Rorug04G0439000

B3 domain-containing transcription factor

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
59604606 .. 59608342
3737 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0439000.1

Sequence Viewer

Length: 1620 bp
ATGGGTGAATCAATAGTGGGTTTTCCAAAAGATGCTGATAAGATGGGAGAGATAGCTGGTACAGATTCATCAAATCCTTCTCTGGAAGTGTCGGTTTCATTTGGTAGGTTTGAGAATGATTCATTATCTTGGGAGAAATGGTCGGCATTTTCGCCAAATAAGTACTTGGAAGAAGTTGAGAAGTGTGCTACTCCTGGTTCGGTAGCTCAGAAAAGGGCTTATTTTGAAGCTCATTACAAGAGGATAGCTGCTCGAAAAGCCGAGGAGCTTCTGGAACAAGAGAAGCAAATGCAAGATGATGATCCCTTAAAGTCAGATGATCAAAATAATGGAGATCAGATCTGTTGTGGTACGGATTATGGAATTGATGTAGCTACCAGTCAAACTAGTGCTCAAGCAAATAGTCAAGAGCCCAATATAGAGAATGGGATGAGCAGTACTCATGTGGAAGATCTCAAGGAGGATGATGAGGATGTTTTCACTATGGAATGTCAAACATCATCGATTGAGGGTAGAGAAATAGAGGAAACTGATAGCGGAGTGGTTAGTCCGAAGACTCCAAAGCTGAACAGACCAGAAGAACTTGTTTTGGTAAAAGAAGTGGAAACCATCACTGCTGACACTCAAGAAACAATACAGGAAGTTCCAAAGACTTTGGACAGTGATACAGGCAATGCTCCAGAAGTTAAAGAGGAAAAAGCGAGGTTCGATCTTCAGAAGAGATCTCAGAAGGTTACTCCAGTGAGCAAGGAGAGGACAGTGGCAAAGGCCAAGAAGAAATCAATTTCACCAATGACTAAAACACCTCAGAATCCGACCCCTAGAGTGTCAAAGTTACCACAGAATTCCACCCCTAGAGTGTCAAAGATACCGCAGAATACTACCCCTAGAGTGTCAAAGATACTGCAGAATACCACCCCTAGTGTGTCAAAGCCAATATCAGCTTCTATCGGAGCAAAATCTGCACCAAGATCCTCAGTAACGAAGGCCAATGGTTCATCTTTAACTAGGAGCACAAATCAGTCAAGTGAAAAAACCAAGAAAGTTCCTCCTAAATCTCTGCACATGTCACTCAGTTTCAATCCTAAAAAGTCTGATTCAGCTACAGAAACTGTGGTTACAGCTAGAAAATCTTTGATTATGGAGCAAATGGGTGATAAGGACATTGTCAAACGAGCATTCAAGACATTTCAAAACAGTGTCAACCAATTGAAATCCTCTAATGAAGAGAAACCTTCAGCACCAATGCAGCTCCCTACAAAGTCGAAAGAACCAAAGGTTTCCACTCCTATGCCTCTGCCGAAAGACACTGGAGGGTCACTCAAAACGAGTTATCAGGATAAAACAAATGCCAAGGCTGCTCCATCATCTTTTGGCCTGAGAAGTGAAGAAAGAGCAGAGAAACGGAAGGAGTTAACAAACAACTTGGCGAAACCCAATGCCAGAGATACAGAGAGAGCACACTTCCAGCCAAAGTCAAAGGAGCAAAAGGAGGCAGAGATAAAGCTAAGACAGACTCTTAAGTTCAAGGCTACACCAACGCCTGATTCTTATCGGGGACAAAAGTTATCGAAAAGTACTCTAGAAAAGGAGGGTCCTAAGAAAGAAACGCTTCGGTGA

Protein Analysis

539

Amino Acids

59.56

Weight (kDa)

9.04

Isoelectric Point (pI)

45.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPX2 PF06886 458 - 526 1e-09 Targeting protein for Xklp2 (TPX2) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 537, 872
AclWI GGATC 2 cut(s) 296, 966
AcsI RAATTY 1 cut(s) 844
AcuI CTGAAG 2 cut(s) 698, 1221
AfaI GTAC 5 cut(s) 61, 164, 352, 439, 1579
AflII CTTAAG 1 cut(s) 1520
AflIII ACRYGT 1 cut(s) 1065
AgsI TTSAA 6 cut(s) 227, 1081, 1183, 1193, 1213, 1528
AhlI ACTAGT 1 cut(s) 386
AjnI CCWGG 1 cut(s) 193
AjuI GAANNNNNNNTTGG 4 cut(s) 928, 960, 1531, 1563
Alw21I GWGCWC 3 cut(s) 394, 1016, 1462
AlwI GGATC 2 cut(s) 296, 966
AlwNI CAGNNNCTG 1 cut(s) 1112
AoxI GGCC 3 cut(s) 768, 987, 1375
ApeKI GCWGC 3 cut(s) 248, 1249, 1358
ApoI RAATTY 1 cut(s) 844
Asp700I GAANNNNTTC 1 cut(s) 1611
AspS9I GGNCC 1 cut(s) 1595
AsuHPI GGTGA 3 cut(s) 17, 780, 1166
AvaII GGWCC 1 cut(s) 1595
BanII GRGCYC 1 cut(s) 414
BbsI GAAGAC 1 cut(s) 560
Bbv12I GWGCWC 3 cut(s) 394, 1016, 1462
BbvI GCAGC 3 cut(s) 235, 1261, 1345
BccI CCATC 3 cut(s) 37, 617, 1372
BciT130I CCWGG 1 cut(s) 195
BclI TGATCA 1 cut(s) 319
BcuI ACTAGT 1 cut(s) 386
BfaI CTAG 8 cut(s) 387, 822, 855, 888, 921, 1008, 1125, 1583
BfmI CTRYAG 2 cut(s) 905, 1104
BfrI CTTAAG 1 cut(s) 1520
BglII AGATCT 3 cut(s) 339, 451, 722
BisI GCNGC 3 cut(s) 249, 1250, 1359
BlsI GCNGC 3 cut(s) 250, 1251, 1360
BmcAI AGTACT 3 cut(s) 164, 439, 1579
Bme1390I CCNGG 1 cut(s) 195
Bme18I GGWCC 1 cut(s) 1595
BmgT120I GGNCC 1 cut(s) 1595
BmiI GGNNCC 1 cut(s) 1596
BmrFI CCNGG 1 cut(s) 195
BmsI GCATC 1 cut(s) 22
BpiI GAAGAC 1 cut(s) 560
BplI GAGNNNNNCTC 4 cut(s) 424, 456, 1305, 1337
BpmI CTGGAG 3 cut(s) 663, 723, 1332
BpuEI CTTGAG 3 cut(s) 378, 440, 609
Bsa29I ATCGAT 1 cut(s) 503
BsaBI GATNNNNATC 2 cut(s) 300, 1551
BsaJI CCNNGG 2 cut(s) 261, 1353
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bse1I ACTGG 3 cut(s) 378, 740, 1315
Bse3DI GCAATG 1 cut(s) 679
Bse8I GATNNNNATC 2 cut(s) 300, 1551
BseBI CCWGG 1 cut(s) 195
BseCI ATCGAT 1 cut(s) 503
BseDI CCNNGG 2 cut(s) 261, 1353
BseGI GGATG 3 cut(s) 435, 469, 478
BseJI GATNNNNATC 2 cut(s) 300, 1551
BseMI GCAATG 1 cut(s) 679
BseMII CTCAG 6 cut(s) 221, 740, 821, 990, 1087, 1370
BseNI ACTGG 3 cut(s) 378, 740, 1315
BseRI GAGGAG 1 cut(s) 278
BseXI GCAGC 3 cut(s) 235, 1261, 1345
BsgI GTGCAG 2 cut(s) 948, 1046
BshFI GGCC 3 cut(s) 770, 989, 1377
BshVI ATCGAT 1 cut(s) 503
BsiHKAI GWGCWC 3 cut(s) 394, 1016, 1462
BslFI GGGAC 1 cut(s) 1572
BsmFI GGGAC 1 cut(s) 1572
BsmI GAATGC 1 cut(s) 1178
BsnI GGCC 3 cut(s) 770, 989, 1377
Bsp1286I GDGCHC 4 cut(s) 394, 414, 1016, 1462
Bsp143I GATC 8 cut(s) 301, 319, 334, 339, 451, 709, 722, 971
BspACI CCGC 2 cut(s) 537, 872
BspANI GGCC 3 cut(s) 770, 989, 1377
BspCNI CTCAG 6 cut(s) 220, 739, 820, 989, 1086, 1371
BspDI ATCGAT 1 cut(s) 503
BspLI GGNNCC 1 cut(s) 1596
BspMAI CTGCAG 1 cut(s) 909
BspPI GGATC 2 cut(s) 296, 966
BspTI CTTAAG 1 cut(s) 1520
BsrDI GCAATG 1 cut(s) 679
BsrI ACTGG 3 cut(s) 378, 740, 1315
BssECI CCNNGG 2 cut(s) 261, 1353
BssMI GATC 8 cut(s) 301, 319, 334, 339, 451, 709, 722, 971
BssT1I CCWWGG 1 cut(s) 1353
Bst2UI CCWGG 1 cut(s) 195
Bst4CI ACNGT 4 cut(s) 662, 760, 1114, 1199
Bst6I CTCTTC 2 cut(s) 713, 1221
BstAFI CTTAAG 1 cut(s) 1520
BstAPI GCANNNNNTGC 1 cut(s) 962
BstDEI CTNAG 8 cut(s) 207, 726, 807, 976, 1073, 1379, 1508, 1599
BstF5I GGATG 3 cut(s) 435, 469, 478
BstKTI GATC 8 cut(s) 304, 322, 337, 342, 454, 712, 725, 974
BstMBI GATC 8 cut(s) 301, 319, 334, 339, 451, 709, 722, 971
BstMWI GCNNNNNNNGC 3 cut(s) 257, 962, 1358
BstNI CCWGG 1 cut(s) 195
BstNSI RCATGY 1 cut(s) 1069
BstSCI CCNGG 1 cut(s) 193
BstSFI CTRYAG 2 cut(s) 905, 1104
BstV1I GCAGC 3 cut(s) 235, 1261, 1345
BstV2I GAAGAC 1 cut(s) 560
BstX2I RGATCY 4 cut(s) 339, 451, 722, 971
BstYI RGATCY 4 cut(s) 339, 451, 722, 971
Bsu15I ATCGAT 1 cut(s) 503
BsuRI GGCC 3 cut(s) 770, 989, 1377
BsuTUI ATCGAT 1 cut(s) 503
BtsCI GGATG 3 cut(s) 435, 469, 478
BtsI GCAGTG 1 cut(s) 612
BtsIMutI CAGTG 6 cut(s) 612, 667, 747, 765, 1204, 1308
CaiI CAGNNNCTG 1 cut(s) 1112
Cfr13I GGNCC 1 cut(s) 1595
ClaI ATCGAT 1 cut(s) 503
Csp6I GTAC 5 cut(s) 60, 163, 351, 438, 1578
CviAII CATG 2 cut(s) 443, 1066
CviQI GTAC 5 cut(s) 60, 163, 351, 438, 1578
DdeI CTNAG 8 cut(s) 207, 726, 807, 976, 1073, 1379, 1508, 1599
DpnI GATC 8 cut(s) 303, 321, 336, 341, 453, 711, 724, 973
DpnII GATC 8 cut(s) 301, 319, 334, 339, 451, 709, 722, 971
Eam1104I CTCTTC 2 cut(s) 713, 1221
EarI CTCTTC 2 cut(s) 713, 1221
Eco130I CCWWGG 1 cut(s) 1353
Eco24I GRGCYC 1 cut(s) 414
Eco47I GGWCC 1 cut(s) 1595
Eco57I CTGAAG 2 cut(s) 698, 1221
EcoO109I RGGNCCY 1 cut(s) 1595
EcoRI GAATTC 1 cut(s) 844
EcoRII CCWGG 1 cut(s) 193
EcoT14I CCWWGG 1 cut(s) 1353
EcoT38I GRGCYC 1 cut(s) 414
ErhI CCWWGG 1 cut(s) 1353
FaeI CATG 2 cut(s) 446, 1069
FaiI YATR 7 cut(s) 360, 419, 444, 485, 1067, 1142, 1292
FalI AAGNNNNNCTT 1 cut(s) 1596
FaqI GGGAC 1 cut(s) 1572
FatI CATG 2 cut(s) 442, 1065
FbaI TGATCA 1 cut(s) 319
Fnu4HI GCNGC 3 cut(s) 249, 1250, 1359
FokI GGATG 3 cut(s) 442, 476, 485
FriOI GRGCYC 1 cut(s) 414
Fsp4HI GCNGC 3 cut(s) 249, 1250, 1359
FspBI CTAG 8 cut(s) 387, 822, 855, 888, 921, 1008, 1125, 1583
GluI GCNGC 3 cut(s) 249, 1250, 1359
GsuI CTGGAG 3 cut(s) 663, 723, 1332
HaeIII GGCC 3 cut(s) 770, 989, 1377
Hin1II CATG 2 cut(s) 446, 1069
HincII GTYRAC 2 cut(s) 1204, 1416
HindII GTYRAC 2 cut(s) 1204, 1416
HinfI GANTC 8 cut(s) 8, 65, 119, 556, 811, 1097, 1516, 1547
HpaI GTTAAC 1 cut(s) 1416
HphI GGTGA 3 cut(s) 17, 780, 1166
Hpy166II GTNNAC 2 cut(s) 1204, 1416
Hpy188III TCNNGA 8 cut(s) 83, 272, 407, 626, 680, 1183, 1337, 1583
Hpy8I GTNNAC 2 cut(s) 1204, 1416
HpyAV CCTTC 5 cut(s) 87, 724, 979, 1245, 1402
HpyCH4III ACNGT 4 cut(s) 662, 760, 1114, 1199
HpyCH4V TGCA 5 cut(s) 292, 907, 965, 1063, 1249
HpyF10VI GCNNNNNNNGC 3 cut(s) 257, 962, 1358
HpyF3I CTNAG 8 cut(s) 207, 726, 807, 976, 1073, 1379, 1508, 1599
Hsp92II CATG 2 cut(s) 446, 1069
Ksp22I TGATCA 1 cut(s) 319
KspAI GTTAAC 1 cut(s) 1416
Kzo9I GATC 8 cut(s) 301, 319, 334, 339, 451, 709, 722, 971
LmnI GCTCC 8 cut(s) 265, 682, 953, 1011, 1144, 1257, 1366, 1483
Lsp1109I GCAGC 3 cut(s) 235, 1261, 1345
LweI GCATC 1 cut(s) 22
MaeI CTAG 8 cut(s) 387, 822, 855, 888, 921, 1008, 1125, 1583
MaeIII GTNAC 6 cut(s) 733, 834, 979, 1068, 1117, 1317
MalI GATC 8 cut(s) 303, 321, 336, 341, 453, 711, 724, 973
MboI GATC 8 cut(s) 301, 319, 334, 339, 451, 709, 722, 971
MboII GAAGA 9 cut(s) 182, 461, 565, 590, 704, 730, 787, 1238, 1400
MfeI CAATTG 1 cut(s) 1208
MflI RGATCY 4 cut(s) 339, 451, 722, 971
MhlI GDGCHC 4 cut(s) 394, 414, 1016, 1462
MluCI AATT 4 cut(s) 363, 783, 844, 1208
MlyI GAGTC 2 cut(s) 550, 1510
MmeI TCCRAC 1 cut(s) 839
MroXI GAANNNNTTC 1 cut(s) 1611
MseI TTAA 5 cut(s) 308, 687, 1004, 1415, 1521
MslI CAYNNNNRTG 1 cut(s) 1289
MspCI CTTAAG 1 cut(s) 1520
MspR9I CCNGG 1 cut(s) 195
MunI CAATTG 1 cut(s) 1208
Mva1269I GAATGC 1 cut(s) 1178
MvaI CCWGG 1 cut(s) 195
MwoI GCNNNNNNNGC 3 cut(s) 257, 962, 1358
NdeII GATC 8 cut(s) 301, 319, 334, 339, 451, 709, 722, 971
NlaIII CATG 2 cut(s) 446, 1069
NlaIV GGNNCC 1 cut(s) 1596
NmeAIII GCCGAG 1 cut(s) 286
NmuCI GTSAC 2 cut(s) 1068, 1317
NspI RCATGY 1 cut(s) 1069
PciI ACATGT 1 cut(s) 1065
PctI GAATGC 1 cut(s) 1178
PdmI GAANNNNTTC 1 cut(s) 1611
PfeI GAWTC 6 cut(s) 8, 65, 119, 811, 1097, 1547
PflFI GACNNNGTC 1 cut(s) 1166
PkrI GCNGC 3 cut(s) 250, 1251, 1360
PleI GAGTC 2 cut(s) 550, 1510
PpsI GAGTC 2 cut(s) 550, 1510
PpuMI RGGWCCY 1 cut(s) 1595
PscI ACATGT 1 cut(s) 1065
Psp5II RGGWCCY 1 cut(s) 1595
Psp6I CCWGG 1 cut(s) 193
PspGI CCWGG 1 cut(s) 193
PspN4I GGNNCC 1 cut(s) 1596
PspPI GGNCC 1 cut(s) 1595
PspPPI RGGWCCY 1 cut(s) 1595
PstI CTGCAG 1 cut(s) 909
PstNI CAGNNNCTG 1 cut(s) 1112
PsuI RGATCY 4 cut(s) 339, 451, 722, 971
PsyI GACNNNGTC 1 cut(s) 1166
RsaI GTAC 5 cut(s) 61, 164, 352, 439, 1579
RsaNI GTAC 5 cut(s) 60, 163, 351, 438, 1578
RseI CAYNNNNRTG 1 cut(s) 1289
SaqAI TTAA 5 cut(s) 308, 687, 1004, 1415, 1521
SatI GCNGC 3 cut(s) 249, 1250, 1359
Sau3AI GATC 8 cut(s) 301, 319, 334, 339, 451, 709, 722, 971
Sau96I GGNCC 1 cut(s) 1595
ScaI AGTACT 3 cut(s) 164, 439, 1579
SchI GAGTC 2 cut(s) 550, 1510
ScrFI CCNGG 1 cut(s) 195
SduI GDGCHC 4 cut(s) 394, 414, 1016, 1462
SfaNI GCATC 1 cut(s) 22
SfcI CTRYAG 2 cut(s) 905, 1104
SinI GGWCC 1 cut(s) 1595
SmiMI CAYNNNNRTG 1 cut(s) 1289
SmlI CTYRAG 4 cut(s) 393, 455, 624, 1520
SmoI CTYRAG 4 cut(s) 393, 455, 624, 1520
SpeI ACTAGT 1 cut(s) 386
Sse9I AATT 4 cut(s) 363, 783, 844, 1208
SsiI CCGC 2 cut(s) 537, 872
SspMI CTAG 8 cut(s) 387, 822, 855, 888, 921, 1008, 1125, 1583
StyD4I CCNGG 1 cut(s) 193
StyI CCWWGG 1 cut(s) 1353
TaaI ACNGT 4 cut(s) 662, 760, 1114, 1199
TaqI TCGA 5 cut(s) 253, 503, 708, 1265, 1571
TasI AATT 4 cut(s) 363, 783, 844, 1208
TatI WGTACW 3 cut(s) 162, 437, 1577
TfiI GAWTC 6 cut(s) 8, 65, 119, 811, 1097, 1547
Tru1I TTAA 5 cut(s) 308, 687, 1004, 1415, 1521
Tru9I TTAA 5 cut(s) 308, 687, 1004, 1415, 1521
TscAI CASTG 6 cut(s) 619, 667, 747, 765, 1204, 1315
TseFI GTSAC 2 cut(s) 1068, 1317
TseI GCWGC 3 cut(s) 248, 1249, 1358
Tsp45I GTSAC 2 cut(s) 1068, 1317
TspDTI ATGAA 5 cut(s) 57, 87, 111, 987, 1239
TspGWI ACGGA 2 cut(s) 368, 1420
TspRI CASTG 6 cut(s) 619, 667, 747, 765, 1204, 1315
Tth111I GACNNNGTC 1 cut(s) 1166
Vha464I CTTAAG 1 cut(s) 1520
VpaK11BI GGWCC 1 cut(s) 1595
XapI RAATTY 1 cut(s) 844
XbaI TCTAGA 1 cut(s) 1582
XceI RCATGY 1 cut(s) 1069
XmnI GAANNNNTTC 1 cut(s) 1611
XspI CTAG 8 cut(s) 387, 822, 855, 888, 921, 1008, 1125, 1583
ZrmI AGTACT 3 cut(s) 164, 439, 1579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.