Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001669

Physical Location & Seq

Genomic Coordinates Forward (+)

31477447 .. 31480467

Gene Structure 3021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG286900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGAGAACTTCCATCAACCTTTCTTTCCTTCCACAACAACCACCATGACCTCCATTTATGAACCTATGAGTTCCTCCCCTTCAACTCTTGCTAGTTCATCCTCTTTGTCCTATCATTATCCAGCAGTTCAGTACCTACCACCACTCAATGGAGGCAGCCAGCTGTACTTTCAAAGCTCATACCCTAATTACCAGAAGCAGGCCTCTCAGCCCCCCTTCCAATATCCCAGGTATCCAGTCCTGCTTCCTCGGCCACAGCCAAATCCAGTCTCTGGAGATCAAGAAGGGATTGAGTCCAAGGCTGCAAGAGATGAGCAAAGGATGGCTCGCCAAAGAAGACTCTTTTTAAGCAGAAGCGCTGCTGACTCTGGGTCCTCATCAAGTTCAATGCAGATGGAGTTATGTGGTGCTGATTCTGATATGCAGAACACAGACCTCTGCACGCCGGATATGAAGTACTTCTCCATAGAAAAGGCAGGAACAAGACCATCACATGTAACTGAGTCCTCGTATGGACAACAGCACTGTGCTACCAACTCTAAAGATGGTAACGATGATGACGGCAGCAGTAGCATCAACACACAGATTACCAACTCTGACGATAACAACCACAAGAACAACACCAACATCAACACCTACATGAACTCCAGCAACAATGCTGACATCCACAGCGAAACCGATTCCAACAATACAAAATTGTACACACCATATACCTTCAATGAAGAAGATGAATGGTATCTAGCAGCACTGTTGGAAGATGAATCAAACAAGGTGGTGACACTGTCTGCAGATCCTGCTTTTTCATGTGGACGACTTAAGGAAGTTAATAGCTCCATCGACAATGTCATCAATACTCAATTAGAAAGCTCTACTCAACCAGCTATGGCAGGAATTGGGGCCTCATCATCGTCCTCACAGAGCACAGTGAAGATGGTGGAGGATCACTTCGATGACTGTTACAAAGGGCTTGGGACGCTTCCGGCAGTTGATCGCTATGAGCATGATGATTTTTTATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0010154 GO:0010262 GO:0010344 GO:0010431 GO:0010468 GO:0010556 GO:0010557 GO:0010600 GO:0010601 GO:0010604 GO:0010628 GO:0010817 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0032504 GO:0044085 GO:0045893 GO:0045935 GO:0046885 GO:0046886 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071695 GO:0071840 GO:0080090 GO:0090354 GO:0090355 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

339

Amino Acids

37.48

Weight (kDa)

4.59

Isoelectric Point (pI)

57.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28300
fragaria_vesca	FvH4_3g08960 FvH4_3g21641 FvH4_5g20960
malus_domestica	MD00G1115600.v1.1 MD10G1292400.v1.1
prunus_persica	Prupe.4G049500_v2.0.a1 Prupe.4G049500_v2.0.a1 Prupe.4G049500_v2.0.a1
pyrus_communis	pycom05g28900 pycom10g24450
rosa_chinensis	RchiOBHm_Chr5g0008771 RchiOBHm_Chr5g0008831 RchiOBHm_Chr5g0037101
rosa_laevigata	RLG00000031603 RLG00000033751
rosa_multiflora	Rmu_sc0001473.1_g000032 Rmu_sc0018628.1_g000002
rosa_roxburghii	Rroxscaffold_1G00043860 Rroxscaffold_1G00067180 Rroxscaffold_1G00067220 Rroxscaffold_1G00067780 Rroxscaffold_1G00067820
rosa_rugosa	Rorug04G0439000 Rorug04G0439000 Rorug04G0439000 Rorug04G0439500 Rorug04G0439500 Rorug04G0439500 Rorug04G0439600 Rorug04G0439600 Rorug05G0160700
rosa_samantha	Rh5AG067400 Rh5AG067700 Rh5AG252600 Rh5BG064300 Rh5BG064700 Rh5BG254400 Rh5CG075200 Rh5CG075600 Rh5CG075700 Rh5CG286900 Rh5DG061100 Rh5DG061200 Rh5DG061500 Rh5DG262800
rosa_wichuraiana	Rw5G005090 Rw5G006360 Rw5G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1018
AccB7I	CCANNNNNTGG	2 cut(s)	149, 272
AclWI	GGATC	2 cut(s)	785, 948
AcoI	YGGCCR	1 cut(s)	251
AfaI	GTAC	4 cut(s)	134, 167, 458, 701
AfeI	AGCGCT	1 cut(s)	358
AfiI	CCNNNNNNNGG	3 cut(s)	149, 199, 272
AflII	CTTAAG	1 cut(s)	815
AflIII	ACRYGT	1 cut(s)	493
AgsI	TTSAA	4 cut(s)	84, 173, 387, 718
AhdI	GACNNNNNGTC	1 cut(s)	370
AjnI	CCWGG	1 cut(s)	227
AluBI	AGCT	5 cut(s)	163, 177, 831, 867, 881
AluI	AGCT	5 cut(s)	163, 177, 831, 867, 881
Alw21I	GWGCWC	1 cut(s)	923
Alw26I	GTCTC	1 cut(s)	274
AlwI	GGATC	2 cut(s)	785, 948
AlwNI	CAGNNNCTG	2 cut(s)	272, 794
Aor51HI	AGCGCT	1 cut(s)	358
AoxI	GGCC	3 cut(s)	201, 251, 897
ApeKI	GCWGC	5 cut(s)	156, 302, 359, 564, 743
Asp700I	GAANNNNTTC	1 cut(s)	458
AspLEI	GCGC	1 cut(s)	359
AspS9I	GGNCC	2 cut(s)	372, 897
AsuHPI	GGTGA	1 cut(s)	787
AvaII	GGWCC	1 cut(s)	372
BbsI	GAAGAC	1 cut(s)	343
Bbv12I	GWGCWC	1 cut(s)	923
BbvI	GCAGC	5 cut(s)	168, 289, 346, 576, 755
BccI	CCATC	7 cut(s)	21, 316, 388, 496, 539, 842, 925
BceAI	ACGGC	1 cut(s)	577
BciT130I	CCWGG	1 cut(s)	229
BciVI	GTATCC	1 cut(s)	243
BcoDI	GTCTC	1 cut(s)	274
BfaI	CTAG	2 cut(s)	93, 740
BfmI	CTRYAG	1 cut(s)	786
BfoI	RGCGCY	1 cut(s)	360
BfrI	CTTAAG	1 cut(s)	815
BfuI	GTATCC	1 cut(s)	243
BisI	GCNGC	5 cut(s)	157, 303, 360, 565, 744
BlsI	GCNGC	5 cut(s)	158, 304, 361, 566, 745
BmcAI	AGTACT	1 cut(s)	458
Bme1390I	CCNGG	1 cut(s)	229
Bme18I	GGWCC	1 cut(s)	372
BmeRI	GACNNNNNGTC	1 cut(s)	370
BmgT120I	GGNCC	2 cut(s)	372, 897
BmiI	GGNNCC	2 cut(s)	373, 898
BmrFI	CCNGG	1 cut(s)	229
BmsI	GCATC	1 cut(s)	582
BpiI	GAAGAC	1 cut(s)	343
BpmI	CTGGAG	2 cut(s)	294, 631
BsaJI	CCNNGG	3 cut(s)	227, 248, 297
BsaXI	ACNNNNNCTCC	2 cut(s)	629, 659
Bsc4I	CCNNNNNNNGG	3 cut(s)	149, 199, 272
Bse1I	ACTGG	2 cut(s)	236, 266
BseBI	CCWGG	1 cut(s)	229
BseDI	CCNNGG	3 cut(s)	227, 248, 297
BseGI	GGATG	3 cut(s)	98, 327, 663
BseLI	CCNNNNNNNGG	3 cut(s)	149, 199, 272
BseMII	CTCAG	2 cut(s)	221, 492
BseNI	ACTGG	2 cut(s)	236, 266
BseXI	GCAGC	5 cut(s)	168, 289, 346, 576, 755
BsgI	GTGCAG	1 cut(s)	424
BshFI	GGCC	3 cut(s)	203, 253, 899
BsiHKAI	GWGCWC	1 cut(s)	923
BsiSI	CCGG	2 cut(s)	446, 980
BslFI	GGGAC	1 cut(s)	985
BslI	CCNNNNNNNGG	3 cut(s)	149, 199, 272
BsmAI	GTCTC	1 cut(s)	274
BsmFI	GGGAC	1 cut(s)	985
BsnI	GGCC	3 cut(s)	203, 253, 899
Bsp1286I	GDGCHC	1 cut(s)	923
Bsp1407I	TGTACA	1 cut(s)	699
Bsp143I	GATC	4 cut(s)	277, 790, 940, 988
BspANI	GGCC	3 cut(s)	203, 253, 899
BspCNI	CTCAG	2 cut(s)	220, 493
BspLI	GGNNCC	2 cut(s)	373, 898
BspMAI	CTGCAG	1 cut(s)	790
BspPI	GGATC	2 cut(s)	785, 948
BspTI	CTTAAG	1 cut(s)	815
BsrGI	TGTACA	1 cut(s)	699
BsrI	ACTGG	2 cut(s)	236, 266
BssECI	CCNNGG	3 cut(s)	227, 248, 297
BssMI	GATC	4 cut(s)	277, 790, 940, 988
BssT1I	CCWWGG	1 cut(s)	297
Bst2UI	CCWGG	1 cut(s)	229
Bst4CI	ACNGT	5 cut(s)	527, 750, 783, 925, 956
BstAFI	CTTAAG	1 cut(s)	815
BstAPI	GCANNNNNTGC	1 cut(s)	794
BstAUI	TGTACA	1 cut(s)	699
BstC8I	GCNNGC	4 cut(s)	161, 201, 328, 443
BstDEI	CTNAG	2 cut(s)	207, 501
BstF5I	GGATG	3 cut(s)	98, 327, 663
BstH2I	RGCGCY	1 cut(s)	360
BstHHI	GCGC	1 cut(s)	359
BstKTI	GATC	4 cut(s)	280, 793, 943, 991
BstMAI	GTCTC	1 cut(s)	274
BstMBI	GATC	4 cut(s)	277, 790, 940, 988
BstMWI	GCNNNNNNNGC	4 cut(s)	250, 570, 794, 973
BstNI	CCWGG	1 cut(s)	229
BstNSI	RCATGY	1 cut(s)	497
BstSCI	CCNGG	1 cut(s)	227
BstSFI	CTRYAG	1 cut(s)	786
BstV1I	GCAGC	5 cut(s)	168, 289, 346, 576, 755
BstV2I	GAAGAC	1 cut(s)	343
BstX2I	RGATCY	1 cut(s)	790
BstYI	RGATCY	1 cut(s)	790
BsuI	GTATCC	1 cut(s)	243
BsuRI	GGCC	3 cut(s)	203, 253, 899
BtsCI	GGATG	3 cut(s)	98, 327, 663
BtsIMutI	CAGTG	4 cut(s)	523, 746, 779, 930
Cac8I	GCNNGC	4 cut(s)	161, 201, 328, 443
CaiI	CAGNNNCTG	2 cut(s)	272, 794
CfoI	GCGC	1 cut(s)	359
Cfr13I	GGNCC	2 cut(s)	372, 897
CseI	GACGC	1 cut(s)	982
Csp6I	GTAC	4 cut(s)	133, 166, 457, 700
CspCI	CAANNNNNGTGG	2 cut(s)	753, 788
CviAII	CATG	5 cut(s)	46, 494, 640, 804, 1001
CviQI	GTAC	4 cut(s)	133, 166, 457, 700
DdeI	CTNAG	2 cut(s)	207, 501
DpnI	GATC	4 cut(s)	279, 792, 942, 990
DpnII	GATC	4 cut(s)	277, 790, 940, 988
DriI	GACNNNNNGTC	1 cut(s)	370
EaeI	YGGCCR	1 cut(s)	251
Eam1105I	GACNNNNNGTC	1 cut(s)	370
Eco130I	CCWWGG	1 cut(s)	297
Eco147I	AGGCCT	1 cut(s)	203
Eco47I	GGWCC	1 cut(s)	372
Eco47III	AGCGCT	1 cut(s)	358
EcoO109I	RGGNCCY	2 cut(s)	372, 897
EcoRII	CCWGG	1 cut(s)	227
EcoT14I	CCWWGG	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	5 cut(s)	49, 497, 643, 807, 1004
FaqI	GGGAC	1 cut(s)	985
FatI	CATG	5 cut(s)	45, 493, 639, 803, 1000
Fnu4HI	GCNGC	5 cut(s)	157, 303, 360, 565, 744
FokI	GGATG	3 cut(s)	85, 334, 650
Fsp4HI	GCNGC	5 cut(s)	157, 303, 360, 565, 744
FspBI	CTAG	2 cut(s)	93, 740
GlaI	GCGC	1 cut(s)	358
GluI	GCNGC	5 cut(s)	157, 303, 360, 565, 744
GsuI	CTGGAG	2 cut(s)	294, 631
HaeII	RGCGCY	1 cut(s)	360
HaeIII	GGCC	3 cut(s)	203, 253, 899
HapII	CCGG	2 cut(s)	446, 980
HgaI	GACGC	1 cut(s)	982
HhaI	GCGC	1 cut(s)	359
Hin1II	CATG	5 cut(s)	49, 497, 643, 807, 1004
Hin6I	GCGC	1 cut(s)	357
HinP1I	GCGC	1 cut(s)	357
HinfI	GANTC	7 cut(s)	293, 339, 365, 413, 503, 680, 761
HpaII	CCGG	2 cut(s)	446, 980
HphI	GGTGA	1 cut(s)	787
Hpy166II	GTNNAC	2 cut(s)	702, 809
Hpy188I	TCNGA	2 cut(s)	418, 598
Hpy188III	TCNNGA	2 cut(s)	273, 281
Hpy8I	GTNNAC	2 cut(s)	702, 809
HpyAV	CCTTC	5 cut(s)	39, 90, 226, 278, 724
HpyCH4III	ACNGT	5 cut(s)	527, 750, 783, 925, 956
HpyCH4V	TGCA	5 cut(s)	305, 391, 424, 441, 788
HpyF10VI	GCNNNNNNNGC	4 cut(s)	250, 570, 794, 973
HpyF3I	CTNAG	2 cut(s)	207, 501
Hsp92II	CATG	5 cut(s)	49, 497, 643, 807, 1004
HspAI	GCGC	1 cut(s)	357
Kzo9I	GATC	4 cut(s)	277, 790, 940, 988
LmnI	GCTCC	1 cut(s)	836
Lsp1109I	GCAGC	5 cut(s)	168, 289, 346, 576, 755
LweI	GCATC	1 cut(s)	582
MaeI	CTAG	2 cut(s)	93, 740
MaeIII	GTNAC	4 cut(s)	496, 548, 775, 956
MalI	GATC	4 cut(s)	279, 792, 942, 990
MboI	GATC	4 cut(s)	277, 790, 940, 988
MboII	GAAGA	5 cut(s)	348, 734, 737, 767, 940
MflI	RGATCY	1 cut(s)	790
MhlI	GDGCHC	1 cut(s)	923
MluCI	AATT	4 cut(s)	187, 695, 857, 891
MlyI	GAGTC	4 cut(s)	302, 333, 359, 512
MmeI	TCCRAC	2 cut(s)	708, 732
MroXI	GAANNNNTTC	1 cut(s)	458
MseI	TTAA	3 cut(s)	347, 816, 825
MslI	CAYNNNNRTG	2 cut(s)	638, 948
MspA1I	CMGCKG	1 cut(s)	163
MspCI	CTTAAG	1 cut(s)	815
MspI	CCGG	2 cut(s)	446, 980
MspR9I	CCNGG	1 cut(s)	229
MvaI	CCWGG	1 cut(s)	229
MwoI	GCNNNNNNNGC	4 cut(s)	250, 570, 794, 973
NdeII	GATC	4 cut(s)	277, 790, 940, 988
NlaIII	CATG	5 cut(s)	49, 497, 643, 807, 1004
NlaIV	GGNNCC	2 cut(s)	373, 898
NmeAIII	GCCGAG	1 cut(s)	229
NmuCI	GTSAC	1 cut(s)	775
NspI	RCATGY	1 cut(s)	497
PceI	AGGCCT	1 cut(s)	203
PciI	ACATGT	1 cut(s)	493
PdmI	GAANNNNTTC	1 cut(s)	458
PfeI	GAWTC	3 cut(s)	413, 680, 761
PflFI	GACNNNGTC	2 cut(s)	781, 842
PflMI	CCANNNNNTGG	2 cut(s)	149, 272
PkrI	GCNGC	5 cut(s)	158, 304, 361, 566, 745
PleI	GAGTC	4 cut(s)	301, 333, 359, 511
PpsI	GAGTC	4 cut(s)	301, 333, 359, 511
PpuMI	RGGWCCY	1 cut(s)	372
PscI	ACATGT	1 cut(s)	493
PsiI	TTATAA	1 cut(s)	1018
Psp5II	RGGWCCY	1 cut(s)	372
Psp6I	CCWGG	1 cut(s)	227
PspGI	CCWGG	1 cut(s)	227
PspN4I	GGNNCC	2 cut(s)	373, 898
PspPI	GGNCC	2 cut(s)	372, 897
PspPPI	RGGWCCY	1 cut(s)	372
PstI	CTGCAG	1 cut(s)	790
PstNI	CAGNNNCTG	2 cut(s)	272, 794
PsuI	RGATCY	1 cut(s)	790
PsyI	GACNNNGTC	2 cut(s)	781, 842
PvuII	CAGCTG	1 cut(s)	163
RsaI	GTAC	4 cut(s)	134, 167, 458, 701
RsaNI	GTAC	4 cut(s)	133, 166, 457, 700
RseI	CAYNNNNRTG	2 cut(s)	638, 948
SaqAI	TTAA	3 cut(s)	347, 816, 825
SatI	GCNGC	5 cut(s)	157, 303, 360, 565, 744
Sau3AI	GATC	4 cut(s)	277, 790, 940, 988
Sau96I	GGNCC	2 cut(s)	372, 897
ScaI	AGTACT	1 cut(s)	458
SchI	GAGTC	4 cut(s)	302, 333, 359, 512
ScrFI	CCNGG	1 cut(s)	229
SduI	GDGCHC	1 cut(s)	923
SfaNI	GCATC	1 cut(s)	582
SfcI	CTRYAG	1 cut(s)	786
SinI	GGWCC	1 cut(s)	372
SmiMI	CAYNNNNRTG	2 cut(s)	638, 948
SmlI	CTYRAG	1 cut(s)	815
SmoI	CTYRAG	1 cut(s)	815
Sse9I	AATT	4 cut(s)	187, 695, 857, 891
SseBI	AGGCCT	1 cut(s)	203
SspMI	CTAG	2 cut(s)	93, 740
StuI	AGGCCT	1 cut(s)	203
StyD4I	CCNGG	1 cut(s)	227
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	5 cut(s)	527, 750, 783, 925, 956
TaqI	TCGA	2 cut(s)	837, 948
TasI	AATT	4 cut(s)	187, 695, 857, 891
TatI	WGTACW	3 cut(s)	165, 456, 699
TfiI	GAWTC	3 cut(s)	413, 680, 761
Tru1I	TTAA	3 cut(s)	347, 816, 825
Tru9I	TTAA	3 cut(s)	347, 816, 825
TscAI	CASTG	4 cut(s)	530, 753, 786, 930
TseFI	GTSAC	1 cut(s)	775
TseI	GCWGC	5 cut(s)	156, 302, 359, 564, 743
Tsp45I	GTSAC	1 cut(s)	775
TspDTI	ATGAA	8 cut(s)	75, 87, 467, 656, 735, 744, 774, 792
TspRI	CASTG	4 cut(s)	530, 753, 786, 930
Tth111I	GACNNNGTC	2 cut(s)	781, 842
Van91I	CCANNNNNTGG	2 cut(s)	149, 272
Vha464I	CTTAAG	1 cut(s)	815
VpaK11BI	GGWCC	1 cut(s)	372
XceI	RCATGY	1 cut(s)	497
XmnI	GAANNNNTTC	1 cut(s)	458
XspI	CTAG	2 cut(s)	93, 740
ZrmI	AGTACT	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.