FvH4_3g08940

response to water deprivation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001595
Physical Location & Seq
Reverse (-)
5233746 .. 5234453
708 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g08940.t1

Sequence Viewer

Length: 609 bp
ATGGCAGCCAGCAATGTCATCTACAACCTCTCAAGGTCCTCATTTCCTCAGTCCCCAGCTTCACACTCCCTCAGTCCCTCTCTCAAAACCTCCAGGGTCTGCTTCACCTCCTCCTCCAACTTCTCCAAGGTTGGCAATGCGGCGGAGAAGAATAGGTACTTAAGTTCTCGCCGAGCGTATGACGACAAGGACTGGAGTACTAAAGCAAAGCAAACCCTGGAAGACGATGTCGAGAGTGGAAAGCAACGCTTCGAGGAACTAAAAGGAGCAGCGACGGAGTACACCAAAGACACGGTGGACAACTTAAAAGACGCAGCGGCGACTATAGGGGAGAAGGCCAAGGAGGGATCGGATAAGGTGGCTGAGTCAGCGGAGAGTAGTACGGAGAAGGTTAAGGAGTATGCAGGTGGTGCAACAGAGAAGACAAAAGACGCGGCGGAGACAATAGCGGCGAAGGCCAAGGAGAACACTAACGAGGTGGTGGACAGCGCTGAAAGTGCAAAGGACAAGACTTGCAATGCGGTGGAGAGTGGGGCGGAGACGGTGAAAGATAAGGTGAACGAGGGGACGAGCAAGACAGCTGAGACGGTGAAGAATATGAAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 ko00515 ko01100 ko04624 ko05205 map00514 map00515 map01100 map04624 map05205
Pfam Domains
Protein Families
Ank_2 Ank_4 Ank_5 Apolipoprotein Death ZU5

Protein Analysis

203

Amino Acids

21.67

Weight (kDa)

5.7

Isoelectric Point (pI)

35.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 395
Acc36I ACCTGC 1 cut(s) 395
AccII CGCG 1 cut(s) 434
AciI CCGC 9 cut(s) 140, 143, 317, 371, 434, 437, 449, 521, 536
AclWI GGATC 1 cut(s) 355
AfaI GTAC 4 cut(s) 158, 199, 281, 382
AfeI AGCGCT 1 cut(s) 490
AflII CTTAAG 1 cut(s) 160
AjnI CCWGG 2 cut(s) 92, 216
AluBI AGCT 2 cut(s) 59, 581
AluI AGCT 2 cut(s) 59, 581
Alw26I GTCTC 3 cut(s) 434, 533, 578
AlwI GGATC 1 cut(s) 355
AlwNI CAGNNNCTG 1 cut(s) 99
Aor51HI AGCGCT 1 cut(s) 490
AoxI GGCC 2 cut(s) 336, 456
ApeKI GCWGC 3 cut(s) 5, 269, 314
AspLEI GCGC 1 cut(s) 491
AspS9I GGNCC 1 cut(s) 36
AsuHPI GGTGA 4 cut(s) 97, 556, 568, 601
AvaII GGWCC 1 cut(s) 36
BaeI ACNNNNGTAYC 2 cut(s) 148, 181
BarI GAAGNNNNNNTAC 2 cut(s) 140, 172
BbsI GAAGAC 2 cut(s) 228, 428
BbvI GCAGC 3 cut(s) 17, 281, 326
BciT130I CCWGG 2 cut(s) 94, 218
BcoDI GTCTC 3 cut(s) 434, 533, 578
BfmI CTRYAG 1 cut(s) 324
BfoI RGCGCY 1 cut(s) 492
BfrI CTTAAG 1 cut(s) 160
BfuAI ACCTGC 1 cut(s) 395
BisI GCNGC 7 cut(s) 6, 141, 270, 315, 318, 435, 450
BlsI GCNGC 7 cut(s) 7, 142, 271, 316, 319, 436, 451
BmcAI AGTACT 1 cut(s) 199
Bme1390I CCNGG 2 cut(s) 94, 218
Bme18I GGWCC 1 cut(s) 36
BmgT120I GGNCC 1 cut(s) 36
BmrFI CCNGG 2 cut(s) 94, 218
BpiI GAAGAC 2 cut(s) 228, 428
BpmI CTGGAG 2 cut(s) 76, 214
BpuEI CTTGAG 1 cut(s) 16
BsaJI CCNNGG 5 cut(s) 93, 126, 216, 339, 459
Bse1I ACTGG 1 cut(s) 197
Bse3DI GCAATG 3 cut(s) 19, 142, 523
BseBI CCWGG 2 cut(s) 94, 218
BseDI CCNNGG 5 cut(s) 93, 126, 216, 339, 459
BseMI GCAATG 3 cut(s) 19, 142, 523
BseMII CTCAG 4 cut(s) 62, 85, 354, 573
BseNI ACTGG 1 cut(s) 197
BseRI GAGGAG 2 cut(s) 100, 103
BseXI GCAGC 3 cut(s) 17, 281, 326
BseYI CCCAGC 1 cut(s) 55
Bsh1236I CGCG 1 cut(s) 434
BshFI GGCC 2 cut(s) 338, 458
BslFI GGGAC 3 cut(s) 37, 60, 580
BsmAI GTCTC 3 cut(s) 434, 533, 578
BsmBI CGTCTC 2 cut(s) 533, 578
BsmFI GGGAC 3 cut(s) 37, 60, 580
BsnI GGCC 2 cut(s) 338, 458
Bsp143I GATC 1 cut(s) 347
BspACI CCGC 9 cut(s) 140, 143, 317, 371, 434, 437, 449, 521, 536
BspANI GGCC 2 cut(s) 338, 458
BspCNI CTCAG 4 cut(s) 61, 84, 355, 574
BspFNI CGCG 1 cut(s) 434
BspMI ACCTGC 1 cut(s) 395
BspPI GGATC 1 cut(s) 355
BspTI CTTAAG 1 cut(s) 160
BsrDI GCAATG 3 cut(s) 19, 142, 523
BsrI ACTGG 1 cut(s) 197
BssECI CCNNGG 5 cut(s) 93, 126, 216, 339, 459
BssMI GATC 1 cut(s) 347
BssT1I CCWWGG 3 cut(s) 126, 339, 459
Bst2UI CCWGG 2 cut(s) 94, 218
Bst4CI ACNGT 3 cut(s) 295, 544, 589
BstAFI CTTAAG 1 cut(s) 160
BstAPI GCANNNNNTGC 1 cut(s) 410
BstC8I GCNNGC 1 cut(s) 10
BstDEI CTNAG 4 cut(s) 48, 71, 363, 582
BstFNI CGCG 1 cut(s) 434
BstH2I RGCGCY 1 cut(s) 492
BstHHI GCGC 1 cut(s) 491
BstKTI GATC 1 cut(s) 350
BstMAI GTCTC 3 cut(s) 434, 533, 578
BstMBI GATC 1 cut(s) 347
BstMWI GCNNNNNNNGC 4 cut(s) 368, 410, 455, 497
BstNI CCWGG 2 cut(s) 94, 218
BstSCI CCNGG 2 cut(s) 92, 216
BstSFI CTRYAG 1 cut(s) 324
BstUI CGCG 1 cut(s) 434
BstV1I GCAGC 3 cut(s) 17, 281, 326
BstV2I GAAGAC 2 cut(s) 228, 428
BsuRI GGCC 2 cut(s) 338, 458
BveI ACCTGC 1 cut(s) 395
Cac8I GCNNGC 1 cut(s) 10
CaiI CAGNNNCTG 1 cut(s) 99
CfoI GCGC 1 cut(s) 491
Cfr13I GGNCC 1 cut(s) 36
CseI GACGC 2 cut(s) 320, 440
Csp6I GTAC 4 cut(s) 157, 198, 280, 381
CviJI RGCY 6 cut(s) 8, 59, 338, 362, 458, 581
CviKI_1 RGCY 6 cut(s) 8, 59, 338, 362, 458, 581
CviQI GTAC 4 cut(s) 157, 198, 280, 381
DdeI CTNAG 4 cut(s) 48, 71, 363, 582
DpnI GATC 1 cut(s) 349
DpnII GATC 1 cut(s) 347
EciI GGCGGA 3 cut(s) 158, 452, 551
Eco130I CCWWGG 3 cut(s) 126, 339, 459
Eco47I GGWCC 1 cut(s) 36
Eco47III AGCGCT 1 cut(s) 490
EcoO109I RGGNCCY 1 cut(s) 36
EcoRII CCWGG 2 cut(s) 92, 216
EcoT14I CCWWGG 3 cut(s) 126, 339, 459
ErhI CCWWGG 3 cut(s) 126, 339, 459
Esp3I CGTCTC 2 cut(s) 533, 578
FaiI YATR 4 cut(s) 180, 326, 402, 599
FalI AAGNNNNNCTT 2 cut(s) 233, 265
FaqI GGGAC 3 cut(s) 37, 60, 580
Fnu4HI GCNGC 7 cut(s) 6, 141, 270, 315, 318, 435, 450
Fsp4HI GCNGC 7 cut(s) 6, 141, 270, 315, 318, 435, 450
GlaI GCGC 1 cut(s) 490
GluI GCNGC 7 cut(s) 6, 141, 270, 315, 318, 435, 450
GsaI CCCAGC 1 cut(s) 59
GsuI CTGGAG 2 cut(s) 76, 214
HaeII RGCGCY 1 cut(s) 492
HaeIII GGCC 2 cut(s) 338, 458
HgaI GACGC 2 cut(s) 320, 440
HhaI GCGC 1 cut(s) 491
Hin6I GCGC 1 cut(s) 489
HinP1I GCGC 1 cut(s) 489
HinfI GANTC 1 cut(s) 365
HphI GGTGA 4 cut(s) 97, 556, 568, 601
Hpy166II GTNNAC 4 cut(s) 282, 298, 484, 559
Hpy188I TCNGA 1 cut(s) 352
Hpy188III TCNNGA 1 cut(s) 232
Hpy8I GTNNAC 4 cut(s) 282, 298, 484, 559
Hpy99I CGWCG 1 cut(s) 277
HpyAV CCTTC 3 cut(s) 328, 382, 448
HpyCH4III ACNGT 3 cut(s) 295, 544, 589
HpyCH4V TGCA 4 cut(s) 404, 413, 500, 516
HpyF10VI GCNNNNNNNGC 4 cut(s) 368, 410, 455, 497
HpyF3I CTNAG 4 cut(s) 48, 71, 363, 582
HspAI GCGC 1 cut(s) 489
Kzo9I GATC 1 cut(s) 347
LmnI GCTCC 1 cut(s) 266
LpnPI CCDG 8 cut(s) 22, 69, 79, 106, 178, 203, 230, 390
Lsp1109I GCAGC 3 cut(s) 17, 281, 326
MalI GATC 1 cut(s) 349
MboI GATC 1 cut(s) 347
MboII GAAGA 4 cut(s) 160, 233, 433, 604
MlyI GAGTC 1 cut(s) 374
MmeI TCCRAC 1 cut(s) 141
MseI TTAA 3 cut(s) 161, 305, 393
MspA1I CMGCKG 3 cut(s) 317, 371, 581
MspCI CTTAAG 1 cut(s) 160
MspR9I CCNGG 2 cut(s) 94, 218
MvaI CCWGG 2 cut(s) 94, 218
MvnI CGCG 1 cut(s) 434
MwoI GCNNNNNNNGC 4 cut(s) 368, 410, 455, 497
NdeII GATC 1 cut(s) 347
NmeAIII GCCGAG 1 cut(s) 197
PaqCI CACCTGC 1 cut(s) 395
PflFI GACNNNGTC 1 cut(s) 227
PkrI GCNGC 7 cut(s) 7, 142, 271, 316, 319, 436, 451
PleI GAGTC 1 cut(s) 373
PpsI GAGTC 1 cut(s) 373
PpuMI RGGWCCY 1 cut(s) 36
Psp5II RGGWCCY 1 cut(s) 36
Psp6I CCWGG 2 cut(s) 92, 216
PspFI CCCAGC 1 cut(s) 55
PspGI CCWGG 2 cut(s) 92, 216
PspPI GGNCC 1 cut(s) 36
PspPPI RGGWCCY 1 cut(s) 36
PstNI CAGNNNCTG 1 cut(s) 99
PsyI GACNNNGTC 1 cut(s) 227
PvuII CAGCTG 1 cut(s) 581
RsaI GTAC 4 cut(s) 158, 199, 281, 382
RsaNI GTAC 4 cut(s) 157, 198, 280, 381
SaqAI TTAA 3 cut(s) 161, 305, 393
SatI GCNGC 7 cut(s) 6, 141, 270, 315, 318, 435, 450
Sau3AI GATC 1 cut(s) 347
Sau96I GGNCC 1 cut(s) 36
ScaI AGTACT 1 cut(s) 199
SchI GAGTC 1 cut(s) 374
ScrFI CCNGG 2 cut(s) 94, 218
SfcI CTRYAG 1 cut(s) 324
SinI GGWCC 1 cut(s) 36
SmlI CTYRAG 2 cut(s) 31, 160
SmoI CTYRAG 2 cut(s) 31, 160
SsiI CCGC 9 cut(s) 140, 143, 317, 371, 434, 437, 449, 521, 536
StyD4I CCNGG 2 cut(s) 92, 216
StyI CCWWGG 3 cut(s) 126, 339, 459
TaaI ACNGT 3 cut(s) 295, 544, 589
TaqI TCGA 2 cut(s) 231, 252
TatI WGTACW 2 cut(s) 197, 279
TauI GCSGC 4 cut(s) 143, 320, 437, 452
Tru1I TTAA 3 cut(s) 161, 305, 393
Tru9I TTAA 3 cut(s) 161, 305, 393
TseI GCWGC 3 cut(s) 5, 269, 314
TspGWI ACGGA 2 cut(s) 290, 398
Tth111I GACNNNGTC 1 cut(s) 227
Vha464I CTTAAG 1 cut(s) 160
VpaK11BI GGWCC 1 cut(s) 36
XcmI CCANNNNNNNNNTGG 1 cut(s) 292
ZrmI AGTACT 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.