Rh5BG064500

response to water deprivation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0001595
Physical Location & Seq
Forward (+)
5351649 .. 5352713
1065 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG064500.1

Sequence Viewer

Length: 609 bp
ATGGCAGCCAGCAATGTCATCTTCAACCTCTCAAGGTCCTCGTTTCCTCAATCCCCGGCTTCACAGTCCCTCAGTCGCTCTCTCAAAACCTCCAGGGTCTGCTTCACCTCCTTCTCCAACTTCTCCAAGGTTGGAAATGCGGCGGAGAAGAGTAGGAAATCAAGTTCTCGCTGGGCGTATGACCACAAGGACTGGAGTACTAAAGCAAAGCAAACCCTGGAAGACGATGTCGAGAGTGGAAAGCAACGCTTCGAGGAACTGAAGGGAGCAGCAACCGATTACGCCAAAGACACGGTGGAGAACGTCAAAGGTGCGGCGGCGACTATAGGAGAGAAAGCCAAGGAGGGGTCGGACAAGGTGGCGGAGTCCGCGGAGAGTACCAAGGAGAAGGTAAAGGAGTATGCAGATGGTGCAACAGAGAAGACAAAAGACGCGGCGGAGACTATAGCGGCGAAGGCCAAGGAGGACAGTAACAAGGTGGTGGACACCACAGTGAGTACCAAGGACACGGCTTACGATGCGGCGGAGAGTGAGGCGGAGACGGTGAAAGATAAGGTGAACGAGGGGACGAGCAAGACGGCGGAGGCGGTGAAGAATTTGAAGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 ko00515 ko01100 ko04624 ko05205 map00514 map00515 map01100 map04624 map05205
Pfam Domains
Protein Families
Ank_2 Ank_4 Ank_5 Apolipoprotein Death ZU5

Protein Analysis

202

Amino Acids

21.76

Weight (kDa)

6.66

Isoelectric Point (pI)

41.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 371, 434
AcsI RAATTY 1 cut(s) 595
AcuI CTGAAG 1 cut(s) 281
AfaI GTAC 3 cut(s) 199, 379, 499
AfiI CCNNNNNNNGG 1 cut(s) 345
AgsI TTSAA 2 cut(s) 25, 601
AjnI CCWGG 2 cut(s) 92, 216
AleI CACNNNNGTG 1 cut(s) 491
AloI GAACNNNNNNTCC 2 cut(s) 148, 180
Alw26I GTCTC 2 cut(s) 434, 533
AlwNI CAGNNNCTG 1 cut(s) 99
AoxI GGCC 1 cut(s) 456
ApeKI GCWGC 2 cut(s) 5, 269
ApoI RAATTY 1 cut(s) 595
AspS9I GGNCC 1 cut(s) 36
AsuC2I CCSGG 1 cut(s) 56
AsuHPI GGTGA 4 cut(s) 97, 556, 568, 601
AvaII GGWCC 1 cut(s) 36
BbsI GAAGAC 2 cut(s) 228, 428
BbvI GCAGC 2 cut(s) 17, 281
BccI CCATC 1 cut(s) 401
BceAI ACGGC 2 cut(s) 525, 594
BciT130I CCWGG 2 cut(s) 94, 218
BcnI CCSGG 1 cut(s) 56
BcoDI GTCTC 2 cut(s) 434, 533
BfmI CTRYAG 2 cut(s) 324, 444
BisI GCNGC 8 cut(s) 6, 141, 270, 315, 318, 435, 450, 522
BlsI GCNGC 8 cut(s) 7, 142, 271, 316, 319, 436, 451, 523
BmcAI AGTACT 1 cut(s) 199
Bme1390I CCNGG 3 cut(s) 56, 94, 218
Bme18I GGWCC 1 cut(s) 36
BmgT120I GGNCC 1 cut(s) 36
BmrFI CCNGG 3 cut(s) 56, 94, 218
BmsI GCATC 1 cut(s) 508
BpiI GAAGAC 2 cut(s) 228, 428
BpmI CTGGAG 2 cut(s) 76, 214
BpuEI CTTGAG 1 cut(s) 16
BpuMI CCSGG 1 cut(s) 56
BsaJI CCNNGG 9 cut(s) 54, 93, 126, 216, 339, 369, 381, 459, 501
Bsc4I CCNNNNNNNGG 1 cut(s) 345
Bse1I ACTGG 1 cut(s) 197
Bse3DI GCAATG 1 cut(s) 19
BseBI CCWGG 2 cut(s) 94, 218
BseDI CCNNGG 9 cut(s) 54, 93, 126, 216, 339, 369, 381, 459, 501
BseLI CCNNNNNNNGG 1 cut(s) 345
BseMI GCAATG 1 cut(s) 19
BseMII CTCAG 1 cut(s) 85
BseNI ACTGG 1 cut(s) 197
BseXI GCAGC 2 cut(s) 17, 281
BseYI CCCAGC 1 cut(s) 171
Bsh1236I CGCG 2 cut(s) 371, 434
BshFI GGCC 1 cut(s) 458
BsiSI CCGG 1 cut(s) 56
BslFI GGGAC 2 cut(s) 52, 580
BslI CCNNNNNNNGG 1 cut(s) 345
BsmAI GTCTC 2 cut(s) 434, 533
BsmBI CGTCTC 1 cut(s) 533
BsmFI GGGAC 2 cut(s) 52, 580
BsnI GGCC 1 cut(s) 458
BspANI GGCC 1 cut(s) 458
BspCNI CTCAG 1 cut(s) 84
BspFNI CGCG 2 cut(s) 371, 434
BsrDI GCAATG 1 cut(s) 19
BsrI ACTGG 1 cut(s) 197
BssECI CCNNGG 9 cut(s) 54, 93, 126, 216, 339, 369, 381, 459, 501
BssT1I CCWWGG 5 cut(s) 126, 339, 381, 459, 501
Bst2UI CCWGG 2 cut(s) 94, 218
Bst4CI ACNGT 5 cut(s) 66, 295, 470, 493, 544
Bst6I CTCTTC 1 cut(s) 143
BstAPI GCANNNNNTGC 1 cut(s) 410
BstC8I GCNNGC 1 cut(s) 10
BstDEI CTNAG 1 cut(s) 71
BstDSI CCRYGG 1 cut(s) 369
BstFNI CGCG 2 cut(s) 371, 434
BstMAI GTCTC 2 cut(s) 434, 533
BstMWI GCNNNNNNNGC 4 cut(s) 368, 410, 455, 518
BstNI CCWGG 2 cut(s) 94, 218
BstSCI CCNGG 3 cut(s) 54, 92, 216
BstSFI CTRYAG 2 cut(s) 324, 444
BstUI CGCG 2 cut(s) 371, 434
BstV1I GCAGC 2 cut(s) 17, 281
BstV2I GAAGAC 2 cut(s) 228, 428
BsuRI GGCC 1 cut(s) 458
BtgI CCRYGG 1 cut(s) 369
BtsIMutI CAGTG 1 cut(s) 498
Cac8I GCNNGC 1 cut(s) 10
CaiI CAGNNNCTG 1 cut(s) 99
Cfr13I GGNCC 1 cut(s) 36
Cfr42I CCGCGG 1 cut(s) 372
CseI GACGC 1 cut(s) 440
Csp6I GTAC 3 cut(s) 198, 378, 498
CviJI RGCY 5 cut(s) 8, 59, 338, 458, 512
CviKI_1 RGCY 5 cut(s) 8, 59, 338, 458, 512
CviQI GTAC 3 cut(s) 198, 378, 498
DdeI CTNAG 1 cut(s) 71
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
EciI GGCGGA 6 cut(s) 158, 377, 452, 539, 551, 596
Eco130I CCWWGG 5 cut(s) 126, 339, 381, 459, 501
Eco47I GGWCC 1 cut(s) 36
Eco57I CTGAAG 1 cut(s) 281
EcoO109I RGGNCCY 1 cut(s) 36
EcoRII CCWGG 2 cut(s) 92, 216
EcoT14I CCWWGG 5 cut(s) 126, 339, 381, 459, 501
ErhI CCWWGG 5 cut(s) 126, 339, 381, 459, 501
Esp3I CGTCTC 1 cut(s) 533
FaiI YATR 4 cut(s) 180, 326, 402, 446
FalI AAGNNNNNCTT 2 cut(s) 233, 265
FaqI GGGAC 2 cut(s) 52, 580
Fnu4HI GCNGC 8 cut(s) 6, 141, 270, 315, 318, 435, 450, 522
Fsp4HI GCNGC 8 cut(s) 6, 141, 270, 315, 318, 435, 450, 522
GluI GCNGC 8 cut(s) 6, 141, 270, 315, 318, 435, 450, 522
GsaI CCCAGC 1 cut(s) 175
GsuI CTGGAG 2 cut(s) 76, 214
HaeIII GGCC 1 cut(s) 458
HapII CCGG 1 cut(s) 56
HgaI GACGC 1 cut(s) 440
HinfI GANTC 1 cut(s) 365
HpaII CCGG 1 cut(s) 56
HphI GGTGA 4 cut(s) 97, 556, 568, 601
Hpy166II GTNNAC 2 cut(s) 484, 559
Hpy188I TCNGA 1 cut(s) 352
Hpy188III TCNNGA 1 cut(s) 232
Hpy8I GTNNAC 2 cut(s) 484, 559
HpyAV CCTTC 4 cut(s) 121, 256, 382, 448
HpyCH4III ACNGT 5 cut(s) 66, 295, 470, 493, 544
HpyCH4IV ACGT 1 cut(s) 303
HpyCH4V TGCA 2 cut(s) 404, 413
HpyF10VI GCNNNNNNNGC 4 cut(s) 368, 410, 455, 518
HpyF3I CTNAG 1 cut(s) 71
HpySE526I ACGT 1 cut(s) 303
KspI CCGCGG 1 cut(s) 372
LmnI GCTCC 1 cut(s) 266
LpnPI CCDG 8 cut(s) 22, 69, 79, 106, 157, 178, 203, 230
Lsp1109I GCAGC 2 cut(s) 17, 281
LweI GCATC 1 cut(s) 508
MaeII ACGT 1 cut(s) 303
MaeIII GTNAC 1 cut(s) 470
MboII GAAGA 5 cut(s) 13, 160, 233, 433, 604
MluCI AATT 1 cut(s) 595
MlyI GAGTC 1 cut(s) 374
MmeI TCCRAC 3 cut(s) 112, 141, 330
MslI CAYNNNNRTG 1 cut(s) 491
MspA1I CMGCKG 1 cut(s) 371
MspI CCGG 1 cut(s) 56
MspR9I CCNGG 3 cut(s) 56, 94, 218
MvaI CCWGG 2 cut(s) 94, 218
MvnI CGCG 2 cut(s) 371, 434
MwoI GCNNNNNNNGC 4 cut(s) 368, 410, 455, 518
NciI CCSGG 1 cut(s) 56
OliI CACNNNNGTG 1 cut(s) 491
PflFI GACNNNGTC 1 cut(s) 227
PkrI GCNGC 8 cut(s) 7, 142, 271, 316, 319, 436, 451, 523
PleI GAGTC 1 cut(s) 373
PpsI GAGTC 1 cut(s) 373
PpuMI RGGWCCY 1 cut(s) 36
Psp5II RGGWCCY 1 cut(s) 36
Psp6I CCWGG 2 cut(s) 92, 216
PspFI CCCAGC 1 cut(s) 171
PspGI CCWGG 2 cut(s) 92, 216
PspPI GGNCC 1 cut(s) 36
PspPPI RGGWCCY 1 cut(s) 36
PstNI CAGNNNCTG 1 cut(s) 99
PsyI GACNNNGTC 1 cut(s) 227
RsaI GTAC 3 cut(s) 199, 379, 499
RsaNI GTAC 3 cut(s) 198, 378, 498
RseI CAYNNNNRTG 1 cut(s) 491
SacII CCGCGG 1 cut(s) 372
SatI GCNGC 8 cut(s) 6, 141, 270, 315, 318, 435, 450, 522
Sau96I GGNCC 1 cut(s) 36
ScaI AGTACT 1 cut(s) 199
SchI GAGTC 1 cut(s) 374
ScrFI CCNGG 3 cut(s) 56, 94, 218
SfaNI GCATC 1 cut(s) 508
SfcI CTRYAG 2 cut(s) 324, 444
Sfr303I CCGCGG 1 cut(s) 372
SgrBI CCGCGG 1 cut(s) 372
SinI GGWCC 1 cut(s) 36
SmiMI CAYNNNNRTG 1 cut(s) 491
SmlI CTYRAG 1 cut(s) 31
SmoI CTYRAG 1 cut(s) 31
Sse9I AATT 1 cut(s) 595
StyD4I CCNGG 3 cut(s) 54, 92, 216
StyI CCWWGG 5 cut(s) 126, 339, 381, 459, 501
TaaI ACNGT 5 cut(s) 66, 295, 470, 493, 544
TaiI ACGT 1 cut(s) 306
TaqI TCGA 2 cut(s) 231, 252
TasI AATT 1 cut(s) 595
TatI WGTACW 1 cut(s) 197
TauI GCSGC 6 cut(s) 143, 317, 320, 437, 452, 524
TscAI CASTG 1 cut(s) 498
TseI GCWGC 2 cut(s) 5, 269
TspRI CASTG 1 cut(s) 498
Tth111I GACNNNGTC 1 cut(s) 227
VpaK11BI GGWCC 1 cut(s) 36
XapI RAATTY 1 cut(s) 595
XcmI CCANNNNNNNNNTGG 1 cut(s) 292
ZrmI AGTACT 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.