Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001595

Physical Location & Seq

Genomic Coordinates Reverse (-)

88542274 .. 88542939

Gene Structure 666 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00067160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGAAGAAGGAATAGAAAAAACCAAGCGGGAAGCAGAGGAGATGAAAAAGAGAGCGAAGGATTACGCCTACGAAGCTAAGGAGAAGACAAAGAGTGCGGCGGAAACCATGGAGGAGAAGACCAAAGAGGGAACGTATAAGGCTTCAGAGACAGCGGAGAGTGCCAAGGAGAAGGCCAAGGACTACGCTTATGATGCTAAGGAGAAGACGAAAGACATGGCTGGAACTGTGGCGGAGAAGGCTAAGGAGGGGACTCACAAAGTGGCGAAGACTGCGGGGAGTGCTAAGGAGAAGGCCAAGGACACGGTTTATGAGGCGACTGAGAAGGCGGAGGGTGTGGCGGAGACGGCGGAGGATAAGGTGAAGGGAGGGACACATAAGGCTGCGGAGACCGTGAAGGATACAGTGAAGGGCGCTTGGGAGGCGACTAAGGAGACGGGGCAGGCAATCAAGGAGGCAGTTGTGGGGCCCGATGAGGAGGTGGCAGTGGTCGTGGAGGACACGTCAGATGATGATGTGGCGGTGACCGGAGGGAAGGTGATGGATGCGGGTGTCATTGAGCGGAGGCGTGCTGCTGGGTATAGGTCCGATGAGGACCTGTCGGCGGAGGCGGAGCTTAGGAGGCGGACCGCCTATAAGAAGGCCGGTGACAAGAAAGATACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

221

Amino Acids

23.99

Weight (kDa)

5.38

Isoelectric Point (pI)

35.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21020 AT5G44310 AT5G44310
fragaria_vesca	FvH4_3g08920 FvH4_3g08940 FvH4_3g08950
malus_domestica	MD00G1115300.v1.1 MD00G1115400.v1.1 MD00G1115500.v1.1
prunus_persica	Prupe.4G049600_v2.0.a1 Prupe.4G049700_v2.0.a1 Prupe.4G050100_v2.0.a1
pyrus_communis	pycom05g28860 pycom05g28880
rosa_chinensis	RchiOBHm_Chr5g0008801 RchiOBHm_Chr5g0008811 RchiOBHm_Chr5g0008841
rosa_laevigata	RLG00000031604 RLG00000031608
rosa_multiflora	Rmu_co8423631.1_g000001 Rmu_co8451173.1_g000001 Rmu_sc0000650.1_g000027 Rmu_sc0001473.1_g000029 Rmu_sc0001473.1_g000030 Rmu_sc0014084.1_g000001 Rmu_sc0020593.1_g000002
rosa_roxburghii	Rroxscaffold_1G00067160 Rroxscaffold_1G00067170 Rroxscaffold_1G00067190 Rroxscaffold_1G00067210 Rroxscaffold_1G00067790 Rroxscaffold_1G00067810
rosa_rugosa	Rorug04G0439000 Rorug04G0439500 Rorug04G0439700
rosa_samantha	Rh5AG067500 Rh5AG067600 Rh5AG067800 Rh5BG064400 Rh5BG064500 Rh5BG064800 Rh5CG075300 Rh5CG075500 Rh5CG075800 Rh5DG061000 Rh5DG061300 Rh5DG061400
rosa_wichuraiana	Rw5G006340 Rw5G006350 Rw5G006370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	562
AcuI	CTGAAG	1 cut(s)	129
AdeI	CACNNNGTG	1 cut(s)	262
AfiI	CCNNNNNNNGG	1 cut(s)	604
AflIII	ACRYGT	1 cut(s)	501
AjiI	CACGTC	1 cut(s)	504
AluBI	AGCT	2 cut(s)	77, 616
AluI	AGCT	2 cut(s)	77, 616
Alw26I	GTCTC	4 cut(s)	143, 338, 383, 428
AoxI	GGCC	4 cut(s)	174, 294, 467, 642
ApaI	GGGCCC	1 cut(s)	471
ApeKI	GCWGC	2 cut(s)	383, 572
AspLEI	GCGC	1 cut(s)	416
AspS9I	GGNCC	5 cut(s)	467, 468, 585, 595, 627
AsuHPI	GGTGA	4 cut(s)	373, 535, 550, 659
AvaII	GGWCC	3 cut(s)	585, 595, 627
BaeGI	GKGCMC	1 cut(s)	471
BanII	GRGCYC	1 cut(s)	471
BbsI	GAAGAC	4 cut(s)	92, 125, 212, 275
BbvI	GCAGC	2 cut(s)	370, 559
BccI	CCATC	1 cut(s)	535
BceAI	ACGGC	1 cut(s)	363
BciVI	GTATCC	1 cut(s)	394
BcoDI	GTCTC	4 cut(s)	143, 338, 383, 428
BfoI	RGCGCY	1 cut(s)	417
BfuI	GTATCC	1 cut(s)	394
BisI	GCNGC	3 cut(s)	99, 384, 573
BlsI	GCNGC	3 cut(s)	100, 385, 574
Bme18I	GGWCC	3 cut(s)	585, 595, 627
BmgBI	CACGTC	1 cut(s)	504
BmgT120I	GGNCC	5 cut(s)	467, 468, 585, 595, 627
BmiI	GGNNCC	2 cut(s)	468, 469
BmsI	GCATC	2 cut(s)	184, 535
BpiI	GAAGAC	4 cut(s)	92, 125, 212, 275
Bpu10I	CCTNAGC	5 cut(s)	78, 198, 243, 285, 617
BsaI	GGTCTC	1 cut(s)	383
BsaJI	CCNNGG	4 cut(s)	108, 165, 177, 297
BsaWI	WCCGGW	1 cut(s)	527
BsaXI	ACNNNNNCTCC	4 cut(s)	488, 518, 522, 552
Bsc4I	CCNNNNNNNGG	1 cut(s)	604
Bse118I	RCCGGY	1 cut(s)	644
BseDI	CCNNGG	4 cut(s)	108, 165, 177, 297
BseGI	GGATG	1 cut(s)	550
BseLI	CCNNNNNNNGG	1 cut(s)	604
BseMII	CTCAG	1 cut(s)	312
BseRI	GAGGAG	3 cut(s)	53, 128, 491
BseSI	GKGCMC	1 cut(s)	471
BseXI	GCAGC	2 cut(s)	370, 559
BseYI	CCCAGC	1 cut(s)	575
BshFI	GGCC	4 cut(s)	176, 296, 469, 644
BsiSI	CCGG	2 cut(s)	528, 645
BslFI	GGGAC	2 cut(s)	265, 385
BslI	CCNNNNNNNGG	1 cut(s)	604
BsmAI	GTCTC	4 cut(s)	143, 338, 383, 428
BsmBI	CGTCTC	2 cut(s)	338, 428
BsmFI	GGGAC	2 cut(s)	265, 385
BsnI	GGCC	4 cut(s)	176, 296, 469, 644
Bso31I	GGTCTC	1 cut(s)	383
Bsp120I	GGGCCC	1 cut(s)	467
Bsp1286I	GDGCHC	1 cut(s)	471
Bsp19I	CCATGG	1 cut(s)	108
BspANI	GGCC	4 cut(s)	176, 296, 469, 644
BspCNI	CTCAG	1 cut(s)	313
BspLI	GGNNCC	2 cut(s)	468, 469
BspTNI	GGTCTC	1 cut(s)	383
BsrBI	CCGCTC	1 cut(s)	562
BsrFI	RCCGGY	1 cut(s)	644
BssAI	RCCGGY	1 cut(s)	644
BssECI	CCNNGG	4 cut(s)	108, 165, 177, 297
BssT1I	CCWWGG	4 cut(s)	108, 165, 177, 297
Bst4CI	ACNGT	4 cut(s)	229, 307, 394, 406
BstC8I	GCNNGC	2 cut(s)	444, 570
BstDEI	CTNAG	7 cut(s)	78, 198, 243, 285, 321, 429, 617
BstDSI	CCRYGG	1 cut(s)	108
BstEII	GGTNACC	1 cut(s)	523
BstF5I	GGATG	1 cut(s)	550
BstH2I	RGCGCY	1 cut(s)	417
BstHHI	GCGC	1 cut(s)	416
BstMAI	GTCTC	4 cut(s)	143, 338, 383, 428
BstMWI	GCNNNNNNNGC	9 cut(s)	74, 161, 194, 239, 272, 281, 347, 422, 622
BstPI	GGTNACC	1 cut(s)	523
BstSLI	GKGCMC	1 cut(s)	471
BstV1I	GCAGC	2 cut(s)	370, 559
BstV2I	GAAGAC	4 cut(s)	92, 125, 212, 275
BsuI	GTATCC	1 cut(s)	394
BsuRI	GGCC	4 cut(s)	176, 296, 469, 644
BtgI	CCRYGG	1 cut(s)	108
BtrI	CACGTC	1 cut(s)	504
BtsCI	GGATG	1 cut(s)	550
BtsI	GCAGTG	1 cut(s)	492
BtsIMutI	CAGTG	2 cut(s)	411, 492
Cac8I	GCNNGC	2 cut(s)	444, 570
CfoI	GCGC	1 cut(s)	416
Cfr10I	RCCGGY	1 cut(s)	644
Cfr13I	GGNCC	5 cut(s)	467, 468, 585, 595, 627
CpoI	CGGWCCG	1 cut(s)	627
CspI	CGGWCCG	1 cut(s)	627
CviAII	CATG	2 cut(s)	109, 217
DdeI	CTNAG	7 cut(s)	78, 198, 243, 285, 321, 429, 617
DraIII	CACNNNGTG	1 cut(s)	262
EciI	GGCGGA	8 cut(s)	116, 248, 344, 356, 365, 620, 626, 640
Eco130I	CCWWGG	4 cut(s)	108, 165, 177, 297
Eco24I	GRGCYC	1 cut(s)	471
Eco31I	GGTCTC	1 cut(s)	383
Eco47I	GGWCC	3 cut(s)	585, 595, 627
Eco57I	CTGAAG	1 cut(s)	129
Eco91I	GGTNACC	1 cut(s)	523
EcoO109I	RGGNCCY	2 cut(s)	467, 595
EcoO65I	GGTNACC	1 cut(s)	523
EcoT14I	CCWWGG	4 cut(s)	108, 165, 177, 297
EcoT38I	GRGCYC	1 cut(s)	471
ErhI	CCWWGG	4 cut(s)	108, 165, 177, 297
Esp3I	CGTCTC	2 cut(s)	338, 428
FaeI	CATG	2 cut(s)	112, 220
FaiI	YATR	8 cut(s)	110, 138, 192, 218, 312, 378, 582, 636
FaqI	GGGAC	2 cut(s)	265, 385
FatI	CATG	2 cut(s)	108, 216
FauI	CCCGC	3 cut(s)	21, 268, 541
Fnu4HI	GCNGC	3 cut(s)	99, 384, 573
FokI	GGATG	1 cut(s)	557
FriOI	GRGCYC	1 cut(s)	471
Fsp4HI	GCNGC	3 cut(s)	99, 384, 573
GlaI	GCGC	1 cut(s)	415
GluI	GCNGC	3 cut(s)	99, 384, 573
GsaI	CCCAGC	1 cut(s)	579
HaeII	RGCGCY	1 cut(s)	417
HaeIII	GGCC	4 cut(s)	176, 296, 469, 644
HapII	CCGG	2 cut(s)	528, 645
HhaI	GCGC	1 cut(s)	416
Hin1II	CATG	2 cut(s)	112, 220
Hin6I	GCGC	1 cut(s)	414
HinP1I	GCGC	1 cut(s)	414
HinfI	GANTC	1 cut(s)	253
HpaII	CCGG	2 cut(s)	528, 645
HphI	GGTGA	4 cut(s)	373, 535, 550, 659
Hpy188I	TCNGA	3 cut(s)	148, 508, 589
HpyCH4III	ACNGT	4 cut(s)	229, 307, 394, 406
HpyCH4IV	ACGT	2 cut(s)	134, 503
HpyF10VI	GCNNNNNNNGC	9 cut(s)	74, 161, 194, 239, 272, 281, 347, 422, 622
HpyF3I	CTNAG	7 cut(s)	78, 198, 243, 285, 321, 429, 617
HpySE526I	ACGT	2 cut(s)	134, 503
Hsp92II	CATG	2 cut(s)	112, 220
HspAI	GCGC	1 cut(s)	414
LmnI	GCTCC	1 cut(s)	613
LpnPI	CCDG	6 cut(s)	207, 428, 541, 561, 611, 658
Lsp1109I	GCAGC	2 cut(s)	370, 559
LweI	GCATC	2 cut(s)	184, 535
MaeII	ACGT	2 cut(s)	134, 503
MaeIII	GTNAC	2 cut(s)	523, 647
MbiI	CCGCTC	1 cut(s)	562
MboII	GAAGA	5 cut(s)	17, 97, 130, 217, 280
MhlI	GDGCHC	1 cut(s)	471
MlyI	GAGTC	1 cut(s)	247
MspA1I	CMGCKG	1 cut(s)	155
MspI	CCGG	2 cut(s)	528, 645
MwoI	GCNNNNNNNGC	9 cut(s)	74, 161, 194, 239, 272, 281, 347, 422, 622
NcoI	CCATGG	1 cut(s)	108
NlaIII	CATG	2 cut(s)	112, 220
NlaIV	GGNNCC	2 cut(s)	468, 469
NmuCI	GTSAC	2 cut(s)	523, 647
PkrI	GCNGC	3 cut(s)	100, 385, 574
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
PpuMI	RGGWCCY	1 cut(s)	595
Psp5II	RGGWCCY	1 cut(s)	595
PspEI	GGTNACC	1 cut(s)	523
PspFI	CCCAGC	1 cut(s)	575
PspN4I	GGNNCC	2 cut(s)	468, 469
PspOMI	GGGCCC	1 cut(s)	467
PspPI	GGNCC	5 cut(s)	467, 468, 585, 595, 627
PspPPI	RGGWCCY	1 cut(s)	595
Rsr2I	CGGWCCG	1 cut(s)	627
RsrII	CGGWCCG	1 cut(s)	627
SatI	GCNGC	3 cut(s)	99, 384, 573
Sau96I	GGNCC	5 cut(s)	467, 468, 585, 595, 627
SchI	GAGTC	1 cut(s)	247
SduI	GDGCHC	1 cut(s)	471
SfaNI	GCATC	2 cut(s)	184, 535
SinI	GGWCC	3 cut(s)	585, 595, 627
StyI	CCWWGG	4 cut(s)	108, 165, 177, 297
TaaI	ACNGT	4 cut(s)	229, 307, 394, 406
TaiI	ACGT	2 cut(s)	137, 506
TauI	GCSGC	1 cut(s)	101
TscAI	CASTG	2 cut(s)	411, 492
TseFI	GTSAC	2 cut(s)	523, 647
TseI	GCWGC	2 cut(s)	383, 572
Tsp45I	GTSAC	2 cut(s)	523, 647
TspDTI	ATGAA	1 cut(s)	59
TspRI	CASTG	2 cut(s)	411, 492
VpaK11BI	GGWCC	3 cut(s)	585, 595, 627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.