AT5G44310

late embryogenesis abundant

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0001595
Physical Location & Seq
Reverse (-)
17847781 .. 17849536
1756 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G44310.2

Sequence Viewer

Length: 888 bp
ATGTGTGAAGAGATATCAATGGTTGTTGATTTTCAGGGAAGATATGATCCAGTAGAGAAAGCGAGAGACTCGAGGGCCGACTTGGCATATGATTCGAAAAAATGGAGAGAAGAATCAGGAGAATACGCAGAAGCAGGTAAAGGGAAAGCCCACAAGACAAAAGAGGAAGCTAAGGACAAAGCTTACGATATGAAAGAGAGAACGAAAGATTATGCTGAACAAACTAAGAATAAAGTGAATGAAGGAGCAAGCAGAGCAGCTGATAAAGCCTATGAGACGAAAGAGAAGGCCAAGGACAAAGCCTATGATGTGAAAGAGAAGACGAAAGATTACGCAGAAGAGGCCAAGGATAAGGTGAATGAAGGAGCTAGTAGAGCTGCTGATAAAGCTTACGAGACAAAAGAGAAGGCTAAAGACAAAGCCTATGATGTGAAAGAGAAGACAAAAGATTTTGCGGAAGAAACTAAGGAGAAAGTGAATGAAGGAGCGAGTAGAGCAGCAGATAAAGCTTATGATGTGAAGGAGAAGACAAAGAATTATGCGGAACAAACAAAAGATAAAGTGAATGAAGGAGCGAGTAGAGCTGCGGATAAAGCTGAAGAGACAAAAGATAAAGCAAAGGACTATGCAGAGGACTCAAAGGAGAAAGCAGAGGACATGGCTCATGGGTTTAAGGAAAAGGCTCAAGATATTGGGGAGAAGACTATGGATACTGTGAAAGATGTGTGGGAGACGGCGAAGAGCACGGCTCAGAAGGTGACTGAGGCTGTGGTTGGGTCCGGTGAGGAGGCGGATAAGGCTAGGGATGATGTTGATAAGGGCTTGGAAGATTTGTCGAAAAAGGCGAAGGAAAATCGAAATAAGGATGATGATTTCAAGAGGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

295

Amino Acids

33.36

Weight (kDa)

5.42

Isoelectric Point (pI)

26.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 125
AciI CCGC 4 cut(s) 455, 542, 587, 791
AclWI GGATC 1 cut(s) 41
AcuI CTGAAG 1 cut(s) 618
AgsI TTSAA 1 cut(s) 877
AluBI AGCT 9 cut(s) 170, 182, 260, 368, 377, 389, 509, 584, 596
AluI AGCT 9 cut(s) 170, 182, 260, 368, 377, 389, 509, 584, 596
Alw21I GWGCWC 1 cut(s) 746
Alw26I GTCTC 5 cut(s) 60, 269, 389, 596, 725
AlwI GGATC 1 cut(s) 41
Ama87I CYCGRG 1 cut(s) 70
AoxI GGCC 3 cut(s) 75, 288, 342
ApeKI GCWGC 4 cut(s) 257, 377, 497, 584
AspS9I GGNCC 2 cut(s) 75, 777
AsuHPI GGTGA 3 cut(s) 367, 769, 794
AsuII TTCGAA 1 cut(s) 95
AvaI CYCGRG 1 cut(s) 70
AvaII GGWCC 1 cut(s) 777
BbsI GAAGAC 4 cut(s) 326, 446, 533, 707
Bbv12I GWGCWC 1 cut(s) 746
BbvI GCAGC 4 cut(s) 269, 364, 509, 571
BceAI ACGGC 2 cut(s) 750, 762
BcgI CGANNNNNNTGC 2 cut(s) 75, 109
BciVI GTATCC 1 cut(s) 703
BcoDI GTCTC 5 cut(s) 60, 269, 389, 596, 725
BfaI CTAG 2 cut(s) 369, 801
BfuAI ACCTGC 1 cut(s) 125
BfuI GTATCC 1 cut(s) 703
BglI GCCNNNNNGGC 1 cut(s) 83
BisI GCNGC 4 cut(s) 258, 378, 498, 585
BlsI GCNGC 4 cut(s) 259, 379, 499, 586
Bme18I GGWCC 1 cut(s) 777
BmeT110I CYCGRG 1 cut(s) 70
BmgT120I GGNCC 2 cut(s) 75, 777
BmiI GGNNCC 1 cut(s) 778
BpiI GAAGAC 4 cut(s) 326, 446, 533, 707
BplI GAGNNNNNCTC 2 cut(s) 733, 765
Bpu10I CCTNAGC 1 cut(s) 171
Bpu14I TTCGAA 1 cut(s) 95
BpuEI CTTGAG 1 cut(s) 669
BsaJI CCNNGG 2 cut(s) 291, 345
BsaWI WCCGGW 1 cut(s) 779
Bse1I ACTGG 1 cut(s) 50
BseDI CCNNGG 2 cut(s) 291, 345
BseGI GGATG 2 cut(s) 811, 871
BseMII CTCAG 2 cut(s) 753, 764
BseNI ACTGG 1 cut(s) 50
BseRI GAGGAG 1 cut(s) 800
BseXI GCAGC 4 cut(s) 269, 364, 509, 571
BshFI GGCC 3 cut(s) 77, 290, 344
BsiHKAI GWGCWC 1 cut(s) 746
BsiHKCI CYCGRG 1 cut(s) 70
BsiSI CCGG 1 cut(s) 780
BsmAI GTCTC 5 cut(s) 60, 269, 389, 596, 725
BsmBI CGTCTC 2 cut(s) 269, 725
BsnI GGCC 3 cut(s) 77, 290, 344
BsoBI CYCGRG 1 cut(s) 70
Bsp119I TTCGAA 1 cut(s) 95
Bsp1286I GDGCHC 1 cut(s) 746
Bsp143I GATC 1 cut(s) 46
BspACI CCGC 4 cut(s) 455, 542, 587, 791
BspANI GGCC 3 cut(s) 77, 290, 344
BspCNI CTCAG 2 cut(s) 754, 763
BspLI GGNNCC 1 cut(s) 778
BspMI ACCTGC 1 cut(s) 125
BspPI GGATC 1 cut(s) 41
BspQI GCTCTTC 1 cut(s) 734
BspT104I TTCGAA 1 cut(s) 95
BsrI ACTGG 1 cut(s) 50
BssECI CCNNGG 2 cut(s) 291, 345
BssMI GATC 1 cut(s) 46
BssT1I CCWWGG 2 cut(s) 291, 345
Bst4CI ACNGT 1 cut(s) 715
Bst6I CTCTTC 4 cut(s) 3, 333, 594, 734
BstBI TTCGAA 1 cut(s) 95
BstC8I GCNNGC 1 cut(s) 250
BstDEI CTNAG 5 cut(s) 171, 225, 465, 750, 762
BstF5I GGATG 2 cut(s) 811, 871
BstKTI GATC 1 cut(s) 49
BstMAI GTCTC 5 cut(s) 60, 269, 389, 596, 725
BstMBI GATC 1 cut(s) 46
BstV1I GCAGC 4 cut(s) 269, 364, 509, 571
BstV2I GAAGAC 4 cut(s) 326, 446, 533, 707
BsuI GTATCC 1 cut(s) 703
BsuRI GGCC 3 cut(s) 77, 290, 344
BtsCI GGATG 2 cut(s) 811, 871
BveI ACCTGC 1 cut(s) 125
Cac8I GCNNGC 1 cut(s) 250
Cfr13I GGNCC 2 cut(s) 75, 777
CviAII CATG 2 cut(s) 658, 665
DdeI CTNAG 5 cut(s) 171, 225, 465, 750, 762
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
Eam1104I CTCTTC 4 cut(s) 3, 333, 594, 734
EarI CTCTTC 4 cut(s) 3, 333, 594, 734
EciI GGCGGA 1 cut(s) 806
Eco130I CCWWGG 2 cut(s) 291, 345
Eco32I GATATC 1 cut(s) 15
Eco47I GGWCC 1 cut(s) 777
Eco57I CTGAAG 1 cut(s) 618
Eco88I CYCGRG 1 cut(s) 70
EcoRV GATATC 1 cut(s) 15
EcoT14I CCWWGG 2 cut(s) 291, 345
ErhI CCWWGG 2 cut(s) 291, 345
Esp3I CGTCTC 2 cut(s) 269, 725
FaeI CATG 2 cut(s) 661, 668
FatI CATG 2 cut(s) 657, 664
FauNDI CATATG 1 cut(s) 88
Fnu4HI GCNGC 4 cut(s) 258, 378, 498, 585
FokI GGATG 2 cut(s) 818, 878
Fsp4HI GCNGC 4 cut(s) 258, 378, 498, 585
FspBI CTAG 2 cut(s) 369, 801
GluI GCNGC 4 cut(s) 258, 378, 498, 585
HaeIII GGCC 3 cut(s) 77, 290, 344
HapII CCGG 1 cut(s) 780
Hin1II CATG 2 cut(s) 661, 668
HindIII AAGCTT 3 cut(s) 180, 387, 507
HinfI GANTC 4 cut(s) 68, 92, 113, 635
HpaII CCGG 1 cut(s) 780
HphI GGTGA 3 cut(s) 367, 769, 794
Hpy188I TCNGA 1 cut(s) 753
Hpy188III TCNNGA 3 cut(s) 117, 686, 877
HpyAV CCTTC 9 cut(s) 236, 280, 356, 400, 476, 514, 563, 748, 841
HpyCH4III ACNGT 1 cut(s) 715
HpyCH4V TGCA 1 cut(s) 629
HpyF3I CTNAG 5 cut(s) 171, 225, 465, 750, 762
Hsp92II CATG 2 cut(s) 661, 668
Kzo9I GATC 1 cut(s) 46
LguI GCTCTTC 1 cut(s) 734
LmnI GCTCC 4 cut(s) 245, 365, 485, 572
LpnPI CCDG 5 cut(s) 20, 63, 102, 120, 793
Lsp1109I GCAGC 4 cut(s) 269, 364, 509, 571
MaeI CTAG 2 cut(s) 369, 801
MaeIII GTNAC 1 cut(s) 757
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MhlI GDGCHC 1 cut(s) 746
MluCI AATT 1 cut(s) 535
MlyI GAGTC 2 cut(s) 62, 629
MnlI CCTC 9 cut(s) 66, 157, 334, 625, 646, 757, 778, 781, 873
MseI TTAA 1 cut(s) 672
MspA1I CMGCKG 1 cut(s) 260
MspI CCGG 1 cut(s) 780
NdeI CATATG 1 cut(s) 88
NdeII GATC 1 cut(s) 46
NlaIII CATG 2 cut(s) 661, 668
NlaIV GGNNCC 1 cut(s) 778
NmuCI GTSAC 1 cut(s) 757
NspV TTCGAA 1 cut(s) 95
PaeR7I CTCGAG 1 cut(s) 70
PciSI GCTCTTC 1 cut(s) 734
PcsI WCGNNNNNNNCGW 1 cut(s) 842
PfeI GAWTC 2 cut(s) 92, 113
PkrI GCNGC 4 cut(s) 259, 379, 499, 586
PleI GAGTC 2 cut(s) 62, 629
PpsI GAGTC 2 cut(s) 62, 629
PspN4I GGNNCC 1 cut(s) 778
PspPI GGNCC 2 cut(s) 75, 777
PspXI VCTCGAGB 1 cut(s) 70
PvuII CAGCTG 1 cut(s) 260
SapI GCTCTTC 1 cut(s) 734
SaqAI TTAA 1 cut(s) 672
SatI GCNGC 4 cut(s) 258, 378, 498, 585
Sau3AI GATC 1 cut(s) 46
Sau96I GGNCC 2 cut(s) 75, 777
SchI GAGTC 2 cut(s) 62, 629
SduI GDGCHC 1 cut(s) 746
Sfr274I CTCGAG 1 cut(s) 70
SfuI TTCGAA 1 cut(s) 95
SinI GGWCC 1 cut(s) 777
SlaI CTCGAG 1 cut(s) 70
SmlI CTYRAG 2 cut(s) 70, 684
SmoI CTYRAG 2 cut(s) 70, 684
Sse9I AATT 1 cut(s) 535
SsiI CCGC 4 cut(s) 455, 542, 587, 791
SspMI CTAG 2 cut(s) 369, 801
StyI CCWWGG 2 cut(s) 291, 345
TaaI ACNGT 1 cut(s) 715
TaqI TCGA 4 cut(s) 71, 95, 836, 856
TasI AATT 1 cut(s) 535
TfiI GAWTC 2 cut(s) 92, 113
Tru1I TTAA 1 cut(s) 672
Tru9I TTAA 1 cut(s) 672
TseFI GTSAC 1 cut(s) 757
TseI GCWGC 4 cut(s) 257, 377, 497, 584
Tsp45I GTSAC 1 cut(s) 757
TspDTI ATGAA 5 cut(s) 206, 255, 375, 495, 582
VpaK11BI GGWCC 1 cut(s) 777
XhoI CTCGAG 1 cut(s) 70
XspI CTAG 2 cut(s) 369, 801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.