Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001669

Physical Location & Seq

Genomic Coordinates Reverse (-)

9896867 .. 9899876

Gene Structure 3010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G28300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGATAACTTCTTACCCTTTCCCTCTTCTAACGCAAACTCTGTCCAAGAACTCTCTATGGATCCTAACAACAATCGCTCGCACTTCACAACAGTCCCTACTTATGATCATCATCAGGCTCAGCCTCATCACTTCTTGCCTCCGTTTTCATACCCGGTGGAGCAGATGGCGGCGGTGATGAATCCTCAGCCGGTTTACTTATCGGAGTGTTATCCTCAGATCCCGGTTACGCAAACCGGAAGTGAATTCGGTTCTCTGGTTGGTAATCCTTGTTTGTGGCAAGAGAGAGGTGGTTTTCTTGATCCGCGTATGACGAAGATGGCAAGGATCAACAGGAAAAACGCCATGATGAGATCAAGAAACAACTCTAGCCCTAATTCTAGTCCAAGTGAGTTGGTTGATTCAAAGAGACAGCTGATGATGCTTAACTTGAAAAATAACGTGCAGATCTCCGACAAGAAAGATAGCTACCAACAGTCCACATTTGATAACAAGAAGCTTAGGGTTTTGTGTGAGAAGGAATTGAAGAACAGCGATGTTGGGTCACTCGGGAGGATAGTTCTACCAAAGAGAGATGCAGAAGCAAATCTTCCGAAGCTATCTGATAAAGAAGGAATCGTTGTACAGATGAGAGATGTTTTCTCTATGCAGTCTTGGTCTTTCAAATACAAGTTTTGGTCCAATAACAAGAGCAGAATGTATGTCCTCGAGAACACAGGAGAATTTGTGAAGCAAAATGGAGCTGAGATAGGAGACTTTTTAACAATATACGAGGACGAAAGCAAGAATCTCTACTTCGCCATGAATGGAAATTCGGGAAAACAAAATGAAGGAAGAGAAAATGAGTCGAGGGAAAGGAACCACTACGAAGAGGCAATGCTTGATTACATACCAAGAGACGAAGAGGAAGCTTCCATTGCAATGCTCATCGGAAATCTAAACGATCACTATCCCATCCCTAACGATCTCATGGACCTCACCACTGACCTTCAGCACCATCAAGCCACGTCCTCATCAATGCCACCTGAGGATCACGCGTACGTGGGTTCATCCGATGATCAGGTGAGCTTTAACGACTTTGAGTGGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0010154 GO:0010262 GO:0010344 GO:0010431 GO:0010468 GO:0010556 GO:0010557 GO:0010600 GO:0010601 GO:0010604 GO:0010628 GO:0010817 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0032504 GO:0044085 GO:0045893 GO:0045935 GO:0046885 GO:0046886 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071695 GO:0071840 GO:0080090 GO:0090354 GO:0090355 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

363

Amino Acids

41.71

Weight (kDa)

5.21

Isoelectric Point (pI)

48.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	172 - 266	3.3e-15	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28300
fragaria_vesca	FvH4_3g08960 FvH4_3g21641 FvH4_5g20960
malus_domestica	MD00G1115600.v1.1 MD10G1292400.v1.1
prunus_persica	Prupe.4G049500_v2.0.a1 Prupe.4G049500_v2.0.a1 Prupe.4G049500_v2.0.a1
pyrus_communis	pycom05g28900 pycom10g24450
rosa_chinensis	RchiOBHm_Chr5g0008771 RchiOBHm_Chr5g0008831 RchiOBHm_Chr5g0037101
rosa_laevigata	RLG00000031603 RLG00000033751
rosa_multiflora	Rmu_sc0001473.1_g000032 Rmu_sc0018628.1_g000002
rosa_roxburghii	Rroxscaffold_1G00043860 Rroxscaffold_1G00067180 Rroxscaffold_1G00067220 Rroxscaffold_1G00067780 Rroxscaffold_1G00067820
rosa_rugosa	Rorug04G0439000 Rorug04G0439000 Rorug04G0439000 Rorug04G0439500 Rorug04G0439500 Rorug04G0439500 Rorug04G0439600 Rorug04G0439600 Rorug05G0160700
rosa_samantha	Rh5AG067400 Rh5AG067700 Rh5AG252600 Rh5BG064300 Rh5BG064700 Rh5BG254400 Rh5CG075200 Rh5CG075600 Rh5CG075700 Rh5CG286900 Rh5DG061100 Rh5DG061200 Rh5DG061500 Rh5DG262800
rosa_wichuraiana	Rw5G005090 Rw5G006360 Rw5G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	307, 1037
AciI	CCGC	3 cut(s)	170, 173, 305
AclWI	GGATC	6 cut(s)	56, 69, 214, 296, 335, 1038
AcsI	RAATTY	3 cut(s)	245, 722, 811
AcuI	CTGAAG	1 cut(s)	974
AfaI	GTAC	2 cut(s)	624, 1040
AflIII	ACRYGT	1 cut(s)	1035
AgsI	TTSAA	4 cut(s)	405, 433, 526, 664
AjiI	CACGTC	1 cut(s)	1008
AluBI	AGCT	7 cut(s)	415, 468, 499, 598, 743, 911, 1068
AluI	AGCT	7 cut(s)	415, 468, 499, 598, 743, 911, 1068
Alw26I	GTCTC	3 cut(s)	403, 747, 891
AlwI	GGATC	6 cut(s)	56, 69, 214, 296, 335, 1038
Ama87I	CYCGRG	2 cut(s)	548, 707
ApoI	RAATTY	3 cut(s)	245, 722, 811
AspS9I	GGNCC	2 cut(s)	678, 973
AsuC2I	CCSGG	2 cut(s)	155, 224
AsuHPI	GGTGA	3 cut(s)	187, 970, 1075
AvaI	CYCGRG	2 cut(s)	548, 707
AvaII	GGWCC	2 cut(s)	678, 973
AxyI	CCTNAGG	1 cut(s)	1026
BamHI	GGATCC	1 cut(s)	61
BbvCI	CCTCAGC	1 cut(s)	186
BccI	CCATC	4 cut(s)	160, 313, 962, 1005
BclI	TGATCA	2 cut(s)	106, 1057
BcnI	CCSGG	2 cut(s)	155, 224
BcoDI	GTCTC	3 cut(s)	403, 747, 891
BfaI	CTAG	2 cut(s)	369, 381
BglII	AGATCT	1 cut(s)	447
BisI	GCNGC	1 cut(s)	171
BlpI	GCTNAGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	172
Bme1390I	CCNGG	2 cut(s)	155, 224
Bme18I	GGWCC	2 cut(s)	678, 973
BmeT110I	CYCGRG	2 cut(s)	548, 707
BmgBI	CACGTC	1 cut(s)	1008
BmgT120I	GGNCC	2 cut(s)	678, 973
BmiI	GGNNCC	2 cut(s)	63, 860
BmrFI	CCNGG	2 cut(s)	155, 224
BmsI	GCATC	2 cut(s)	411, 565
Bpu10I	CCTNAGC	2 cut(s)	186, 500
Bpu1102I	GCTNAGC	1 cut(s)	120
BpuMI	CCSGG	2 cut(s)	155, 224
BsaAI	YACGTR	1 cut(s)	1042
BsaBI	GATNNNNATC	2 cut(s)	111, 948
BsaWI	WCCGGW	1 cut(s)	236
BsaXI	ACNNNNNCTCC	2 cut(s)	711, 741
Bse118I	RCCGGY	1 cut(s)	190
Bse21I	CCTNAGG	1 cut(s)	1026
Bse3DI	GCAATG	3 cut(s)	882, 915, 927
Bse8I	GATNNNNATC	2 cut(s)	111, 948
BseGI	GGATG	2 cut(s)	954, 1049
BseJI	GATNNNNATC	2 cut(s)	111, 948
BseMI	GCAATG	3 cut(s)	882, 915, 927
BseMII	CTCAG	5 cut(s)	134, 200, 230, 735, 1017
BsgI	GTGCAG	1 cut(s)	464
Bsh1236I	CGCG	2 cut(s)	307, 1037
BsiHKCI	CYCGRG	2 cut(s)	548, 707
BsiSI	CCGG	4 cut(s)	155, 191, 224, 237
BsiWI	CGTACG	1 cut(s)	1038
BslFI	GGGAC	1 cut(s)	80
BsmAI	GTCTC	3 cut(s)	403, 747, 891
BsmBI	CGTCTC	1 cut(s)	891
BsmFI	GGGAC	1 cut(s)	80
BsoBI	CYCGRG	2 cut(s)	548, 707
Bsp1407I	TGTACA	1 cut(s)	622
Bsp1720I	GCTNAGC	1 cut(s)	120
BspACI	CCGC	3 cut(s)	170, 173, 305
BspCNI	CTCAG	5 cut(s)	133, 199, 229, 736, 1018
BspFNI	CGCG	2 cut(s)	307, 1037
BspLI	GGNNCC	2 cut(s)	63, 860
BspPI	GGATC	6 cut(s)	56, 69, 214, 296, 335, 1038
BsrDI	GCAATG	3 cut(s)	882, 915, 927
BsrFI	RCCGGY	1 cut(s)	190
BsrGI	TGTACA	1 cut(s)	622
BssAI	RCCGGY	1 cut(s)	190
Bst4CI	ACNGT	2 cut(s)	94, 477
Bst6I	CTCTTC	4 cut(s)	31, 829, 864, 897
BstAUI	TGTACA	1 cut(s)	622
BstBAI	YACGTR	1 cut(s)	1042
BstC8I	GCNNGC	1 cut(s)	80
BstDEI	CTNAG	6 cut(s)	120, 186, 216, 500, 744, 1026
BstF5I	GGATG	2 cut(s)	954, 1049
BstFNI	CGCG	2 cut(s)	307, 1037
BstMAI	GTCTC	3 cut(s)	403, 747, 891
BstMWI	GCNNNNNNNGC	2 cut(s)	421, 917
BstSCI	CCNGG	2 cut(s)	153, 222
BstUI	CGCG	2 cut(s)	307, 1037
BstX2I	RGATCY	3 cut(s)	61, 219, 447
BstYI	RGATCY	3 cut(s)	61, 219, 447
Bsu36I	CCTNAGG	1 cut(s)	1026
BtgZI	GCGATG	1 cut(s)	549
BtrI	CACGTC	1 cut(s)	1008
BtsCI	GGATG	2 cut(s)	954, 1049
BtsIMutI	CAGTG	1 cut(s)	981
Cac8I	GCNNGC	1 cut(s)	80
Cfr10I	RCCGGY	1 cut(s)	190
Cfr13I	GGNCC	2 cut(s)	678, 973
Csp6I	GTAC	2 cut(s)	623, 1039
CviAII	CATG	3 cut(s)	346, 802, 970
CviQI	GTAC	2 cut(s)	623, 1039
DdeI	CTNAG	6 cut(s)	120, 186, 216, 500, 744, 1026
Eam1104I	CTCTTC	4 cut(s)	31, 829, 864, 897
EarI	CTCTTC	4 cut(s)	31, 829, 864, 897
Eco47I	GGWCC	2 cut(s)	678, 973
Eco57I	CTGAAG	1 cut(s)	974
Eco81I	CCTNAGG	1 cut(s)	1026
Eco88I	CYCGRG	2 cut(s)	548, 707
EcoRI	GAATTC	1 cut(s)	245
Esp3I	CGTCTC	1 cut(s)	891
FaeI	CATG	3 cut(s)	349, 805, 973
FalI	AAGNNNNNCTT	2 cut(s)	573, 605
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	3 cut(s)	345, 801, 969
FbaI	TGATCA	2 cut(s)	106, 1057
Fnu4HI	GCNGC	1 cut(s)	171
FokI	GGATG	2 cut(s)	941, 1036
Fsp4HI	GCNGC	1 cut(s)	171
FspBI	CTAG	2 cut(s)	369, 381
GluI	GCNGC	1 cut(s)	171
HapII	CCGG	4 cut(s)	155, 191, 224, 237
Hin1II	CATG	3 cut(s)	349, 805, 973
HindIII	AAGCTT	2 cut(s)	497, 909
HinfI	GANTC	5 cut(s)	181, 401, 615, 787, 845
HpaII	CCGG	4 cut(s)	155, 191, 224, 237
HphI	GGTGA	3 cut(s)	187, 970, 1075
Hpy166II	GTNNAC	2 cut(s)	196, 480
Hpy188I	TCNGA	7 cut(s)	205, 219, 454, 594, 604, 932, 1054
Hpy188III	TCNNGA	5 cut(s)	299, 357, 550, 709, 816
Hpy8I	GTNNAC	2 cut(s)	196, 480
HpyAV	CCTTC	4 cut(s)	511, 605, 824, 998
HpyCH4III	ACNGT	2 cut(s)	94, 477
HpyCH4IV	ACGT	3 cut(s)	441, 1007, 1041
HpyCH4V	TGCA	4 cut(s)	445, 578, 649, 920
HpyF10VI	GCNNNNNNNGC	2 cut(s)	421, 917
HpyF3I	CTNAG	6 cut(s)	120, 186, 216, 500, 744, 1026
HpySE526I	ACGT	3 cut(s)	441, 1007, 1041
Hsp92II	CATG	3 cut(s)	349, 805, 973
Ksp22I	TGATCA	2 cut(s)	106, 1057
LmnI	GCTCC	2 cut(s)	160, 740
LweI	GCATC	2 cut(s)	411, 565
MaeI	CTAG	2 cut(s)	369, 381
MaeII	ACGT	3 cut(s)	441, 1007, 1041
MaeIII	GTNAC	2 cut(s)	226, 543
MboII	GAAGA	7 cut(s)	18, 328, 538, 581, 846, 881, 914
MflI	RGATCY	3 cut(s)	61, 219, 447
MluCI	AATT	5 cut(s)	245, 376, 521, 722, 811
MluI	ACGCGT	1 cut(s)	1035
MlyI	GAGTC	1 cut(s)	854
MmeI	TCCRAC	1 cut(s)	477
MseI	TTAA	3 cut(s)	426, 761, 1071
MslI	CAYNNNNRTG	1 cut(s)	920
MspA1I	CMGCKG	1 cut(s)	415
MspI	CCGG	4 cut(s)	155, 191, 224, 237
MspR9I	CCNGG	2 cut(s)	155, 224
MvnI	CGCG	2 cut(s)	307, 1037
MwoI	GCNNNNNNNGC	2 cut(s)	421, 917
NciI	CCSGG	2 cut(s)	155, 224
NlaIII	CATG	3 cut(s)	349, 805, 973
NlaIV	GGNNCC	2 cut(s)	63, 860
NmuCI	GTSAC	1 cut(s)	543
PaeR7I	CTCGAG	1 cut(s)	707
PfeI	GAWTC	4 cut(s)	181, 401, 615, 787
Pfl23II	CGTACG	1 cut(s)	1038
PkrI	GCNGC	1 cut(s)	172
PleI	GAGTC	1 cut(s)	853
PpsI	GAGTC	1 cut(s)	853
Ppu21I	YACGTR	1 cut(s)	1042
PspLI	CGTACG	1 cut(s)	1038
PspN4I	GGNNCC	2 cut(s)	63, 860
PspPI	GGNCC	2 cut(s)	678, 973
PsuI	RGATCY	3 cut(s)	61, 219, 447
PvuII	CAGCTG	1 cut(s)	415
RsaI	GTAC	2 cut(s)	624, 1040
RsaNI	GTAC	2 cut(s)	623, 1039
RseI	CAYNNNNRTG	1 cut(s)	920
SaqAI	TTAA	3 cut(s)	426, 761, 1071
SatI	GCNGC	1 cut(s)	171
Sau96I	GGNCC	2 cut(s)	678, 973
SchI	GAGTC	1 cut(s)	854
ScrFI	CCNGG	2 cut(s)	155, 224
SfaNI	GCATC	2 cut(s)	411, 565
Sfr274I	CTCGAG	1 cut(s)	707
SinI	GGWCC	2 cut(s)	678, 973
SlaI	CTCGAG	1 cut(s)	707
SmiMI	CAYNNNNRTG	1 cut(s)	920
SmlI	CTYRAG	1 cut(s)	707
SmoI	CTYRAG	1 cut(s)	707
Sse9I	AATT	5 cut(s)	245, 376, 521, 722, 811
SsiI	CCGC	3 cut(s)	170, 173, 305
SspMI	CTAG	2 cut(s)	369, 381
StyD4I	CCNGG	2 cut(s)	153, 222
TaaI	ACNGT	2 cut(s)	94, 477
TaiI	ACGT	3 cut(s)	444, 1010, 1044
TaqI	TCGA	2 cut(s)	708, 848
TasI	AATT	5 cut(s)	245, 376, 521, 722, 811
TatI	WGTACW	1 cut(s)	622
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	4 cut(s)	181, 401, 615, 787
Tru1I	TTAA	3 cut(s)	426, 761, 1071
Tru9I	TTAA	3 cut(s)	426, 761, 1071
TscAI	CASTG	1 cut(s)	988
TseFI	GTSAC	1 cut(s)	543
Tsp45I	GTSAC	1 cut(s)	543
TspDTI	ATGAA	5 cut(s)	138, 194, 818, 843, 1038
TspGWI	ACGGA	1 cut(s)	132
TspRI	CASTG	1 cut(s)	988
VpaK11BI	GGWCC	2 cut(s)	678, 973
XapI	RAATTY	3 cut(s)	245, 722, 811
XhoI	CTCGAG	1 cut(s)	707
XspI	CTAG	2 cut(s)	369, 381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.