCAG	8 cut(s)	242, 296, 389, 768, 773, 845, 948, 972
BseNI	ACTGG	2 cut(s)	900, 933
BseRI	GAGGAG	1 cut(s)	875
BseXI	GCAGC	1 cut(s)	1138
BseYI	CCCAGC	1 cut(s)	1277
Bsh1236I	CGCG	1 cut(s)	469
Bsh1285I	CGRYCG	1 cut(s)	121
BshFI	GGCC	2 cut(s)	77, 367
BshNI	GGYRCC	2 cut(s)	222, 517
BshVI	ATCGAT	1 cut(s)	117
BsiEI	CGRYCG	1 cut(s)	121
BsiHKAI	GWGCWC	3 cut(s)	135, 818, 1186
BsiHKCI	CYCGRG	1 cut(s)	434
BsiSI	CCGG	4 cut(s)	19, 30, 74, 749
BslFI	GGGAC	1 cut(s)	1276
BslI	CCNNNNNNNGG	2 cut(s)	748, 1097
BsmAI	GTCTC	3 cut(s)	323, 786, 905
BsmFI	GGGAC	1 cut(s)	1276
BsmI	GAATGC	1 cut(s)	894
BsnI	GGCC	2 cut(s)	77, 367
Bso31I	GGTCTC	1 cut(s)	905
BsoBI	CYCGRG	1 cut(s)	434
Bsp1286I	GDGCHC	3 cut(s)	135, 818, 1186
Bsp13I	TCCGGA	1 cut(s)	748
Bsp143I	GATC	5 cut(s)	14, 118, 199, 1074, 1102
Bsp19I	CCATGG	2 cut(s)	324, 1258
BspACI	CCGC	5 cut(s)	8, 27, 64, 69, 628
BspANI	GGCC	2 cut(s)	77, 367
BspCNI	CTCAG	8 cut(s)	241, 297, 388, 769, 772, 846, 949, 973
BspDI	ATCGAT	1 cut(s)	117
BspEI	TCCGGA	1 cut(s)	748
BspFNI	CGCG	1 cut(s)	469
BspLI	GGNNCC	3 cut(s)	224, 519, 747
BspPI	GGATC	1 cut(s)	9
BspT107I	GGYRCC	2 cut(s)	222, 517
BspTI	CTTAAG	1 cut(s)	787
BspTNI	GGTCTC	1 cut(s)	905
BsrBI	CCGCTC	1 cut(s)	66
BsrDI	GCAATG	1 cut(s)	364
BsrI	ACTGG	2 cut(s)	900, 933
BssECI	CCNNGG	5 cut(s)	72, 324, 459, 742, 1258
BssMI	GATC	5 cut(s)	14, 118, 199, 1074, 1102
BssSI	CACGAG	2 cut(s)	159, 475
BssT1I	CCWWGG	2 cut(s)	324, 1258
Bst2BI	CACGAG	2 cut(s)	159, 475
Bst2UI	CCWGG	3 cut(s)	461, 743, 1092
Bst4CI	ACNGT	2 cut(s)	350, 1178
Bst6I	CTCTTC	3 cut(s)	90, 1024, 1131
BstAFI	CTTAAG	1 cut(s)	787
BstC8I	GCNNGC	3 cut(s)	579, 833, 1234
BstDEI	CTNAG	9 cut(s)	228, 305, 375, 759, 777, 810, 854, 957, 981
BstDSI	CCRYGG	2 cut(s)	324, 1258
BstENI	CCTNNNNNAGG	1 cut(s)	1095
BstF5I	GGATG	4 cut(s)	154, 937, 1118, 1288
BstFNI	CGCG	1 cut(s)	469
BstHHI	GCGC	2 cut(s)	469, 837
BstKTI	GATC	5 cut(s)	17, 121, 202, 1077, 1105
BstMAI	GTCTC	3 cut(s)	323, 786, 905
BstMBI	GATC	5 cut(s)	14, 118, 199, 1074, 1102
BstMCI	CGRYCG	1 cut(s)	121
BstMWI	GCNNNNNNNGC	1 cut(s)	587
BstNI	CCWGG	3 cut(s)	461, 743, 1092
BstNSI	RCATGY	3 cut(s)	581, 835, 1236
BstSCI	CCNGG	5 cut(s)	17, 72, 459, 741, 1090
BstSFI	CTRYAG	3 cut(s)	681, 714, 1344
BstUI	CGCG	1 cut(s)	469
BstV1I	GCAGC	1 cut(s)	1138
BstV2I	GAAGAC	1 cut(s)	215
BstXI	CCANNNNNNTGG	1 cut(s)	1025
Bsu15I	ATCGAT	1 cut(s)	117
Bsu36I	CCTNAGG	1 cut(s)	228
BsuI	GTATCC	1 cut(s)	26
BsuRI	GGCC	2 cut(s)	77, 367
BsuTUI	ATCGAT	1 cut(s)	117
BtgI	CCRYGG	2 cut(s)	324, 1258
BtgZI	GCGATG	1 cut(s)	1206
BtsCI	GGATG	4 cut(s)	154, 937, 1118, 1288
BtsI	GCAGTG	1 cut(s)	492
BtsIMutI	CAGTG	3 cut(s)	492, 647, 1138
Cac8I	GCNNGC	3 cut(s)	579, 833, 1234
CfoI	GCGC	2 cut(s)	469, 837
Cfr13I	GGNCC	2 cut(s)	76, 746
ClaI	ATCGAT	1 cut(s)	117
CseI	GACGC	2 cut(s)	58, 266
Csp6I	GTAC	1 cut(s)	518
CviQI	GTAC	1 cut(s)	518
DdeI	CTNAG	9 cut(s)	228, 305, 375, 759, 777, 810, 854, 957, 981
DpnI	GATC	5 cut(s)	16, 120, 201, 1076, 1104
DpnII	GATC	5 cut(s)	14, 118, 199, 1074, 1102
Eam1104I	CTCTTC	3 cut(s)	90, 1024, 1131
EarI	CTCTTC	3 cut(s)	90, 1024, 1131
EciI	GGCGGA	1 cut(s)	58
Ecl136II	GAGCTC	1 cut(s)	816
Eco130I	CCWWGG	2 cut(s)	324, 1258
Eco147I	AGGCCT	1 cut(s)	367
Eco24I	GRGCYC	1 cut(s)	818
Eco31I	GGTCTC	1 cut(s)	905
Eco32I	GATATC	2 cut(s)	144, 783
Eco47I	GGWCC	1 cut(s)	746
Eco53kI	GAGCTC	1 cut(s)	816
Eco57I	CTGAAG	1 cut(s)	390
Eco81I	CCTNAGG	1 cut(s)	228
Eco88I	CYCGRG	1 cut(s)	434
EcoICRI	GAGCTC	1 cut(s)	816
EcoNI	CCTNNNNNAGG	1 cut(s)	1095
EcoRII	CCWGG	3 cut(s)	459, 741, 1090
EcoRV	GATATC	2 cut(s)	144, 783
EcoT14I	CCWWGG	2 cut(s)	324, 1258
EcoT22I	ATGCAT	2 cut(s)	583, 1006
EcoT38I	GRGCYC	1 cut(s)	818
ErhI	CCWWGG	2 cut(s)	324, 1258
FaqI	GGGAC	1 cut(s)	1276
FauI	CCCGC	1 cut(s)	34
FauNDI	CATATG	1 cut(s)	1006
Fnu4HI	GCNGC	1 cut(s)	1152
FokI	GGATG	4 cut(s)	161, 944, 1125, 1275
FriOI	GRGCYC	1 cut(s)	818
Fsp4HI	GCNGC	1 cut(s)	1152
GlaI	GCGC	2 cut(s)	468, 836
GluI	GCNGC	1 cut(s)	1152
GsaI	CCCAGC	1 cut(s)	1281
HaeIII	GGCC	2 cut(s)	77, 367
HapII	CCGG	4 cut(s)	19, 30, 74, 749
HgaI	GACGC	2 cut(s)	58, 266
HhaI	GCGC	2 cut(s)	469, 837
Hin6I	GCGC	2 cut(s)	467, 835
HinP1I	GCGC	2 cut(s)	467, 835
HincII	GTYRAC	3 cut(s)	657, 708, 1174
HindII	GTYRAC	3 cut(s)	657, 708, 1174
HinfI	GANTC	6 cut(s)	478, 595, 709, 1141, 1336, 1373
HpaI	GTTAAC	1 cut(s)	1174
HpaII	CCGG	4 cut(s)	19, 30, 74, 749
HphI	GGTGA	2 cut(s)	205, 338
Hpy166II	GTNNAC	3 cut(s)	657, 708, 1174
Hpy188I	TCNGA	9 cut(s)	48, 128, 148, 238, 378, 430, 1146, 1212, 1309
Hpy188III	TCNNGA	6 cut(s)	159, 436, 536, 749, 966, 1380
Hpy8I	GTNNAC	3 cut(s)	657, 708, 1174
Hpy99I	CGWCG	3 cut(s)	41, 44, 52
HpyAV	CCTTC	2 cut(s)	1028, 1345
HpyCH4III	ACNGT	2 cut(s)	350, 1178
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	9 cut(s)	291, 581, 831, 892, 938, 944, 1004, 1236, 1366
HpyF10VI	GCNNNNNNNGC	1 cut(s)	587
HpyF3I	CTNAG	9 cut(s)	228, 305, 375, 759, 777, 810, 854, 957, 981
HpySE526I	ACGT	1 cut(s)	42
HspAI	GCGC	2 cut(s)	467, 835
Kpn2I	TCCGGA	1 cut(s)	748
KpnI	GGTACC	1 cut(s)	521
KspAI	GTTAAC	1 cut(s)	1174
Kzo9I	GATC	5 cut(s)	14, 118, 199, 1074, 1102
LmnI	GCTCC	3 cut(s)	57, 71, 862
Lsp1109I	GCAGC	1 cut(s)	1138
LweI	GCATC	5 cut(s)	242, 490, 874, 925, 1103
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	2 cut(s)	344, 381
MalI	GATC	5 cut(s)	16, 120, 201, 1076, 1104
MbiI	CCGCTC	1 cut(s)	66
MboI	GATC	5 cut(s)	14, 118, 199, 1074, 1102
MboII	GAAGA	7 cut(s)	107, 188, 220, 539, 1041, 1148, 1368
MhlI	GDGCHC	3 cut(s)	135, 818, 1186
MluCI	AATT	4 cut(s)	188, 395, 770, 1021
MlyI	GAGTC	3 cut(s)	487, 604, 703
MmeI	TCCRAC	1 cut(s)	71
Mph1103I	ATGCAT	2 cut(s)	583, 1006
MroI	TCCGGA	1 cut(s)	748
MroXI	GAANNNNTTC	1 cut(s)	531
MseI	TTAA	4 cut(s)	788, 1173, 1241, 1284
MslI	CAYNNNNRTG	3 cut(s)	1023, 1131, 1361
MspA1I	CMGCKG	1 cut(s)	1151
MspCI	CTTAAG	1 cut(s)	787
MspI	CCGG	4 cut(s)	19, 30, 74, 749
MspR9I	CCNGG	5 cut(s)	19, 74, 461, 743, 1092
Mva1269I	GAATGC	1 cut(s)	894
MvaI	CCWGG	3 cut(s)	461, 743, 1092
MvnI	CGCG	1 cut(s)	469
MwoI	GCNNNNNNNGC	1 cut(s)	587
NciI	CCSGG	2 cut(s)	19, 74
NcoI	CCATGG	2 cut(s)	324, 1258
NdeI	CATATG	1 cut(s)	1006
NdeII	GATC	5 cut(s)	14, 118, 199, 1074, 1102
NlaIV	GGNNCC	3 cut(s)	224, 519, 747
NmuCI	GTSAC	2 cut(s)	344, 381
NsiI	ATGCAT	2 cut(s)	583, 1006
NspI	RCATGY	3 cut(s)	581, 835, 1236
PaeI	GCATGC	3 cut(s)	581, 835, 1236
PaeR7I	CTCGAG	1 cut(s)	434
PceI	AGGCCT	1 cut(s)	367
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PctI	GAATGC	1 cut(s)	894
PdmI	GAANNNNTTC	1 cut(s)	531
PfeI	GAWTC	3 cut(s)	1141, 1336, 1373
PfoI	TCCNGGA	1 cut(s)	17
PkrI	GCNGC	1 cut(s)	1153
Ple19I	CGATCG	1 cut(s)	121
PleI	GAGTC	3 cut(s)	486, 603, 703
PpsI	GAGTC	3 cut(s)	486, 603, 703
Psp124BI	GAGCTC	1 cut(s)	818
Psp6I	CCWGG	3 cut(s)	459, 741, 1090
PspFI	CCCAGC	1 cut(s)	1277
PspGI	CCWGG	3 cut(s)	459, 741, 1090
PspN4I	GGNNCC	3 cut(s)	224, 519, 747
PspPI	GGNCC	2 cut(s)	76, 746
PvuI	CGATCG	1 cut(s)	121
PvuII	CAGCTG	1 cut(s)	1151
RsaI	GTAC	1 cut(s)	519
RsaNI	GTAC	1 cut(s)	518
RseI	CAYNNNNRTG	3 cut(s)	1023, 1131, 1361
SacI	GAGCTC	1 cut(s)	818
SaqAI	TTAA	4 cut(s)	788, 1173, 1241, 1284
SatI	GCNGC	1 cut(s)	1152
Sau3AI	GATC	5 cut(s)	14, 118, 199, 1074, 1102
Sau96I	GGNCC	2 cut(s)	76, 746
SchI	GAGTC	3 cut(s)	487, 604, 703
ScrFI	CCNGG	5 cut(s)	19, 74, 461, 743, 1092
SduI	GDGCHC	3 cut(s)	135, 818, 1186
SfaNI	GCATC	5 cut(s)	242, 490, 874, 925, 1103
SfcI	CTRYAG	3 cut(s)	681, 714, 1344
Sfr274I	CTCGAG	1 cut(s)	434
SinI	GGWCC	1 cut(s)	746
SlaI	CTCGAG	1 cut(s)	434
SmiMI	CAYNNNNRTG	3 cut(s)	1023, 1131, 1361
SmlI	CTYRAG	3 cut(s)	434, 787, 908
SmoI	CTYRAG	3 cut(s)	434, 787, 908
SphI	GCATGC	3 cut(s)	581, 835, 1236
Sse9I	AATT	4 cut(s)	188, 395, 770, 1021
SseBI	AGGCCT	1 cut(s)	367
SsiI	CCGC	5 cut(s)	8, 27, 64, 69, 628
SstI	GAGCTC	1 cut(s)	818
StuI	AGGCCT	1 cut(s)	367
StyD4I	CCNGG	5 cut(s)	17, 72, 459, 741, 1090
StyI	CCWWGG	2 cut(s)	324, 1258
TaaI	ACNGT	2 cut(s)	350, 1178
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	5 cut(s)	13, 93, 102, 117, 435
TasI	AATT	4 cut(s)	188, 395, 770, 1021
TfiI	GAWTC	3 cut(s)	1141, 1336, 1373
Tru1I	TTAA	4 cut(s)	788, 1173, 1241, 1284
Tru9I	TTAA	4 cut(s)	788, 1173, 1241, 1284
TscAI	CASTG	3 cut(s)	499, 654, 1138
TseFI	GTSAC	2 cut(s)	344, 381
TseI	GCWGC	1 cut(s)	1151
Tsp45I	GTSAC	2 cut(s)	344, 381
TspDTI	ATGAA	5 cut(s)	189, 375, 553, 1214, 1340
TspGWI	ACGGA	2 cut(s)	311, 1061
TspRI	CASTG	3 cut(s)	499, 654, 1138
Vha464I	CTTAAG	1 cut(s)	787
VpaK11BI	GGWCC	1 cut(s)	746
XagI	CCTNNNNNAGG	1 cut(s)	1095
XapI	RAATTY	2 cut(s)	395, 770
XceI	RCATGY	3 cut(s)	581, 835, 1236
XcmI	CCANNNNNNNNNTGG	1 cut(s)	739
XhoI	CTCGAG	1 cut(s)	434
XmnI	GAANNNNTTC	1 cut(s)	531
Zsp2I	ATGCAT	2 cut(s)	583, 1006

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.