Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001669

Physical Location & Seq

Genomic Coordinates Reverse (-)

5639396 .. 5643658

Gene Structure 4263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG075200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGAGAACTTCCGCCCACCTTTCACACCTTCAACAACTACCGCTAGCTCTTCTTCTCCATCTTCAACTCTGGAAAGTTCATCATCTCAGTTGTATCATGATCCAGTGGTTTGCTACCTACCACACCCACATTGGCAGCAACCACCATGTTTTTCATATCCTCCTCCCATGCGTCCTGATCCAATCCCAAGTTCGGCTGCGTGGGAAACAAGGATGGCACGCCAAAGAAGAGGCAACATTCTGAGAACAAGAAAAGCTGCTCGTGCCGCGGCTGCTTCTTCAAGGTTGGCAGTAGGGAAGGATCCATCTAGTGCTGTTTCTGAAAAGCCGAATGAACAATACATCTACTCATTCTGCACGCCGGATAACAAGAAACTGAGATTGTTGTTCAAAAAACAGCTGAAGAATAGTGACGTTGGATCTTTGGGCCGGATTGTCCTTCCGAAGAAAGAGGCTGAAAAATACCTTCCAAGCCTCTCCGACAAGGAAGGCATAGAGCTGAGAATCAGGGATGCTCTTTCAACCCAAGAGTGGGGTTTGAAATACAAGTTCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0010154 GO:0010262 GO:0010344 GO:0010431 GO:0010468 GO:0010556 GO:0010557 GO:0010600 GO:0010601 GO:0010604 GO:0010628 GO:0010817 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0032504 GO:0044085 GO:0045893 GO:0045935 GO:0046885 GO:0046886 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071695 GO:0071840 GO:0080090 GO:0090354 GO:0090355 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

185

Amino Acids

20.84

Weight (kDa)

9.79

Isoelectric Point (pI)

54.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28300
fragaria_vesca	FvH4_3g08960 FvH4_3g21641 FvH4_5g20960
malus_domestica	MD00G1115600.v1.1 MD10G1292400.v1.1
prunus_persica	Prupe.4G049500_v2.0.a1 Prupe.4G049500_v2.0.a1 Prupe.4G049500_v2.0.a1
pyrus_communis	pycom05g28900 pycom10g24450
rosa_chinensis	RchiOBHm_Chr5g0008771 RchiOBHm_Chr5g0008831 RchiOBHm_Chr5g0037101
rosa_laevigata	RLG00000031603 RLG00000033751
rosa_multiflora	Rmu_sc0001473.1_g000032 Rmu_sc0018628.1_g000002
rosa_roxburghii	Rroxscaffold_1G00043860 Rroxscaffold_1G00067180 Rroxscaffold_1G00067220 Rroxscaffold_1G00067780 Rroxscaffold_1G00067820
rosa_rugosa	Rorug04G0439000 Rorug04G0439000 Rorug04G0439000 Rorug04G0439500 Rorug04G0439500 Rorug04G0439500 Rorug04G0439600 Rorug04G0439600 Rorug05G0160700
rosa_samantha	Rh5AG067400 Rh5AG067700 Rh5AG252600 Rh5BG064300 Rh5BG064700 Rh5BG254400 Rh5CG075200 Rh5CG075600 Rh5CG075700 Rh5CG286900 Rh5DG061100 Rh5DG061200 Rh5DG061500 Rh5DG262800
rosa_wichuraiana	Rw5G005090 Rw5G006360 Rw5G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	269
AciI	CCGC	4 cut(s)	13, 42, 267, 269
AclWI	GGATC	5 cut(s)	95, 173, 296, 309, 427
AcuI	CTGAAG	1 cut(s)	422
AfiI	CCNNNNNNNGG	3 cut(s)	193, 531, 532
AgsI	TTSAA	7 cut(s)	33, 66, 282, 391, 522, 541, 553
AjuI	GAANNNNNNNTTGG	2 cut(s)	175, 207
AluBI	AGCT	4 cut(s)	48, 257, 400, 499
AluI	AGCT	4 cut(s)	48, 257, 400, 499
AlwI	GGATC	5 cut(s)	95, 173, 296, 309, 427
AoxI	GGCC	1 cut(s)	427
ApeKI	GCWGC	4 cut(s)	136, 197, 257, 272
AspS9I	GGNCC	1 cut(s)	427
AsuNHI	GCTAGC	1 cut(s)	44
BamHI	GGATCC	1 cut(s)	301
BauI	CACGAG	1 cut(s)	261
BbvI	GCAGC	4 cut(s)	148, 184, 244, 259
BccI	CCATC	3 cut(s)	67, 208, 313
BfaI	CTAG	2 cut(s)	45, 309
BisI	GCNGC	6 cut(s)	137, 198, 258, 267, 270, 273
BlsI	GCNGC	6 cut(s)	138, 199, 259, 268, 271, 274
BmgT120I	GGNCC	1 cut(s)	427
BmiI	GGNNCC	1 cut(s)	303
BmsI	GCATC	1 cut(s)	502
BmtI	GCTAGC	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	267
Bsc4I	CCNNNNNNNGG	3 cut(s)	193, 531, 532
Bse1I	ACTGG	1 cut(s)	104
BseDI	CCNNGG	1 cut(s)	267
BseGI	GGATG	2 cut(s)	219, 517
BseLI	CCNNNNNNNGG	3 cut(s)	193, 531, 532
BseMII	CTCAG	4 cut(s)	101, 233, 368, 491
BseNI	ACTGG	1 cut(s)	104
BseRI	GAGGAG	1 cut(s)	153
BseXI	GCAGC	4 cut(s)	148, 184, 244, 259
BsgI	GTGCAG	1 cut(s)	340
Bsh1236I	CGCG	1 cut(s)	269
BshFI	GGCC	1 cut(s)	429
BsiSI	CCGG	2 cut(s)	362, 430
BslI	CCNNNNNNNGG	3 cut(s)	193, 531, 532
BsnI	GGCC	1 cut(s)	429
Bsp143I	GATC	4 cut(s)	100, 178, 301, 419
BspACI	CCGC	4 cut(s)	13, 42, 267, 269
BspANI	GGCC	1 cut(s)	429
BspCNI	CTCAG	4 cut(s)	100, 234, 369, 492
BspFNI	CGCG	1 cut(s)	269
BspHI	TCATGA	1 cut(s)	97
BspLI	GGNNCC	1 cut(s)	303
BspOI	GCTAGC	1 cut(s)	48
BspPI	GGATC	5 cut(s)	95, 173, 296, 309, 427
BspQI	GCTCTTC	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	104
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	4 cut(s)	100, 178, 301, 419
BssSI	CACGAG	1 cut(s)	261
Bst2BI	CACGAG	1 cut(s)	261
Bst6I	CTCTTC	2 cut(s)	55, 223
BstC8I	GCNNGC	3 cut(s)	46, 220, 359
BstDEI	CTNAG	4 cut(s)	87, 242, 377, 500
BstDSI	CCRYGG	1 cut(s)	267
BstF5I	GGATG	2 cut(s)	219, 517
BstFNI	CGCG	1 cut(s)	269
BstKTI	GATC	4 cut(s)	103, 181, 304, 422
BstMBI	GATC	4 cut(s)	100, 178, 301, 419
BstMWI	GCNNNNNNNGC	3 cut(s)	263, 266, 272
BstUI	CGCG	1 cut(s)	269
BstV1I	GCAGC	4 cut(s)	148, 184, 244, 259
BstX2I	RGATCY	2 cut(s)	301, 419
BstYI	RGATCY	2 cut(s)	301, 419
BsuRI	GGCC	1 cut(s)	429
BtgI	CCRYGG	1 cut(s)	267
BtsCI	GGATG	2 cut(s)	219, 517
BtsIMutI	CAGTG	1 cut(s)	111
Cac8I	GCNNGC	3 cut(s)	46, 220, 359
CciI	TCATGA	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	427
Cfr42I	CCGCGG	1 cut(s)	270
CseI	GACGC	1 cut(s)	161
CviAII	CATG	3 cut(s)	98, 147, 169
DdeI	CTNAG	4 cut(s)	87, 242, 377, 500
DpnI	GATC	4 cut(s)	102, 180, 303, 421
DpnII	GATC	4 cut(s)	100, 178, 301, 419
Eam1104I	CTCTTC	2 cut(s)	55, 223
EarI	CTCTTC	2 cut(s)	55, 223
Eco57I	CTGAAG	1 cut(s)	422
FaeI	CATG	3 cut(s)	101, 150, 172
FaiI	YATR	5 cut(s)	99, 148, 157, 170, 494
FatI	CATG	3 cut(s)	97, 146, 168
Fnu4HI	GCNGC	6 cut(s)	137, 198, 258, 267, 270, 273
FokI	GGATG	2 cut(s)	226, 524
Fsp4HI	GCNGC	6 cut(s)	137, 198, 258, 267, 270, 273
FspBI	CTAG	2 cut(s)	45, 309
GluI	GCNGC	6 cut(s)	137, 198, 258, 267, 270, 273
HaeIII	GGCC	1 cut(s)	429
HapII	CCGG	2 cut(s)	362, 430
HgaI	GACGC	1 cut(s)	161
Hin1II	CATG	3 cut(s)	101, 150, 172
HinfI	GANTC	1 cut(s)	504
HpaII	CCGG	2 cut(s)	362, 430
Hpy188I	TCNGA	4 cut(s)	243, 322, 444, 481
Hpy188III	TCNNGA	3 cut(s)	71, 98, 176
HpyAV	CCTTC	5 cut(s)	39, 292, 449, 476, 482
HpyCH4IV	ACGT	1 cut(s)	414
HpyCH4V	TGCA	1 cut(s)	357
HpyF10VI	GCNNNNNNNGC	3 cut(s)	263, 266, 272
HpyF3I	CTNAG	4 cut(s)	87, 242, 377, 500
HpySE526I	ACGT	1 cut(s)	414
Hsp92II	CATG	3 cut(s)	101, 150, 172
KspI	CCGCGG	1 cut(s)	270
Kzo9I	GATC	4 cut(s)	100, 178, 301, 419
LguI	GCTCTTC	1 cut(s)	55
LpnPI	CCDG	6 cut(s)	56, 117, 189, 375, 443, 493
Lsp1109I	GCAGC	4 cut(s)	148, 184, 244, 259
LweI	GCATC	1 cut(s)	502
MaeI	CTAG	2 cut(s)	45, 309
MaeII	ACGT	1 cut(s)	414
MaeIII	GTNAC	1 cut(s)	410
MalI	GATC	4 cut(s)	102, 180, 303, 421
MboI	GATC	4 cut(s)	100, 178, 301, 419
MboII	GAAGA	7 cut(s)	42, 45, 54, 240, 270, 415, 457
MflI	RGATCY	2 cut(s)	301, 419
MmeI	TCCRAC	2 cut(s)	397, 504
MnlI	CCTC	5 cut(s)	171, 174, 224, 445, 485
MspA1I	CMGCKG	2 cut(s)	269, 400
MspI	CCGG	2 cut(s)	362, 430
MvnI	CGCG	1 cut(s)	269
MwoI	GCNNNNNNNGC	3 cut(s)	263, 266, 272
NdeII	GATC	4 cut(s)	100, 178, 301, 419
NheI	GCTAGC	1 cut(s)	44
NlaIII	CATG	3 cut(s)	101, 150, 172
NlaIV	GGNNCC	1 cut(s)	303
NmuCI	GTSAC	1 cut(s)	410
PagI	TCATGA	1 cut(s)	97
PciSI	GCTCTTC	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	504
PkrI	GCNGC	6 cut(s)	138, 199, 259, 268, 271, 274
PspN4I	GGNNCC	1 cut(s)	303
PspPI	GGNCC	1 cut(s)	427
PsuI	RGATCY	2 cut(s)	301, 419
PvuII	CAGCTG	1 cut(s)	400
SacII	CCGCGG	1 cut(s)	270
SapI	GCTCTTC	1 cut(s)	55
SatI	GCNGC	6 cut(s)	137, 198, 258, 267, 270, 273
Sau3AI	GATC	4 cut(s)	100, 178, 301, 419
Sau96I	GGNCC	1 cut(s)	427
SfaNI	GCATC	1 cut(s)	502
Sfr303I	CCGCGG	1 cut(s)	270
SgrBI	CCGCGG	1 cut(s)	270
SsiI	CCGC	4 cut(s)	13, 42, 267, 269
SspMI	CTAG	2 cut(s)	45, 309
TaiI	ACGT	1 cut(s)	417
TauI	GCSGC	2 cut(s)	269, 272
TfiI	GAWTC	1 cut(s)	504
TscAI	CASTG	1 cut(s)	111
TseFI	GTSAC	1 cut(s)	410
TseI	GCWGC	4 cut(s)	136, 197, 257, 272
Tsp45I	GTSAC	1 cut(s)	410
TspDTI	ATGAA	3 cut(s)	69, 144, 348
TspRI	CASTG	1 cut(s)	111
XcmI	CCANNNNNNNNNTGG	1 cut(s)	129
XspI	CTAG	2 cut(s)	45, 309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.