Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001669

Physical Location & Seq

Genomic Coordinates Forward (+)

88546602 .. 88547190

Gene Structure 589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00067180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGCACGCCAACAAAGAAGACTTATTCTGAGCACAAGAAATGATGCTCATCCCTCATCTGCTCCTTCTAGAATGGGAGGAGAGAGGGATGCAACTGGTGCTGTTTCTGATGCGCAGAACAACGAACAAGACCTCTACTTGTTCTGCACGCCGGATAAGAGGAAACTGAGATTTTTGTTCAAAAAGGAGCTCAAGAAGAGTGATATTGGATCTTGGGGCAGGATTGTCCTTCCTAAGAAGGAGCTAGGCAGAAAAATACCTTCCCAGCCTCTCTGGCAAGGAAGGAATCGAGTTGATGATCAAGGATGCCCTCTCAAACCAAGAGTGGGGTTTGACATACAAGTTGGCCACTTTTCTCTGCTTACGGATGATAATGTGATAGTTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0010154 GO:0010262 GO:0010344 GO:0010431 GO:0010468 GO:0010556 GO:0010557 GO:0010600 GO:0010601 GO:0010604 GO:0010628 GO:0010817 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0032504 GO:0044085 GO:0045893 GO:0045935 GO:0046885 GO:0046886 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071695 GO:0071840 GO:0080090 GO:0090354 GO:0090355 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

129

Amino Acids

14.64

Weight (kDa)

9.94

Isoelectric Point (pI)

34.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28300
fragaria_vesca	FvH4_3g08960 FvH4_3g21641 FvH4_5g20960
malus_domestica	MD00G1115600.v1.1 MD10G1292400.v1.1
prunus_persica	Prupe.4G049500_v2.0.a1 Prupe.4G049500_v2.0.a1 Prupe.4G049500_v2.0.a1
pyrus_communis	pycom05g28900 pycom10g24450
rosa_chinensis	RchiOBHm_Chr5g0008771 RchiOBHm_Chr5g0008831 RchiOBHm_Chr5g0037101
rosa_laevigata	RLG00000031603 RLG00000033751
rosa_multiflora	Rmu_sc0001473.1_g000032 Rmu_sc0018628.1_g000002
rosa_roxburghii	Rroxscaffold_1G00043860 Rroxscaffold_1G00067180 Rroxscaffold_1G00067220 Rroxscaffold_1G00067780 Rroxscaffold_1G00067820
rosa_rugosa	Rorug04G0439000 Rorug04G0439000 Rorug04G0439000 Rorug04G0439500 Rorug04G0439500 Rorug04G0439500 Rorug04G0439600 Rorug04G0439600 Rorug05G0160700
rosa_samantha	Rh5AG067400 Rh5AG067700 Rh5AG252600 Rh5BG064300 Rh5BG064700 Rh5BG254400 Rh5CG075200 Rh5CG075600 Rh5CG075700 Rh5CG286900 Rh5DG061100 Rh5DG061200 Rh5DG061500 Rh5DG262800
rosa_wichuraiana	Rw5G005090 Rw5G006360 Rw5G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	114
AclWI	GGATC	1 cut(s)	217
AcoI	YGGCCR	1 cut(s)	346
AfiI	CCNNNNNNNGG	1 cut(s)	326
AgsI	TTSAA	1 cut(s)	181
AluBI	AGCT	2 cut(s)	190, 244
AluI	AGCT	2 cut(s)	190, 244
Alw21I	GWGCWC	2 cut(s)	35, 192
AlwI	GGATC	1 cut(s)	217
AoxI	GGCC	1 cut(s)	346
AspLEI	GCGC	1 cut(s)	115
BalI	TGGCCA	1 cut(s)	348
BanII	GRGCYC	1 cut(s)	192
BbsI	GAAGAC	1 cut(s)	25
Bbv12I	GWGCWC	2 cut(s)	35, 192
BclI	TGATCA	1 cut(s)	298
BfaI	CTAG	2 cut(s)	69, 245
BglI	GCCNNNNNGGC	1 cut(s)	274
BmsI	GCATC	4 cut(s)	34, 79, 100, 296
BpiI	GAAGAC	1 cut(s)	25
BpuEI	CTTGAG	1 cut(s)	176
BsaBI	GATNNNNATC	1 cut(s)	48
Bsc4I	CCNNNNNNNGG	1 cut(s)	326
Bse1I	ACTGG	1 cut(s)	100
Bse8I	GATNNNNATC	1 cut(s)	48
BseGI	GGATG	4 cut(s)	49, 94, 311, 373
BseJI	GATNNNNATC	1 cut(s)	48
BseLI	CCNNNNNNNGG	1 cut(s)	326
BseMII	CTCAG	2 cut(s)	20, 158
BseNI	ACTGG	1 cut(s)	100
BseRI	GAGGAG	1 cut(s)	93
BseYI	CCCAGC	1 cut(s)	264
BsgI	GTGCAG	1 cut(s)	130
BshFI	GGCC	1 cut(s)	348
BsiHKAI	GWGCWC	2 cut(s)	35, 192
BsiSI	CCGG	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	326
BsnI	GGCC	1 cut(s)	348
Bsp1286I	GDGCHC	2 cut(s)	35, 192
Bsp143I	GATC	2 cut(s)	209, 298
BspANI	GGCC	1 cut(s)	348
BspCNI	CTCAG	2 cut(s)	21, 159
BspPI	GGATC	1 cut(s)	217
BsrI	ACTGG	1 cut(s)	100
BssMI	GATC	2 cut(s)	209, 298
Bst6I	CTCTTC	1 cut(s)	191
BstAPI	GCANNNNNTGC	1 cut(s)	98
BstC8I	GCNNGC	2 cut(s)	7, 149
BstDEI	CTNAG	3 cut(s)	29, 167, 234
BstF5I	GGATG	4 cut(s)	49, 94, 311, 373
BstHHI	GCGC	1 cut(s)	115
BstKTI	GATC	2 cut(s)	212, 301
BstMBI	GATC	2 cut(s)	209, 298
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 274
BstV2I	GAAGAC	1 cut(s)	25
BstX2I	RGATCY	1 cut(s)	209
BstYI	RGATCY	1 cut(s)	209
BsuRI	GGCC	1 cut(s)	348
BtsCI	GGATG	4 cut(s)	49, 94, 311, 373
Cac8I	GCNNGC	2 cut(s)	7, 149
CfoI	GCGC	1 cut(s)	115
CviJI	RGCY	4 cut(s)	190, 244, 268, 348
CviKI_1	RGCY	4 cut(s)	190, 244, 268, 348
DdeI	CTNAG	3 cut(s)	29, 167, 234
DpnI	GATC	2 cut(s)	211, 300
DpnII	GATC	2 cut(s)	209, 298
EaeI	YGGCCR	1 cut(s)	346
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
Ecl136II	GAGCTC	1 cut(s)	190
Eco24I	GRGCYC	1 cut(s)	192
Eco53kI	GAGCTC	1 cut(s)	190
EcoICRI	GAGCTC	1 cut(s)	190
EcoT38I	GRGCYC	1 cut(s)	192
FaiI	YATR	1 cut(s)	338
FbaI	TGATCA	1 cut(s)	298
FokI	GGATG	4 cut(s)	36, 101, 318, 380
FriOI	GRGCYC	1 cut(s)	192
FspBI	CTAG	2 cut(s)	69, 245
FspI	TGCGCA	1 cut(s)	114
GlaI	GCGC	1 cut(s)	114
GsaI	CCCAGC	1 cut(s)	268
HaeIII	GGCC	1 cut(s)	348
HapII	CCGG	1 cut(s)	152
HhaI	GCGC	1 cut(s)	115
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HinfI	GANTC	1 cut(s)	286
HpaI	GTTAAC	1 cut(s)	385
HpaII	CCGG	1 cut(s)	152
Hpy166II	GTNNAC	1 cut(s)	385
Hpy188I	TCNGA	2 cut(s)	30, 109
Hpy188III	TCNNGA	2 cut(s)	69, 193
Hpy8I	GTNNAC	1 cut(s)	385
HpyAV	CCTTC	5 cut(s)	75, 232, 239, 270, 276
HpyCH4V	TGCA	2 cut(s)	92, 147
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 274
HpyF3I	CTNAG	3 cut(s)	29, 167, 234
HspAI	GCGC	1 cut(s)	113
Ksp22I	TGATCA	1 cut(s)	298
KspAI	GTTAAC	1 cut(s)	385
Kzo9I	GATC	2 cut(s)	209, 298
LmnI	GCTCC	3 cut(s)	67, 187, 241
LpnPI	CCDG	5 cut(s)	81, 165, 205, 259, 278
LweI	GCATC	4 cut(s)	34, 79, 100, 296
MaeI	CTAG	2 cut(s)	69, 245
MalI	GATC	2 cut(s)	211, 300
MboI	GATC	2 cut(s)	209, 298
MboII	GAAGA	2 cut(s)	30, 208
MflI	RGATCY	1 cut(s)	209
MhlI	GDGCHC	2 cut(s)	35, 192
MlsI	TGGCCA	1 cut(s)	348
MluNI	TGGCCA	1 cut(s)	348
MnlI	CCTC	7 cut(s)	64, 71, 78, 143, 153, 279, 321
Mox20I	TGGCCA	1 cut(s)	348
MscI	TGGCCA	1 cut(s)	348
MseI	TTAA	1 cut(s)	384
Msp20I	TGGCCA	1 cut(s)	348
MspI	CCGG	1 cut(s)	152
MwoI	GCNNNNNNNGC	2 cut(s)	98, 274
NdeII	GATC	2 cut(s)	209, 298
NsbI	TGCGCA	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	286
Psp124BI	GAGCTC	1 cut(s)	192
PspFI	CCCAGC	1 cut(s)	264
PsuI	RGATCY	1 cut(s)	209
SacI	GAGCTC	1 cut(s)	192
SaqAI	TTAA	1 cut(s)	384
Sau3AI	GATC	2 cut(s)	209, 298
SduI	GDGCHC	2 cut(s)	35, 192
SetI	ASST	4 cut(s)	135, 192, 246, 262
SfaNI	GCATC	4 cut(s)	34, 79, 100, 296
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
SspMI	CTAG	2 cut(s)	69, 245
SstI	GAGCTC	1 cut(s)	192
TaqI	TCGA	1 cut(s)	289
TfiI	GAWTC	1 cut(s)	286
Tru1I	TTAA	1 cut(s)	384
Tru9I	TTAA	1 cut(s)	384
TspGWI	ACGGA	1 cut(s)	380
XbaI	TCTAGA	1 cut(s)	68
XspI	CTAG	2 cut(s)	69, 245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.