Prupe.4G049500_v2.0.a1

B3 domain-containing transcription factor

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
2366720 .. 2374724
8005 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G049500.3

Sequence Viewer

Length: 1497 bp
ATGGACAACTTCCACCCACCTTCCATCCCCTCCACATCAACCATAACCTCCGCTCCCCAAGAACAACATTCACAGTTGTCCATTTGTGAACCAATGAGCTGTTCCCCTTCAACAACTTGTAGTCCTTCAACCACTCAGTACTATTGTTATCCGGCACAGTATCTAGCACCAAATCCGGGCCTGCAATTCCAATATGCATATCCTTATCAGCAGGCCGGTCAGCCCATGTATCCGTTCCTGGTCAGTGGCCAGCCAAATGTGGTAGTGTCCACAGAGCAGGACAGCCTGGCCAGATCAGGATGGACTCTGGATGCATTAGTCTCCAAGGCGGCGAGAAAGGAGAGAAGGATGGCCAGACAGAGGAGTCTCAGTTTGAGCAGAAACAATGCCAATGCTGCTGCTTCTTCTGAGTCTTCTTCTCCATCTTCAAGGAGGCATGCTCCATTTCCGTGGAATGAGGATGATGATCAGGGAAGTATGTCCACGTCATCGTCTGGTGCTGGTACTGATATGCAGAACATCAACAGACACCTCTACACGTTCTGCACGCCGGATAACAAGAAACTGAGAGTGATGTTTAAGAAGGAGTTGAAGAACAGTGATGTTGGATCTTTGGGCAGGATTGTCCTTCCAAAGAAAGAAGCAGAGGAAAACCTTCCAATGCTCTCTGACAAAGAAGGCATCCAGCTGATGATCAGAGATGTATATTCTGACCAGGAGTGGGGCTTGAAGTATAAGTATTGGTCAAATAACAAAAGTCGAATGTACCTCTTAGAGAACACAGGCGACTTTGTTAAGCAACACAAGTTGGAGGTGGGAGATTGTATTTGTCTTTTGGAGGATGAAGACAAGAACCTTTACATCTCCACAGAAACGAGAGCAGGATCAATACATGCCAAGCCCCCCTCACGCATCAACAACAACAACAACAACAACAACAACACCGACCGTAAAGCCAACAACTCAAACAGCAACACCACCGCCGAAGGCAACACTCCGGACTCCAACCCAAACTACGCCGATGCCAACACCAACACCAATGCCAAAAGCTATAGCAACAACCACAACGCTCCCGCTGACATACCTATTCCTTTGGCGTATACCTATGTAGCTAGGGATGAAGAAGATGCATCATCATCATCTCTAGCACTACTTGTACAACAACTTCAGAAAGAGCAAGAAGCTAACACCATAATTGCATTGTCCATGACGTGTGCTTCTTCGCCGCACATACAATGTGAGGAAGCTAACGACGCCATTGGACATATCGAAACCTCTACGCAACCATCTACATTGGCGGGGGTCGAGCCTGCCCCATCACCATCACCGTCACAGAGGAGAGCAATGACGAGGATGGCGAACGATGATCAGTTTGAGACCGATGACTGCTACAAAGGCCTTGGGACACTCCCGGAAGTTTATCGCTATAAGTATTGTGATGACTTTTGTCTTTTTGATTATAACGGCAGCATAACAACGGACGACGACAAGTCGTAG

Protein Analysis

499

Amino Acids

55.26

Weight (kDa)

5.09

Isoelectric Point (pI)

55.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1461
AasI GACNNNNNNGTC 1 cut(s) 363
AccBSI CCGCTC 1 cut(s) 53
AccI GTMKAC 1 cut(s) 1100
AccIII TCCGGA 1 cut(s) 997
AciI CCGC 6 cut(s) 51, 329, 981, 1074, 1226, 1298
AclWI GGATC 2 cut(s) 616, 892
AcoI YGGCCR 3 cut(s) 247, 288, 351
AcuI CTGAAG 1 cut(s) 1151
AcyI GRCGYC 1 cut(s) 1254
AfaI GTAC 4 cut(s) 140, 505, 767, 1158
AfiI CCNNNNNNNGG 3 cut(s) 176, 360, 721
AflIII ACRYGT 2 cut(s) 537, 1211
AgsI TTSAA 5 cut(s) 111, 129, 429, 592, 730
AhdI GACNNNNNGTC 1 cut(s) 1489
AjiI CACGTC 2 cut(s) 486, 1212
AjnI CCWGG 3 cut(s) 237, 285, 714
AjuI GAANNNNNNNTTGG 2 cut(s) 85, 117
AluBI AGCT 6 cut(s) 99, 688, 1050, 1112, 1184, 1247
AluI AGCT 6 cut(s) 99, 688, 1050, 1112, 1184, 1247
Alw26I GTCTC 3 cut(s) 325, 371, 1370
AlwI GGATC 2 cut(s) 616, 892
Aor13HI TCCGGA 1 cut(s) 997
AoxI GGCC 6 cut(s) 178, 213, 247, 288, 351, 1396
ApeKI GCWGC 3 cut(s) 395, 398, 1467
Asp700I GAANNNNTTC 1 cut(s) 654
AspS9I GGNCC 1 cut(s) 178
AsuC2I CCSGG 2 cut(s) 177, 1412
AsuHPI GGTGA 2 cut(s) 1311, 1317
BalI TGGCCA 3 cut(s) 249, 290, 353
BarI GAAGNNNNNNTAC 2 cut(s) 1149, 1181
BbsI GAAGAC 2 cut(s) 405, 852
BbvI GCAGC 3 cut(s) 382, 385, 1479
BccI CCATC 8 cut(s) 32, 294, 343, 430, 1294, 1324, 1330, 1348
BceAI ACGGC 1 cut(s) 1480
BciT130I CCWGG 3 cut(s) 239, 287, 716
BciVI GTATCC 1 cut(s) 240
BclI TGATCA 3 cut(s) 466, 693, 1366
BcnI CCSGG 2 cut(s) 177, 1412
BcoDI GTCTC 3 cut(s) 325, 371, 1370
BfaI CTAG 3 cut(s) 164, 1113, 1145
BfmI CTRYAG 1 cut(s) 1051
BfuI GTATCC 1 cut(s) 240
BisI GCNGC 5 cut(s) 330, 396, 399, 1226, 1468
BlsI GCNGC 5 cut(s) 331, 397, 400, 1227, 1469
BmcAI AGTACT 1 cut(s) 140
Bme1390I CCNGG 5 cut(s) 177, 239, 287, 716, 1412
BmeRI GACNNNNNGTC 1 cut(s) 1489
BmgBI CACGTC 2 cut(s) 486, 1212
BmgT120I GGNCC 1 cut(s) 178
BmrFI CCNGG 5 cut(s) 177, 239, 287, 716, 1412
BmsI GCATC 6 cut(s) 301, 690, 921, 1012, 1117, 1139
BoxI GACNNNNGTC 1 cut(s) 1446
BpiI GAAGAC 2 cut(s) 405, 852
BplI GAGNNNNNCTC 2 cut(s) 424, 456
BpuMI CCSGG 2 cut(s) 177, 1412
BsaBI GATNNNNATC 1 cut(s) 465
BsaHI GRCGYC 1 cut(s) 1254
BsaI GGTCTC 1 cut(s) 1370
BsaJI CCNNGG 3 cut(s) 324, 449, 1399
BsaWI WCCGGW 1 cut(s) 997
BsaXI ACNNNNNCTCC 4 cut(s) 37, 67, 355, 385
Bsc4I CCNNNNNNNGG 3 cut(s) 176, 360, 721
Bse118I RCCGGY 1 cut(s) 215
Bse3DI GCAATG 1 cut(s) 1350
Bse8I GATNNNNATC 1 cut(s) 465
BseAI TCCGGA 1 cut(s) 997
BseBI CCWGG 3 cut(s) 239, 287, 716
BseDI CCNNGG 3 cut(s) 324, 449, 1399
BseGI GGATG 9 cut(s) 24, 305, 316, 354, 466, 681, 847, 1123, 1359
BseJI GATNNNNATC 1 cut(s) 465
BseLI CCNNNNNNNGG 3 cut(s) 176, 360, 721
BseMI GCAATG 1 cut(s) 1350
BseMII CTCAG 4 cut(s) 149, 382, 399, 557
BseRI GAGGAG 2 cut(s) 376, 1351
BseXI GCAGC 3 cut(s) 382, 385, 1479
BsgI GTGCAG 1 cut(s) 529
Bsh1285I CGRYCG 1 cut(s) 949
BshFI GGCC 6 cut(s) 180, 215, 249, 290, 353, 1398
BsiEI CGRYCG 1 cut(s) 949
BsiSI CCGG 6 cut(s) 152, 176, 216, 551, 998, 1412
BslFI GGGAC 1 cut(s) 1417
BslI CCNNNNNNNGG 3 cut(s) 176, 360, 721
BsmAI GTCTC 3 cut(s) 325, 371, 1370
BsmFI GGGAC 1 cut(s) 1417
BsnI GGCC 6 cut(s) 180, 215, 249, 290, 353, 1398
Bso31I GGTCTC 1 cut(s) 1370
Bsp13I TCCGGA 1 cut(s) 997
Bsp1407I TGTACA 1 cut(s) 1156
Bsp143I GATC 6 cut(s) 293, 466, 608, 693, 884, 1366
BspACI CCGC 6 cut(s) 51, 329, 981, 1074, 1226, 1298
BspANI GGCC 6 cut(s) 180, 215, 249, 290, 353, 1398
BspCNI CTCAG 4 cut(s) 148, 381, 400, 558
BspEI TCCGGA 1 cut(s) 997
BspPI GGATC 2 cut(s) 616, 892
BspTNI GGTCTC 1 cut(s) 1370
BsrBI CCGCTC 1 cut(s) 53
BsrDI GCAATG 1 cut(s) 1350
BsrFI RCCGGY 1 cut(s) 215
BsrGI TGTACA 1 cut(s) 1156
BssAI RCCGGY 1 cut(s) 215
BssECI CCNNGG 3 cut(s) 324, 449, 1399
BssMI GATC 6 cut(s) 293, 466, 608, 693, 884, 1366
BssNAI GTATAC 1 cut(s) 1101
BssNI GRCGYC 1 cut(s) 1254
BssT1I CCWWGG 2 cut(s) 324, 1399
Bst1107I GTATAC 1 cut(s) 1101
Bst2UI CCWGG 3 cut(s) 239, 287, 716
Bst4CI ACNGT 5 cut(s) 75, 159, 599, 950, 1329
BstACI GRCGYC 1 cut(s) 1254
BstAUI TGTACA 1 cut(s) 1156
BstC8I GCNNGC 6 cut(s) 182, 213, 251, 438, 548, 1311
BstDEI CTNAG 5 cut(s) 135, 368, 408, 566, 772
BstDSI CCRYGG 1 cut(s) 449
BstF5I GGATG 9 cut(s) 24, 305, 316, 354, 466, 681, 847, 1123, 1359
BstKTI GATC 6 cut(s) 296, 469, 611, 696, 887, 1369
BstMAI GTCTC 3 cut(s) 325, 371, 1370
BstMBI GATC 6 cut(s) 293, 466, 608, 693, 884, 1366
BstMCI CGRYCG 1 cut(s) 949
BstMWI GCNNNNNNNGC 3 cut(s) 395, 1253, 1395
BstNI CCWGG 3 cut(s) 239, 287, 716
BstNSI RCATGY 2 cut(s) 440, 896
BstPAI GACNNNNGTC 1 cut(s) 1446
BstSCI CCNGG 5 cut(s) 175, 237, 285, 714, 1410
BstSFI CTRYAG 1 cut(s) 1051
BstV1I GCAGC 3 cut(s) 382, 385, 1479
BstV2I GAAGAC 2 cut(s) 405, 852
BstX2I RGATCY 1 cut(s) 608
BstXI CCANNNNNNTGG 1 cut(s) 450
BstYI RGATCY 1 cut(s) 608
BstZ17I GTATAC 1 cut(s) 1101
BsuI GTATCC 1 cut(s) 240
BsuRI GGCC 6 cut(s) 180, 215, 249, 290, 353, 1398
BtgI CCRYGG 1 cut(s) 449
BtrI CACGTC 2 cut(s) 486, 1212
BtsCI GGATG 9 cut(s) 24, 305, 316, 354, 466, 681, 847, 1123, 1359
BtsIMutI CAGTG 2 cut(s) 250, 604
Cac8I GCNNGC 6 cut(s) 182, 213, 251, 438, 548, 1311
Cfr10I RCCGGY 1 cut(s) 215
Cfr13I GGNCC 1 cut(s) 178
CseI GACGC 1 cut(s) 1262
Csp6I GTAC 4 cut(s) 139, 504, 766, 1157
CviAII CATG 4 cut(s) 226, 437, 893, 1207
CviQI GTAC 4 cut(s) 139, 504, 766, 1157
DdeI CTNAG 5 cut(s) 135, 368, 408, 566, 772
DpnI GATC 6 cut(s) 295, 468, 610, 695, 886, 1368
DpnII GATC 6 cut(s) 293, 466, 608, 693, 884, 1366
DrdI GACNNNNNNGTC 1 cut(s) 363
DriI GACNNNNNGTC 1 cut(s) 1489
DseDI GACNNNNNNGTC 1 cut(s) 363
EaeI YGGCCR 3 cut(s) 247, 288, 351
Eam1105I GACNNNNNGTC 1 cut(s) 1489
Eco130I CCWWGG 2 cut(s) 324, 1399
Eco147I AGGCCT 1 cut(s) 1398
Eco31I GGTCTC 1 cut(s) 1370
Eco57I CTGAAG 1 cut(s) 1151
EcoRII CCWGG 3 cut(s) 237, 285, 714
EcoT14I CCWWGG 2 cut(s) 324, 1399
EcoT22I ATGCAT 3 cut(s) 199, 316, 1132
ErhI CCWWGG 2 cut(s) 324, 1399
FaeI CATG 4 cut(s) 229, 440, 896, 1210
FaqI GGGAC 1 cut(s) 1417
FatI CATG 4 cut(s) 225, 436, 892, 1206
FauI CCCGC 2 cut(s) 1081, 1291
FbaI TGATCA 3 cut(s) 466, 693, 1366
FblI GTMKAC 1 cut(s) 1100
Fnu4HI GCNGC 5 cut(s) 330, 396, 399, 1226, 1468
FokI GGATG 9 cut(s) 11, 312, 323, 361, 473, 668, 854, 1130, 1366
Fsp4HI GCNGC 5 cut(s) 330, 396, 399, 1226, 1468
FspBI CTAG 3 cut(s) 164, 1113, 1145
GluI GCNGC 5 cut(s) 330, 396, 399, 1226, 1468
HaeIII GGCC 6 cut(s) 180, 215, 249, 290, 353, 1398
HapII CCGG 6 cut(s) 152, 176, 216, 551, 998, 1412
HgaI GACGC 1 cut(s) 1262
Hin1I GRCGYC 1 cut(s) 1254
Hin1II CATG 4 cut(s) 229, 440, 896, 1210
HinfI GANTC 4 cut(s) 304, 364, 410, 1001
HpaII CCGG 6 cut(s) 152, 176, 216, 551, 998, 1412
HphI GGTGA 2 cut(s) 1311, 1317
Hpy166II GTNNAC 4 cut(s) 89, 270, 483, 1101
Hpy188I TCNGA 5 cut(s) 409, 670, 698, 712, 1170
Hpy188III TCNNGA 3 cut(s) 297, 308, 998
Hpy8I GTNNAC 4 cut(s) 89, 270, 483, 1101
Hpy99I CGWCG 2 cut(s) 1256, 1487
HpyAV CCTTC 9 cut(s) 30, 117, 135, 339, 577, 638, 665, 671, 980
HpyCH4III ACNGT 5 cut(s) 75, 159, 599, 950, 1329
HpyCH4IV ACGT 3 cut(s) 485, 539, 1211
HpyCH4V TGCA 7 cut(s) 184, 197, 314, 514, 546, 1130, 1199
HpyF10VI GCNNNNNNNGC 3 cut(s) 395, 1253, 1395
HpyF3I CTNAG 5 cut(s) 135, 368, 408, 566, 772
HpySE526I ACGT 3 cut(s) 485, 539, 1211
Hsp92I GRCGYC 1 cut(s) 1254
Hsp92II CATG 4 cut(s) 229, 440, 896, 1210
Kpn2I TCCGGA 1 cut(s) 997
Ksp22I TGATCA 3 cut(s) 466, 693, 1366
Kzo9I GATC 6 cut(s) 293, 466, 608, 693, 884, 1366
LmnI GCTCC 3 cut(s) 58, 445, 1075
Lsp1109I GCAGC 3 cut(s) 382, 385, 1479
LweI GCATC 6 cut(s) 301, 690, 921, 1012, 1117, 1139
MaeI CTAG 3 cut(s) 164, 1113, 1145
MaeII ACGT 3 cut(s) 485, 539, 1211
MaeIII GTNAC 1 cut(s) 1329
MalI GATC 6 cut(s) 295, 468, 610, 695, 886, 1368
MbiI CCGCTC 1 cut(s) 53
MboI GATC 6 cut(s) 293, 466, 608, 693, 884, 1366
MboII GAAGA 9 cut(s) 396, 405, 408, 417, 604, 857, 1133, 1136, 1212
MflI RGATCY 1 cut(s) 608
MlsI TGGCCA 3 cut(s) 249, 290, 353
MluCI AATT 2 cut(s) 185, 1194
MluNI TGGCCA 3 cut(s) 249, 290, 353
MlyI GAGTC 4 cut(s) 298, 373, 419, 995
MmeI TCCRAC 3 cut(s) 586, 789, 1029
Mox20I TGGCCA 3 cut(s) 249, 290, 353
Mph1103I ATGCAT 3 cut(s) 199, 316, 1132
MroI TCCGGA 1 cut(s) 997
MroXI GAANNNNTTC 1 cut(s) 654
MscI TGGCCA 3 cut(s) 249, 290, 353
MseI TTAA 2 cut(s) 579, 795
MslI CAYNNNNRTG 1 cut(s) 448
Msp20I TGGCCA 3 cut(s) 249, 290, 353
MspA1I CMGCKG 2 cut(s) 688, 1076
MspI CCGG 6 cut(s) 152, 176, 216, 551, 998, 1412
MspR9I CCNGG 5 cut(s) 177, 239, 287, 716, 1412
MvaI CCWGG 3 cut(s) 239, 287, 716
MwoI GCNNNNNNNGC 3 cut(s) 395, 1253, 1395
NciI CCSGG 2 cut(s) 177, 1412
NdeII GATC 6 cut(s) 293, 466, 608, 693, 884, 1366
NlaIII CATG 4 cut(s) 229, 440, 896, 1210
NmuCI GTSAC 1 cut(s) 1329
NsiI ATGCAT 3 cut(s) 199, 316, 1132
NspI RCATGY 2 cut(s) 440, 896
PaeI GCATGC 1 cut(s) 440
PceI AGGCCT 1 cut(s) 1398
PcsI WCGNNNNNNNCGW 1 cut(s) 1355
PdmI GAANNNNTTC 1 cut(s) 654
PfoI TCCNGGA 1 cut(s) 1410
PkrI GCNGC 5 cut(s) 331, 397, 400, 1227, 1469
PleI GAGTC 4 cut(s) 298, 372, 418, 995
PpsI GAGTC 4 cut(s) 298, 372, 418, 995
PshAI GACNNNNGTC 1 cut(s) 1446
PsiI TTATAA 1 cut(s) 1461
Psp6I CCWGG 3 cut(s) 237, 285, 714
PspGI CCWGG 3 cut(s) 237, 285, 714
PspPI GGNCC 1 cut(s) 178
PsuI RGATCY 1 cut(s) 608
PvuII CAGCTG 1 cut(s) 688
RsaI GTAC 4 cut(s) 140, 505, 767, 1158
RsaNI GTAC 4 cut(s) 139, 504, 766, 1157
RseI CAYNNNNRTG 1 cut(s) 448
SaqAI TTAA 2 cut(s) 579, 795
SatI GCNGC 5 cut(s) 330, 396, 399, 1226, 1468
Sau3AI GATC 6 cut(s) 293, 466, 608, 693, 884, 1366
Sau96I GGNCC 1 cut(s) 178
ScaI AGTACT 1 cut(s) 140
SchI GAGTC 4 cut(s) 298, 373, 419, 995
ScrFI CCNGG 5 cut(s) 177, 239, 287, 716, 1412
SfaNI GCATC 6 cut(s) 301, 690, 921, 1012, 1117, 1139
SfcI CTRYAG 1 cut(s) 1051
SmiMI CAYNNNNRTG 1 cut(s) 448
SphI GCATGC 1 cut(s) 440
Sse9I AATT 2 cut(s) 185, 1194
SseBI AGGCCT 1 cut(s) 1398
SsiI CCGC 6 cut(s) 51, 329, 981, 1074, 1226, 1298
SspMI CTAG 3 cut(s) 164, 1113, 1145
StuI AGGCCT 1 cut(s) 1398
StyD4I CCNGG 5 cut(s) 175, 237, 285, 714, 1410
StyI CCWWGG 2 cut(s) 324, 1399
TaaI ACNGT 5 cut(s) 75, 159, 599, 950, 1329
TaiI ACGT 3 cut(s) 488, 542, 1214
TaqI TCGA 3 cut(s) 760, 1269, 1305
TaqII GACCGA 1 cut(s) 1394
TasI AATT 2 cut(s) 185, 1194
TatI WGTACW 2 cut(s) 138, 1156
TauI GCSGC 2 cut(s) 332, 1228
Tru1I TTAA 2 cut(s) 579, 795
Tru9I TTAA 2 cut(s) 579, 795
TscAI CASTG 2 cut(s) 250, 604
TseFI GTSAC 1 cut(s) 1329
TseI GCWGC 3 cut(s) 395, 398, 1467
Tsp45I GTSAC 1 cut(s) 1329
TspDTI ATGAA 2 cut(s) 858, 1134
TspGWI ACGGA 3 cut(s) 222, 438, 1493
TspRI CASTG 2 cut(s) 250, 604
XceI RCATGY 2 cut(s) 440, 896
XmiI GTMKAC 1 cut(s) 1100
XmnI GAANNNNTTC 1 cut(s) 654
XspI CTAG 3 cut(s) 164, 1113, 1145
ZrmI AGTACT 1 cut(s) 140
Zsp2I ATGCAT 3 cut(s) 199, 316, 1132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.